Nswa001284.1
Basic Information
- Insect
- Nematopogon swammerdamellus
- Gene Symbol
- -
- Assembly
- GCA_946902865.1
- Location
- CAMPPV010000033.1:979290-1010588[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.57 43 5.7 0.7 1 21 108 128 108 129 0.94 2 13 0.0045 0.34 12.3 0.5 1 22 142 163 142 163 0.93 3 13 0.28 21 6.7 1.5 2 23 179 201 178 201 0.97 4 13 2.7 2e+02 3.6 1.8 2 23 292 313 291 314 0.92 5 13 7.4 5.6e+02 2.2 0.2 2 23 373 395 372 395 0.92 6 13 1 76 4.9 0.3 2 20 401 419 400 421 0.92 7 13 0.0021 0.16 13.4 0.6 2 23 430 452 429 452 0.90 8 13 0.031 2.3 9.7 0.5 1 21 469 489 469 490 0.92 9 13 0.00012 0.0093 17.3 3.8 2 23 498 520 497 520 0.94 10 13 1.7e-06 0.00013 23.1 0.3 1 23 529 551 529 551 0.95 11 13 0.00064 0.049 15.0 3.0 1 23 557 579 557 579 0.96 12 13 3.4e-05 0.0026 19.0 0.9 2 23 586 607 585 607 0.95 13 13 0.00014 0.011 17.1 1.1 1 23 991 1013 991 1013 0.99
Sequence Information
- Coding Sequence
- ATGACTTCACTGTTCATTTTGGAACAGACCTGCCGTCGCTCCTACAATCACATGATGCGTTCCATCATCGGCTTTGAGGCCATAGAGGATGACAAGTTGCCTTCACGCCTATGTCGTGACTGTAAGGAGACTTTGATGAAAGCGTACAACTTCCGAATGCAGGCGAAAAGAGCTGACAACATACTTCGAAACAGCTCACACTCCGGTGGGGATCGGCGTGAAGATGACGCCATAGAGGCCAAGACGGAATTCATGGATTATGAACCGCTCGACAACTGGGATGCTTATGAAGATTTCAGTGAGACTAAGCCCGAAGTGTCTCACAAGTGTTCAACATGCCTCGGAACATTCCCTACGCTGCAGAAGTTGAACATTCACACCCAGAGTTGTCAAGAGTCCAAGAGCAGTGTGCGGTTCGCGCCTCACGTCTGTTCAACTTGCGACAGTACATTCTCTACTCTGGAGTTGCTCAAATCTCACGCACAAACTTGTCAAGGAAAATCTATTAAATCCGAATCAGCGGCAAGGACGAATCAGTGTCGGCTGTGTTTGCAAAGTTTCAACAACGCCCTAGTGCTACTGCACCACGTCAGGACGACTCACCGAAACATATTGAGTAGTAAGGACAATGTCAAAGGTAACAAGCCCATTAAGAAAGAGCACAAACATGGAAGGAATGTTAGAAAAATGTCGCGCGACAGTTTAATGCATCAATGCCACATTCCCGTCCGCAACGTCGTCGCCAAGGAGAAGGAGAAGGATGAGAAGTCAGAACAAGGGAAGAAATCGAGGTGTGGAGTGTGCAGCTTACTGTTTGCCACCGACACAGAGTTGGACGACCATTGCAGGGAACACGGAGCGACGGAGGTGATAATGTGTGCGTTGTGTGAGCGGGTGTACCTGAAGTACTCACAGTTCAAACGTCACTTCACCGTCCACCATCCAGAGATGGAAGTCGTCAATCAAACTGAGAACACGGAGACAATATTTGAGATAAAGGATGCAACAGCTATGCAGGAGGTCGTGCAGCATGTTCGGATGACGAGTATCGGCGACTTGATAATGTCCAACGTGCCCCCTTCTGATGAACCTATTGAGATCGAGGCGTACGTGCAAGTGTGCGGTCTCTGCGGGTGCGTCATCCTGTCACCGGAGGATCTGAAGCTTCACAACCAAACCGAACATCCGGACCACGCGATGAGGTGCTACTTTTGTGCCATGGTGTTCACGAACGAGCTGCTGCTGCGTCAGCACCGCTACCGCTGCAGGACGCTGGAGCTGCAGCTGGAGTGCCTGCAGTGCGGCCAGCGGTTCTACCGGCAGCACGGCCTGTTGCGCCACGTCGCCGCGCGGCACCCCGACCACTTCGGCGAGTTCTGTCGCCGCATCGAGAGCGTCAAGGACTACCTGTGCGGCACGTGCGGGAAAGCTTTTCATCTGAAGCTACAGCTGAACAACCACGTGAAGTCGTGCGGGCCGGAGATAGTGGTCGAGTGTGATATCTGCCACAAGTCATTCAAGAAGAAACACTTTCTGGAACGTCACATAGAAAACATGCACAATCCGGAAGGCATAGTCAAGTCATTCCTCTGTGCGATCTGCGGCAAAGTGTTTCGCAGGAACAACCAGTTGATTCTTCACGTGCGTACGCATACCGGCGATTGCCCATACAAGTGCAGTTACTGCGGGAAGGGGTTCCCGACCCGCCACGCCTGGAAGTACCACGAGTTCAGGCACACGGGGGACTCGCCCTGTGTGTGCACAGTGTGCGGCAAACGATTCATCCGCAACGCGTCGCTGGTGCGACACAATATGATCCACACGGGAGAGCGGCCCTACAAGTGCGATCAGGTTCATCCGCAACGCGTCGCTGGTGCGACACAATATGATCCACACGGGAGAGCGGCCCTACAAGTGCGATCAGTGCGGCGCCGGCTTCATATAGAAACAGTGCCTCGTGGCACACTTGAAGTATCCAACGATAATGTTACTGATATAACTGCTCTTGCAGGGTTCATCCGCAACGCGTCGCTGGTGCGACACAATATGATCCACACGGGAGAGCGGCCCTACAAGGTTCATCGGCAACGCGTCGCTGGTGCGACACAATATGATCCACACGGGAGAGCGGCCCTACAAGTGCGATCAGTGCGGCGCCGGCTTCATATAGAAACAGTGCCTCGTGGCACACTTGAAGTATCCAACGATAATGTTACTGATATAACTGCTCTTGCAGGGTTCATCCGCAACGCATCGCTGGTGCGACACAATATGATCCACACGGGAGAGCGGCCCTACAAGGTTCATCCGCAACGCGTCGCTGGTGCGACACAATATGATCCACACGGGAGAGCGGCCCTACAAGTGCGATCAGTGCGGCGCCGGCTTCATATAGAAACAGTGCCTCGTGGCACACTTGAAGTATCCAACGATAATGTTACTGATATAACTGCTCTTGCAGGGTTCATCGGCAACGCGTCGCTGGTGCGACACAATATGATCCACACGGGAGAGCGGCCCTACAAGGTTCATCCGCAACGCATCGCTGGTGCGACACAATATGATCCACACGGGAGAGCGGCCCTACAAGTGCGATCAGTGCGGCGCCGGCTTCATATAGAAACAGTGCCTCGTGGCACACTTGAAGTATCCAACGATAATGTTACTGATATAACTGCTCTTGCAGGGTTCATCCGCAACGCGTCGCTGGTGCGACACAATATGATCCACACGGGAGAGCGGCCCTACAAGGTTCATCCGCAACGCGTCGCTGGTGCGACACAATATGATCCACACGGGAGAGCGGCCCTACAAGTGCGATCAGTGCGGCGCCGGCTTCATATAGAAACAGTGCCTCGTGGCACACTTGAAGTATCCAACGATAATGTTACTGATATAACTGCTCTTGCAGGGTTCATCCGCAACGCGTCGCTGGTGCGACACAATATGATCCACACGGGAGAGCGGCCCTACAAGTGCGATCAGTGCGGCGCCGGCTTCATACAGAAACAGTGCCTCGTGGCGCACTTGAAGAAACATTACTCCACTGAACCGAGTCTCAACCTTGACCCGGAACCGTTCAAGAAAGCCCACGCATCAGAATGGGACACCAAGGACGAATCATTGTCAACTGAAACGATAAAGTATGAGGAGGCCGCTTCTCCGAAGATGGCCGAAGTGGAGATGATGAGAGCGTTCTCGAGACCGAGGAAGCCGGGCAGCAAGAATACGGACGGACGCGACGCGAGTGAACGCAAACAGATAGCCCGCCCCGCCCGCGCCGCGCCGCCGCCGGCTCCGCTCGCGTACCGCCCGCCGCTAAAGGCGCTCACACATTGTAGTATGCATTTAGTTTATTAG
- Protein Sequence
- MTSLFILEQTCRRSYNHMMRSIIGFEAIEDDKLPSRLCRDCKETLMKAYNFRMQAKRADNILRNSSHSGGDRREDDAIEAKTEFMDYEPLDNWDAYEDFSETKPEVSHKCSTCLGTFPTLQKLNIHTQSCQESKSSVRFAPHVCSTCDSTFSTLELLKSHAQTCQGKSIKSESAARTNQCRLCLQSFNNALVLLHHVRTTHRNILSSKDNVKGNKPIKKEHKHGRNVRKMSRDSLMHQCHIPVRNVVAKEKEKDEKSEQGKKSRCGVCSLLFATDTELDDHCREHGATEVIMCALCERVYLKYSQFKRHFTVHHPEMEVVNQTENTETIFEIKDATAMQEVVQHVRMTSIGDLIMSNVPPSDEPIEIEAYVQVCGLCGCVILSPEDLKLHNQTEHPDHAMRCYFCAMVFTNELLLRQHRYRCRTLELQLECLQCGQRFYRQHGLLRHVAARHPDHFGEFCRRIESVKDYLCGTCGKAFHLKLQLNNHVKSCGPEIVVECDICHKSFKKKHFLERHIENMHNPEGIVKSFLCAICGKVFRRNNQLILHVRTHTGDCPYKCSYCGKGFPTRHAWKYHEFRHTGDSPCVCTVCGKRFIRNASLVRHNMIHTGERPYKCDQVHPQRVAGATQYDPHGRAALQVRSVRRRLHIETVPRGTLEVSNDNVTDITALAGFIRNASLVRHNMIHTGERPYKVHRQRVAGATQYDPHGRAALQVRSVRRRLHIETVPRGTLEVSNDNVTDITALAGFIRNASLVRHNMIHTGERPYKVHPQRVAGATQYDPHGRAALQVRSVRRRLHIETVPRGTLEVSNDNVTDITALAGFIGNASLVRHNMIHTGERPYKVHPQRIAGATQYDPHGRAALQVRSVRRRLHIETVPRGTLEVSNDNVTDITALAGFIRNASLVRHNMIHTGERPYKVHPQRVAGATQYDPHGRAALQVRSVRRRLHIETVPRGTLEVSNDNVTDITALAGFIRNASLVRHNMIHTGERPYKCDQCGAGFIQKQCLVAHLKKHYSTEPSLNLDPEPFKKAHASEWDTKDESLSTETIKYEEAASPKMAEVEMMRAFSRPRKPGSKNTDGRDASERKQIARPARAAPPPAPLAYRPPLKALTHCSMHLVY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -