Nswa012873.1
Basic Information
- Insect
- Nematopogon swammerdamellus
- Gene Symbol
- -
- Assembly
- GCA_946902865.1
- Location
- CAMPPV010000408.1:52682-69716[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.019 1.4 10.4 3.0 1 23 264 287 264 287 0.93 2 9 0.087 6.6 8.3 0.2 2 23 312 334 311 334 0.96 3 9 0.052 3.9 9.0 5.4 1 23 356 378 356 378 0.98 4 9 2.5e-05 0.0019 19.4 0.2 1 23 382 404 382 404 0.98 5 9 0.079 6 8.4 0.2 1 23 409 432 409 432 0.83 6 9 0.42 32 6.1 0.1 3 23 439 460 437 460 0.95 7 9 9.2e-06 0.0007 20.8 2.5 1 23 466 489 466 489 0.97 8 9 5e-06 0.00038 21.6 1.0 2 23 497 518 496 518 0.96 9 9 1.5e-06 0.00011 23.3 0.7 3 23 526 546 524 546 0.98
Sequence Information
- Coding Sequence
- ATGGAAGCGAAAGAGGAGTGCTGTCGCTGCGGCTGCTGTTATGCTGTTATGACTGAACATGGCAAGCTGCAGCATTTTTACAACTTCGGTACTCCGGAAGAATACGCACAAATGCTGAAGGAGACGTTTGGTATTACGCTATCTAACACATCGGCTGAGGGCGGCGTCTGTGATTCGTGCGCGAGAAAACTGCGGGAAGCTAGCGGCTTTAAGAAGCTGGTTGTGAGCACGCAAGAACGTTTTCATAAGCTACTGCCTGGGAGGAGTGGCGCGAGATGGGATGACGGAGAAGACGACGAACCGATCAAAACGAAAATCCCACTTCTGAAGTGCAAGAGCAGTCCGCAATCCAAAATGGCGTCGAACGTTAAGAAGGCCCTCGCGCTGGCCGACCGCACGCGAATGATTTATAGAAGAACACGCCCTCAACTCAGTATGGAGAAGTTAAACCACGTCAACAGCTACATGAGAAATCTGATGGAGAAGAAAGGTAGCGACTACCAGCCGCCGTTCAAGCCGATAGTGCTGAGGCGGGCGGCCGCCGTCGACCGACCCAAGCCGGCCGTCAGGCAGATACGGGTGCCGAGGTTCAAGCTGCCGGCTAGGTCTGCCGCTAGCCGATTGGCGAGCAAGCTGAAAGTTTCAGACGTTGACCCCAATTCAACAAACACAGTCGGTGAGGGTCTGCTACCGGCGGAGAAGCGAGCCGCCAGACGTATAATAAAGCAAAACGCACTCGCCATACTCAAGAACACCACCGCCTGCCCATTTATATACTATCACAGTAATTTCCGCTGTTTTTACTGTCGCGAAACGTTTTTCGACTTCTATCTACTCAAATCTCACACGACGGAGATTCACAACGACGTCAAACAAGAGGCCAGGAAGATCAACGCGTTCAGAGATCTCATGATGGTAGACATATCATCCCTTAAGTGCAGGCGGTGCGATCAGGAATATAGCGACATCGAAAGCATAAAAGAGCATCTCATAACGATTCACGGCGTCTCGATCAACAGAAAACACAAAGACGACATAGCCGCGTTCAAACTCAACTCGGAAAACTTCAAATGTCACCTGTGCCAGGAAGAATTTCATGTATTCAGAAATTTGTCGCTGCATCTGAATAAGCATTACGCGAATTATATGTGCGACGTTTGCGGGAAACCGTTTATAAGCTGGGAGAGGTATAAAAATCACGAAAACACTCACGTCATGGGTAGTTTTCCGTGCACAAAATGCAACCAAGTCTTCAATACGGTCAAAGGGCGCGCCGCGCACTCGATATCGGAGCATAGAATAACGAGGTACGGCTGCCCCCTGTGCTCGGAACGCTTTGAGAAATATCTCGAACGCACCGTTCATATGTCGGTCGCGCACAACATAACGCACAAGTTTAAATGCCCTCAGTGCCCGAAAGAATTCTTTCACAAGCCGCACCTCCGCGCCCATATTAACAACGCGCACCGACCGAGAGAGAAAAAAGTGGAATGCCACGAGTGCGGGATGCGTTTTACGGATAATAATTCGTTGTCGCGACATATGGTCTCGCACACGGGGGAGAAACTGTTTGGTTGCAAAATATGCGGGAAGAAATACGGACGCAAGTATTCGCTGACGGAACACATGCGGGTGCACACCAAGGGACACGCGAGGAGTGCGGGGGGCTGCGGGGAGTGGGGAAGAATAAGCGCGCCCGCCCGCGCGCCAGCAGCTCATCGTCCCGCACCGCGACCGACGAGACGACACGCGAGCGTCGTCGATGCTCGCGGCTCGCTATTCCGCCCGCCACCTCTGTCGTCCCACTACAACGCCGTTCCGCCGCGCCGTCCTGCCGCCTATGGAACGAAAATGTAG
- Protein Sequence
- MEAKEECCRCGCCYAVMTEHGKLQHFYNFGTPEEYAQMLKETFGITLSNTSAEGGVCDSCARKLREASGFKKLVVSTQERFHKLLPGRSGARWDDGEDDEPIKTKIPLLKCKSSPQSKMASNVKKALALADRTRMIYRRTRPQLSMEKLNHVNSYMRNLMEKKGSDYQPPFKPIVLRRAAAVDRPKPAVRQIRVPRFKLPARSAASRLASKLKVSDVDPNSTNTVGEGLLPAEKRAARRIIKQNALAILKNTTACPFIYYHSNFRCFYCRETFFDFYLLKSHTTEIHNDVKQEARKINAFRDLMMVDISSLKCRRCDQEYSDIESIKEHLITIHGVSINRKHKDDIAAFKLNSENFKCHLCQEEFHVFRNLSLHLNKHYANYMCDVCGKPFISWERYKNHENTHVMGSFPCTKCNQVFNTVKGRAAHSISEHRITRYGCPLCSERFEKYLERTVHMSVAHNITHKFKCPQCPKEFFHKPHLRAHINNAHRPREKKVECHECGMRFTDNNSLSRHMVSHTGEKLFGCKICGKKYGRKYSLTEHMRVHTKGHARSAGGCGEWGRISAPARAPAAHRPAPRPTRRHASVVDARGSLFRPPPLSSHYNAVPPRRPAAYGTKM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -