Basic Information

Insect: Nematopogon swammerdamellus
Gene Symbol: -
Assembly: GCA_946902865.1
Location: CAMPPV010000511.1:272399-291706[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 1.3e-05 0.00097 20.4 1.8 1 23 411 433 411 433 0.98

2 8 0.0053 0.4 12.1 0.5 1 23 466 489 466 489 0.95

3 8 8.4e-05 0.0063 17.8 1.9 1 23 493 515 493 515 0.98

4 8 0.00025 0.019 16.3 0.4 2 23 522 544 521 544 0.96

5 8 0.46 35 6.0 0.8 3 21 553 571 552 576 0.90

6 8 0.0029 0.22 12.9 3.5 1 23 584 607 584 607 0.97

7 8 0.00028 0.021 16.1 1.5 1 23 610 633 610 633 0.96

8 8 0.052 3.9 9.0 0.3 1 14 642 655 642 656 0.91

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	1.3e-05	0.00097	20.4	1.8	1	23	411	433	411	433	0.98
2	8	0.0053	0.4	12.1	0.5	1	23	466	489	466	489	0.95
3	8	8.4e-05	0.0063	17.8	1.9	1	23	493	515	493	515	0.98
4	8	0.00025	0.019	16.3	0.4	2	23	522	544	521	544	0.96
5	8	0.46	35	6.0	0.8	3	21	553	571	552	576	0.90
6	8	0.0029	0.22	12.9	3.5	1	23	584	607	584	607	0.97
7	8	0.00028	0.021	16.1	1.5	1	23	610	633	610	633	0.96
8	8	0.052	3.9	9.0	0.3	1	14	642	655	642	656	0.91

Sequence Information

Coding Sequence: ATGGCAGATCTGTTCAAGATGATGTCCGGGATGATGTTTGAGTACGTGGACGCGGCGGCGCCGCCGCTGCGCTGCCCCACCTGCCTCACGCCCGGCCGCGTGCTCCTCCCGCTGCACGAGGCATCGCGGGCCTACAGCACGCTGCTCGCAGGCCTGCACAGCTATGATCAGATAATGGACTTTGTGACGACGGCGCGCATCTGCTGGGAGTGCCACAGCTTCCTCAGCAAGATGGTCAAGTTCCAGCGGCAGGTGTTCGACGCCGACTCCATGATGCGCTCCGGCGCCGCCATGGGCAAGTGCGACTGCCACAGCTTCCTCAGCAAGATGGTCAAGTTCCAGCGGCAGGTGTTCGACGCCGACTCCATGATGCGCTCTGGCGCCGCCATGGGCAAGTGCGACTGCCACAGCTTCCTCAGCAAGATGGTCAAGTTCCAGCGGCAGGTGTTCGACGCCGACTCCATGATGCGCTCTGGCGCCGCCATGGGCAAGTGCGACTGCCACAGCTTCCTCAGCAAGATGGTCAAGTTCCAGCGGCAGGTGTTCGACGCGGACTCCATGATGCGCTCCGGCGCCGCCATGGGCAAGTGCGACTGCCACAGCTTCCTCAGCAAGATGGTCAAGTTCCAGCGGCAGGTGTTCGACGCCGACTCCATGATGCGCTCCGGTGCCGCCATGGGCAAGTGCGACGTGCGTATTACCGTGCCGACATTCTCGCGGCTGGTGAACAGCGCGACCAAGCTCGACTACAACTTAGAGCTGAAGCACGAGAGCGACGCGCTGTCGGACGACGACGCGTGGGACGCGGCGGGCGGCGGCGCGGCGCCCGACGACGACGACGGCGGAGTGAAGCTCGAGTGCGACGCGGCGCCGCTGGGCGACGCGCCGGGCAAGCGCGAGGAGGAGAGGAAGCGCGTCAAGAGGAAGAGCAAGAAGAAGGAGGGCAAGAAGGCGAGGGCGCGGCGGGAGAAGGAGAAGGAGAAGAAGGAAAAAGTGAAGAAGTCGAAGTGGCCCGGCAAGAAGGTGCTGCTTACAGGCGACAACAAGAACGTGAAGATTGTGTCGGTCGCCGTCAGCGAGGAGGAGTTCCAGAGATATCGGGACGAGGACCGCAAGAAGAAGCAGTACATCAACGCGCCGCACAAGTGTGAGACCTGCATCAAGGGTTTCGCCTGCGTCGCGATGCTAGAGAAGCACATCACCAACTGTCACAGCAATGCGAACGGTACGTTCGAGTGTCCCGTGTGCGGAATGCACTTCCGCACCCAGAAGCTCATGATGCGACACCGGCGCGGCCACTACCGACTCTACGTCTGCAGCGTCTGCGGGTTCCCCCACCGGCATCTCACCAAGGTACTGCGTCACTACCACGCTGCGCATGAGCCCGGCAAGACCTTCCCCTGCGACCAGTGCCCTCAGGTGTTCGAATCGTCACGCAAGATGCGCTACCACCGCGAGATCACGCACAAGGAGGTCCACCAGTGCGAGTACTGCGACAAGGTCCTGTGCAACGCTCAGTCTCTCCGCGTTCATCTACTCATCCACACGGGCATGCCGACGCTCGTCTGCTCGATCTGCGAGAAGAGTTGCCGCGGCGAGACGGGGCTGTACGCGCACATGCGCACCGCGCACAACCCCAACACGGAGGACGCGTACTGCCGCGAGTGCGACATACAGTTCAAGAACAAGAACATCTACCGCACCCACCTCAAGATTAGCCCCAAGCACAATTCGCCTGCACAGTTCAAATTCCCGTGCGAGAAATGTAAGAAGCGGTTCCTGACGCAGGCGCTACTCAACGACCACCACCGCAAGTACCATCTCGACTACACCTGCCACATCTGTCAGAAGCAACTGGCGAGCTGGTACTCGCTGGACAAGCATATAAAGTTCGTGCACGAGGGCCGGCAGCTCCCCAAGAAGTACATCTGCGAGGTCTGCGAGAAGGCTTTCACGCGTAAAACATCCTCAATTGTCGACGCAGCCGGACCGGGATTGATCGCTGCGTCCGCGGCGCGCGCGCAACGGGTGGGCCGCGGCGTGACCCCGCGGCCCCAGCCAACAGAAAAATACAAATCCTTCATAGGAGGCCACACGATCCACCCGTGA
Protein Sequence: MADLFKMMSGMMFEYVDAAAPPLRCPTCLTPGRVLLPLHEASRAYSTLLAGLHSYDQIMDFVTTARICWECHSFLSKMVKFQRQVFDADSMMRSGAAMGKCDCHSFLSKMVKFQRQVFDADSMMRSGAAMGKCDCHSFLSKMVKFQRQVFDADSMMRSGAAMGKCDCHSFLSKMVKFQRQVFDADSMMRSGAAMGKCDCHSFLSKMVKFQRQVFDADSMMRSGAAMGKCDVRITVPTFSRLVNSATKLDYNLELKHESDALSDDDAWDAAGGGAAPDDDDGGVKLECDAAPLGDAPGKREEERKRVKRKSKKKEGKKARARREKEKEKKEKVKKSKWPGKKVLLTGDNKNVKIVSVAVSEEEFQRYRDEDRKKKQYINAPHKCETCIKGFACVAMLEKHITNCHSNANGTFECPVCGMHFRTQKLMMRHRRGHYRLYVCSVCGFPHRHLTKVLRHYHAAHEPGKTFPCDQCPQVFESSRKMRYHREITHKEVHQCEYCDKVLCNAQSLRVHLLIHTGMPTLVCSICEKSCRGETGLYAHMRTAHNPNTEDAYCRECDIQFKNKNIYRTHLKISPKHNSPAQFKFPCEKCKKRFLTQALLNDHHRKYHLDYTCHICQKQLASWYSLDKHIKFVHEGRQLPKKYICEVCEKAFTRKTSSIVDAAGPGLIAASAARAQRVGRGVTPRPQPTEKYKSFIGGHTIHP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -