Nswa031762.1
Basic Information
- Insect
- Nematopogon swammerdamellus
- Gene Symbol
- RREB1
- Assembly
- GCA_946902865.1
- Location
- CAMPPV010001656.1:131781-140371[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.17 13 7.4 0.9 2 23 72 94 71 94 0.95 2 11 0.061 4.6 8.8 0.2 1 23 284 306 284 306 0.97 3 11 0.0022 0.16 13.3 0.5 1 23 315 337 315 337 0.99 4 11 0.00095 0.072 14.5 2.0 1 23 343 366 343 366 0.97 5 11 0.0038 0.29 12.6 1.6 1 23 721 744 721 744 0.96 6 11 9.8e-05 0.0075 17.6 1.3 2 23 959 980 958 980 0.97 7 11 0.033 2.5 9.6 5.3 1 23 986 1009 986 1009 0.97 8 11 0.01 0.79 11.2 1.1 1 23 1049 1073 1049 1073 0.93 9 11 1.4 1e+02 4.5 0.2 1 23 1108 1131 1108 1131 0.91 10 11 0.0023 0.18 13.2 0.2 2 23 1171 1192 1170 1192 0.96 11 11 0.25 19 6.9 4.5 1 23 1198 1220 1198 1220 0.97
Sequence Information
- Coding Sequence
- ATGCCAGCGCAAGTGAAGACGGAGAACCTCACAGACACAAAACTGGAGCCAGAGGACGATGAAAAGACGGCGTGCGAGCCGCCGCGCGCCGCGCTCCGCGCCAGCATCGACAGCGACAACCGAAGCAGCGACGAGGACGAACGCCGCGCGCGCAAGAGACACGCCTCCCCCGACACGCAACGAACGCCAGACATCAAGAGACCAAGTCGCCTGCAGTGCAACATCTGCCGGCTGCGATTCGACTCGACCAGGGCTCTCGACCTACACAGATTCACGACGCACGGCGAGAAGACGCGAGCCGGCTTCGACGATCTCACGTTTGTCGATTTCTCGAGCAGGAAATTCCCGGAGATCGCGCGCGGAGTCTGCGAGCGTAGTCCGCACGTGTCGGTCACCGAGCCGCGGTACAGGTGCGAGCGCTGCGCGAGAGACTTCCCCTGCGGGCGCGCCCTCGACATGCACAGGAGCGCCTGCGCCGCCCCCGCGCGACCCCCGAGCCCGCAGCGCGACCGCCGCGAGGACTTCTTCGCGCAACTCGACCTCCGCAACAGCGCCTTTGCCGGCACGCTCACACCGCCGCTCGAGAGATTCGCAAAGAAGCACTACGAGGATTCATTCACGGAAGATGCGAATGCGCGGCCCGTGGACGCCGTGCGCGATCTCGCGGACATCCAGTCGATCCTCAACGTCACCGCCGCGGGAGGTCTCCTCGAGAGGCTGACCGGCACTAGAGTGTCCCTGGAGAACGCGGCGCTGACCCCTCCCGACACGGGCGGCAAGGACCGCGAGCCCGAAGAGTCGCAGGATCGTTTCGCAGCAGAGTTTCGGAGGATGAAGCTTCGGGGAGAGTTCCCGTGCCGTCTCTGCTCGGCCAAATTTCCTAATCTTCGCGCCCTGAAAGGTCACAATCGCGTCCACCTAAGCGGCACAGGCCCGGGGCCTTACCGATGCAACATGTGCCCGCACGCCTCCCTCGACAAGGCAGCGCTGGTCCGGCACATGCGCACGCACAACGGCGACCGGCCCTACGAGTGTGCCGTCTGCAATTACGCGTTCACGACCAAGGCCAACTGCGAGCGTCACCTGCGGAACCGACACGCCAAGATCACGCGCGAGGACGTCAAGCGCTCAATCATATACCACCCGTCCGAGGATCCCAACAACGACGAGGTCAACTCGAAGATCGGCCGCGAGGAGGTGAAGAGGTCGCTCGCCTTCCACACGCCGGAGCCGGAGCGGCGCGACGAGGCGACAGGCCGCGACACGCCGCTGTCGCACTTCCCGCCCTTCGTCGCCGAGCCGCGGCGCCCGCCGGCGCTGCCGCCCGTGCTGCCCGACACGCCGGCGCCGACTCCGCGCGACGACAGACCTCTGCCGAGGATCAAGGTGAAGGGAATCGGCCAGCTCACTCAGATCCCCGAGTTCCGCGAGCCGGAGCACTATCAGCAGGATGACAGCGAGGACGCCGAGTCATTCGCGGACGAGGCGCCCGTCGATCTCAGCACCTCCGACAACAACGACTGCGACGTACTCGATCTCAGCAAGAAGAAGCGCGACTCGGACGAGGAGGCGCCGCCGCAGCCGCCGCTCGCGCGCCCGCCCGCGTGCCCGCCCGCGTTCGACGCGGACCAGGCGGCCGCGGCGGCCGCGACCTTTGAGAAAACGCAGAGACTTTTCCTGGCGCAGCGACGGCTGTTCGAGAGCTCCCTTCCGAAGATCGATCCGGCATTCTACGCGTCGCAACTATCACAGCTGTACCCGGGCGTGCCCGGCCTACCAGGCCTCACCGGTCTGCCGCCCTCGTTCCCGGTCAACCCCTACTTCCTGCAGCCCTTCTTCCCGCCGGCGACCGACCCGCAGGAGCTCGCCGAGATCAAGGAGCGCATTCAGAAGGAGATCCTCCGCGGCCTGCGCCTGTCGGGCGGCGGGCTCGTCACTCCCGACTCGGACAACTCGCAGCCGCGCGTGGAGGTCGTCGAGGAAGACCAGAAGCCGCTGCACCTCGACTCGACACCGCCGGCGCCGCAGCCGGCGCGGCCGGAGTCGCCGCGGCAGAGGCGCGAGTCGCTCGCGCCGCAGTCGGACTCGGTCAAGATGGTGATCAAGAACGGCGTGCTGATGCCGAAGCAGAAGCAGAGGCGCTACCGCACCGAGCGGCCGTTCTCGTGCTCGCAGTGCTCGGCGCGCTTCACGCTGCGCTCCAACATGGAGAGGCACGTGAAGCAGCAACATCCGCAGCACTGGAGCGTGCGGCGTCCGTCGCCGCGTGCGCCGCCCCCGTACCCGACCAGCGTTGACAGCCTCGCTGACCGCATGAAGTTCGCGCTGCTGGCGCGGCAGCTGGAGCGGCCGATGCCGCCGCCGGTGCCGGGAGCGGGCCCGGGCTCGGCGGACCGCTCGCCGGTGCGGCGCGACTCGGACGACGTGGCCGACAACGAGGAAGACGAGGAGGACGCTCTCGTCATCGACGAAGAAGAGGAGCCGGAACCGAGCGAGCTGACCGCCGCTCACCGCGCAGCCGCAGAGATACTCATGGCAACCCACCGGCAGGAGATGGCGAAGGATTTCGATCTCAAGATAGCCGGCAACCTCATCAGCAAGCCTCACATCGTCTCGTCCGATGTGGACGAGCACAAGGAGCCCTCGGATTCTGCGGACGACGACATAGAGATCGTCGCTCCCGCCGAGCCGGCCGTCGTGTCCGCGCCGACCGTCCCGACCAGGAGTGACGAGGAGGAAGACGAGGAAGGCCTCGTGGCTTCCACCAGCGAGGAGAACAACTCCGGCAGTGATGAGAACAGGTCAGAAACGGACGTGCCGGGAACGCAACCGCCGAAGAAGAAGTCCGCCTACAGCCTCGCGCCTAACCGCGTGTCCTGCCCCTACTGCCACCGCAAGTTCCCCTGGTCCTCCTCCCTCCGTCGCCACATCCTCACGCACACCGGCCAGAAGCCATTCAAATGCCCACACTGCCCGCTCCTATTCACCACCAAGTCCAACTGCGATCGGCATCTGTTGCGGAAGCACGGTGCGTCTTCCAAACCCACCATAGTCGAGTCGTCGCCTCCGCAAGAAACTCCCGCGCCTCAGCAGAATAACGAGACAAATCCGAATTTCGCTCTTCGCAACGTTCCCGAGAGACCTTACAAGTGTGCATCATGCCCCTCCAGCACTTTCTCGACGCTGGATAACCTCAAAAAACACATGTCGAGCCGCCACGGACTGCCCGACTCCAGACCTGCGTCTCCCCACGCGGCAGCAACGCAAGAGGGGGATGAGAGAATTGCGGAAATTTCGGACTCCAACGAGACCGCTCTCGCGTTCAAGTGCCACCTCTGCGAGGGGTCCTACGGCGACCGGGGCGGAGCCCTGAGGCATCTGGCCGAGTCGCACATGACGGAGTACGAGCAGCTCGTCAGCAAGGGCGCTTTGGACGCGGCCAGCGATCGTAGCGAGAGCGCCGACGACGATGACCGGGGCAAATTTCCCGATCACGCCAACAGAAAGGTGGTGTGCGCGTTCTGCGTCCGCCGCTTCTGGTCGGCCGAGGATCTGCGCCGGCACATGCGCACTCACTCCGGCGAGCGGCCGTTCGCCTGCGACCTCTGCCGGCGGCTCTTCACACTCAAGCACAGCATGCTGCGCCACAGGAAGAAGCACCGCGACGAGCCGACGGACGAGGACGAGCCGGGCACGCCGCCGGACGCCGCAGCGGCGCACGCGCACCCGGCGACCACCAACGGCTACCGTTTCGTCGACGACGACACCGGCAACGACGTGCCGAGCAACGTCAACAACAACAATTCCCCGCCGGCGGCACCGTACGACAAGAAACTCCAGCTCGAGACCATCACACGCAAGTACTCCTCCGAGGAGTGCGAGCCGGAGAACGGCAACGATCTCATCGGCAAACTTCTCGGCGTCACCGACCGAGGAATTATCAATAAGCTGCTCTCGTCGGCGGACGAGGCGGCCAAGTTTTTCGGCGTGAACAAATGA
- Protein Sequence
- MPAQVKTENLTDTKLEPEDDEKTACEPPRAALRASIDSDNRSSDEDERRARKRHASPDTQRTPDIKRPSRLQCNICRLRFDSTRALDLHRFTTHGEKTRAGFDDLTFVDFSSRKFPEIARGVCERSPHVSVTEPRYRCERCARDFPCGRALDMHRSACAAPARPPSPQRDRREDFFAQLDLRNSAFAGTLTPPLERFAKKHYEDSFTEDANARPVDAVRDLADIQSILNVTAAGGLLERLTGTRVSLENAALTPPDTGGKDREPEESQDRFAAEFRRMKLRGEFPCRLCSAKFPNLRALKGHNRVHLSGTGPGPYRCNMCPHASLDKAALVRHMRTHNGDRPYECAVCNYAFTTKANCERHLRNRHAKITREDVKRSIIYHPSEDPNNDEVNSKIGREEVKRSLAFHTPEPERRDEATGRDTPLSHFPPFVAEPRRPPALPPVLPDTPAPTPRDDRPLPRIKVKGIGQLTQIPEFREPEHYQQDDSEDAESFADEAPVDLSTSDNNDCDVLDLSKKKRDSDEEAPPQPPLARPPACPPAFDADQAAAAAATFEKTQRLFLAQRRLFESSLPKIDPAFYASQLSQLYPGVPGLPGLTGLPPSFPVNPYFLQPFFPPATDPQELAEIKERIQKEILRGLRLSGGGLVTPDSDNSQPRVEVVEEDQKPLHLDSTPPAPQPARPESPRQRRESLAPQSDSVKMVIKNGVLMPKQKQRRYRTERPFSCSQCSARFTLRSNMERHVKQQHPQHWSVRRPSPRAPPPYPTSVDSLADRMKFALLARQLERPMPPPVPGAGPGSADRSPVRRDSDDVADNEEDEEDALVIDEEEEPEPSELTAAHRAAAEILMATHRQEMAKDFDLKIAGNLISKPHIVSSDVDEHKEPSDSADDDIEIVAPAEPAVVSAPTVPTRSDEEEDEEGLVASTSEENNSGSDENRSETDVPGTQPPKKKSAYSLAPNRVSCPYCHRKFPWSSSLRRHILTHTGQKPFKCPHCPLLFTTKSNCDRHLLRKHGASSKPTIVESSPPQETPAPQQNNETNPNFALRNVPERPYKCASCPSSTFSTLDNLKKHMSSRHGLPDSRPASPHAAATQEGDERIAEISDSNETALAFKCHLCEGSYGDRGGALRHLAESHMTEYEQLVSKGALDAASDRSESADDDDRGKFPDHANRKVVCAFCVRRFWSAEDLRRHMRTHSGERPFACDLCRRLFTLKHSMLRHRKKHRDEPTDEDEPGTPPDAAAAHAHPATTNGYRFVDDDTGNDVPSNVNNNNSPPAAPYDKKLQLETITRKYSSEECEPENGNDLIGKLLGVTDRGIINKLLSSADEAAKFFGVNK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -