Nswa029686.1
Basic Information
- Insect
- Nematopogon swammerdamellus
- Gene Symbol
- -
- Assembly
- GCA_946902865.1
- Location
- CAMPPV010001396.1:18669-39684[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.00062 0.047 15.0 1.2 1 23 320 342 320 342 0.95 2 11 0.91 69 5.1 0.9 1 23 348 371 348 371 0.87 3 11 0.3 23 6.6 0.5 3 23 384 405 383 405 0.93 4 11 0.0052 0.39 12.1 0.4 1 23 411 434 411 434 0.97 5 11 3.8e-05 0.0029 18.9 0.1 1 23 633 656 633 656 0.96 6 11 0.0034 0.26 12.7 1.2 2 23 660 681 659 681 0.96 7 11 0.061 4.6 8.8 3.8 1 23 703 726 703 726 0.96 8 11 6.9e-05 0.0053 18.0 0.1 1 23 732 754 732 754 0.97 9 11 0.0019 0.15 13.5 1.3 3 23 762 782 761 782 0.97 10 11 2.3 1.8e+02 3.8 0.1 1 23 788 811 788 811 0.83 11 11 0.0069 0.52 11.8 0.6 2 23 816 838 816 838 0.96
Sequence Information
- Coding Sequence
- ATGTGCCGCTGCGGCCGACGCGCCAGCTGCTACAGACTACCTAGAGACACGACTCGTGTCACGGACGGCAGCGAGCGCGCGGACGGCGCGTCCGCCGCGTTCGGTCGCTCGCGAGCTACTAGTCACAAGAGGGTCCCTCCGCGTAATGCAGCGTCAGCCAAAGAAAATAATATAGTGCCCGGGACGGATCTCGGCGTGTCGTCGCCGCAGCGGGCGACCCGCCACGCGAATAAACTATACAATTACGGTGCGGGTGCGAGGGAGAACACCGACGAACCGCTGCGGCGGCGACACGCCAAGATCCGCCCCGCGCATTATACTACCTGTCAGGTTAGGTTAGGAGGGACTGGCTGCTGTCGATTCGTGGAATCGAGGATGGCCGAGGAGGAGAAGTGCGACACGGCGCGCGCGGAGTTCCGCTCGCTGCTGCTGGACGTGGTGCGCGAGGGCGGCGCGCTGGCGACGCGCGTGTGCCGCGTGTGCCTGCGCCGCGCCGACGATCTTGTGCGCCTCACCGACACCTGCAGTGTTCAGGTGCGCGCCGCCGCCGTCACCCACCACACACTCTTGTTCCCACAAGCAATCAAGCCGTGTGCGGGCACCTACACACTCTCCGAGATACTCAGCCACGTCACGAGAAGCAAGGTGGAGGAGGAGCGCGTGCTGCCGGGTGGCGTGTGCGCGCCGTGCGTGCAGAGCTGCGTGGAGGCGTACATCTTCATGCGCACGTACGAGCTGAACGCGCGCGCGCTGGAGAAGTGCGTGGACTACCTGGCGTACCACGTGGAGGGCGAGGTGGGCGCGCAGCAGGAGCGCCTCGTCATCAGCGTGCTGCCCGAGCTCAGCCACTACAAGATCTTCGACGACCTCAACATTCAGAATGTCCAGTTCCACACCCCGGAGGCGGCCGTGGAGGAGCTGTGCTGGGCGAAGCTGCTGCGGCCGGAGCCCAAGCGGCACGAGTGCTCCATGTGCGAGCGCTCCTTCACCACCCGCCTCCTGCTGCGCCAGCACGAGGCCGTACACCCGCCACACTCCAAGCACATCTGCAGGATCTGCGGCAACGGGTACAAGCAGAAGCGGATCCTGGCGCGACACACGGTGCAGCGGCACGGCAGCGACGGCGGCGCCGACCTCAAGCGGCTCCTGTGCGTCATGTGCGGCAAGCTCTACTCCTCCCCCTACACGCTCTTCTGCCACCAGGCGGTGATCCACGGAGCGGCGAAACTGTACTACTGCTCGACGTGCGGGTACCGTGGACGCAGCGAGGACGGCATGTTGCGCCACATCCGACTGTATCACCCGCGCGACCCCGACGCACACTACTCCGTACTCGAGCCTAACGACGAGCTGCGCGCACAGCTCGACACGGCCTCCGAAGCGGACCTGACGCTCATCGCGCATCACATACTCGAGCCTAACGACGAGCTGCGCGCACAGCTCGACACGGCCACCGAAGCGGACCTGACGCTCGTCGCGCATCACAGTGACGCGGAGCCTAACGACGAGCTGTGCGCACAGCTCGACACGGCCACCGAAGCGGACCTGACGCTCACCACGCATCACAGTGACGCGGAGCCTAACGACGAGCTGCGCGCACAGCTCGACACGGCCACCGAAGCGGACCTGACGCTCACCACGCATCACAGTGACGCGGAGCCTAACGACGAGCTGCGCGCACAGCTCGACACGGCCACCGAAGCGGACCTGACGCTCACCACGCATCACAGTGACGCGGAGCCTAACGACGAGCTGCGCGCACAGCTCGACACGGCAACCGAAGCGGACCTGACGCTCATCGCGCATCACAGTGACGCGGAGGAGGCGGACGGGGTGGAGACGGTGCGCAAGGTGCGCGCGGCGCGGCGCCCGTCGGACGCGGCCGCCGGAAGCACCTTCATGTGCGACGTGTGCGCGCGCGTGTTCCCGCGCGCCTCGAGCCTGCGCCGCCACGTGGAGCGCGAGCACGCGCACCTCGAGTGCAAGCAGTGCCGCAAGGTGTTCCGCATCCGAAGCCGCTACGAGGGCCACATGCGCCTCCACGCCGCAAACCCGGACCTCAAGGTACCTACACTGCACTCCTACTGGGCTCTCTATTGTAATGTGTTCAAGTGCGACTACTGCGCGTACTCTGCGAAGCAGCGGCGGCACCTGGTGCAGCACACGACGCGGCGgcacacgaacatccggccgtactcgtgcgaggtctgcggcaagggcttcgtcaagcagaacgaggtgcgctcgcacatggtggtgcacacccgcgagcgccccgagctctgcgccctctgccacaagcgcttcgtcaacaaggccgcgctgctctaccacacgcggctgcacacgggcgagaagccgtacgcgtgcgcgcagtgcggcgagcgcttcCTGTCGGCGTCGCGGCGCGGCGCGCACGTGCGCTCCAAGCACGGCCCGCGGCCCCAGTGCGCCGTCTGCAAGTCCACCTACACCAACAACCAGGTGCTGCAGAAGCACATCCGCAACGTGCACATGAAGAGCGCCGCACTCTTCAAGGACGCGCGCGCCAAGAAGATCGGCAAGCTGCGCCTCTCGCGCCCGCCCAGCCCCGCCGCCTACGAGCAACCCTGGTGA
- Protein Sequence
- MCRCGRRASCYRLPRDTTRVTDGSERADGASAAFGRSRATSHKRVPPRNAASAKENNIVPGTDLGVSSPQRATRHANKLYNYGAGARENTDEPLRRRHAKIRPAHYTTCQVRLGGTGCCRFVESRMAEEEKCDTARAEFRSLLLDVVREGGALATRVCRVCLRRADDLVRLTDTCSVQVRAAAVTHHTLLFPQAIKPCAGTYTLSEILSHVTRSKVEEERVLPGGVCAPCVQSCVEAYIFMRTYELNARALEKCVDYLAYHVEGEVGAQQERLVISVLPELSHYKIFDDLNIQNVQFHTPEAAVEELCWAKLLRPEPKRHECSMCERSFTTRLLLRQHEAVHPPHSKHICRICGNGYKQKRILARHTVQRHGSDGGADLKRLLCVMCGKLYSSPYTLFCHQAVIHGAAKLYYCSTCGYRGRSEDGMLRHIRLYHPRDPDAHYSVLEPNDELRAQLDTASEADLTLIAHHILEPNDELRAQLDTATEADLTLVAHHSDAEPNDELCAQLDTATEADLTLTTHHSDAEPNDELRAQLDTATEADLTLTTHHSDAEPNDELRAQLDTATEADLTLTTHHSDAEPNDELRAQLDTATEADLTLIAHHSDAEEADGVETVRKVRAARRPSDAAAGSTFMCDVCARVFPRASSLRRHVEREHAHLECKQCRKVFRIRSRYEGHMRLHAANPDLKVPTLHSYWALYCNVFKCDYCAYSAKQRRHLVQHTTRRHTNIRPYSCEVCGKGFVKQNEVRSHMVVHTRERPELCALCHKRFVNKAALLYHTRLHTGEKPYACAQCGERFLSASRRGAHVRSKHGPRPQCAVCKSTYTNNQVLQKHIRNVHMKSAALFKDARAKKIGKLRLSRPPSPAAYEQPW
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -