Nswa020604.1
Basic Information
- Insect
- Nematopogon swammerdamellus
- Gene Symbol
- topi
- Assembly
- GCA_946902865.1
- Location
- CAMPPV010000753.1:591264-613200[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 1.1 87 4.8 4.7 2 23 108 129 107 129 0.96 2 11 1.6 1.2e+02 4.3 0.1 2 23 133 154 133 154 0.95 3 11 0.094 7.1 8.2 4.7 1 23 157 179 157 180 0.94 4 11 0.00056 0.043 15.2 0.2 1 23 237 260 237 260 0.93 5 11 0.1 7.6 8.1 0.1 2 21 266 285 265 286 0.92 6 11 0.0076 0.57 11.6 0.1 2 23 307 329 307 329 0.91 7 11 0.00017 0.013 16.8 2.5 1 23 342 364 342 364 0.98 8 11 0.00098 0.075 14.4 0.2 1 23 370 393 370 393 0.91 9 11 5.4e-05 0.0041 18.4 4.2 3 23 401 422 399 422 0.93 10 11 0.0079 0.6 11.6 1.1 1 20 428 447 428 450 0.91 11 11 0.00033 0.025 15.9 0.7 3 23 458 479 457 479 0.96
Sequence Information
- Coding Sequence
- ATGATGGAGGTGGCAGCGTGCCGTGTATGCCTGCAGCCGGCCGCCGTGTCGCTGGAGAGTTCGCGCACGTTCGGGGACACCGCCCAGGCCCACACTGTACTACAGTTGCTGCTGATGACTTTCTCGTCGGTCAAGTTGTTAGAGCAGCATCGACTTGCACACGCAGAGCTGGATAACAATGAGTTAGAGCGAGAAGGCACTGTGAAAGGGCACACAGAGAATGTAGAAATCGAGATGGAACTAGAAGTAAAGGCTGGAATGGGATTGGAGTTTGACTATGTGGAGGAGACACCAAAATTTGGGCTCACAAGAAGAAAGGTTCAATGCAAGCTGTGCGGGTCTTTGTTCAAGAATCACACTTGTTACCTTCAGCACCGAGCTTCGCACAAGTCGAACGTGTGCCGTCGCTGCAACCGCGGCTGGTCATCGCGCGCGGCGCTACTCGAGCACGCGCGCGAGCACAGCACATACGATTGCGTACGTTGCATGCGCTCGTACTCATCACGCGCGGCGCTGCACACGCATTATAGAAGACATCATAGTGTTATCACGGCCGAGCAAGCACTGTCGCTGGTCAACGGAGAGACGCTCACAGCTCGCTCTGATGATACACAAACAGAACAGAGCGGCACGGAGCCGGCGGCGGGCGGTGCGGCGGAGCGCGCGGGGCGGGGGGCGGAGGGCGACGGCGGCGGGGCGGGGTCGGGGCACGCCTGCAGGCTGTGCGGCGCGGTGCTGACGCGGCGGTACAATCTGCTGCGGCACCTGGCGGTCGCGCACGGCCGCTACACGCTGCAGTGCGCGCGCTGCGACCTGAGGTTCAACAAGCCGGCGCTGTACGAAGTCCACAAGATGAGCTGCAGTAACCCCGACGAGCTGTTGCAAGAAAAGGAGGATTTGAGCAAGCAACGCCTGCCAGTGTGTCCTGTTTGCGACGAGAAGTTCAAGAAGCGTCAGCTGATGCTGGAGCACCTGGAGGCGGCGCACAGCGAGCAGTGCTCCGTGGACCTGGTGAACCAACACTACTTCTGCAAGATCTGCAAGAAGACCCTCAGCACCAGGCCAGGCTTCAGCTACCACATGCGGACGCACAGCGGCTTCCCGCGGCACGCGTGCCCGCTCTGCGAGCGGCGGTTCACTGCGCGCGCGGCGCTGCGCAACCACATCGCCGGCCGGCACACGCATCTGCGGCCCCACCTCTGCCAGCAGTGCGGTCGGCGCTTCGTCAGCTCAGATCACCTCCGCAAGCATCTACAGTTGACGCACGGCGGCCGCAGAGACTACCTGTGCATGCAGTGTGGGCTAACGTTCCAGCAGTCCTCGCACGTGCGCCAGCACCAGTGGGTGCACACCGGAGTGAAACCGCACGGCTGCCAGTACTGTCAGGGACGGTTCTCCTCTAAGGGAGCTCTCAAGAAGCACATGTCTCAGCTGCACAACGCAGAGTGGACTCGCGACAGAGACCGCGTCGAGCAGGACTACCGGCGCCGCGAGCTACTCCAACTACAGAAGACGGATTAG
- Protein Sequence
- MMEVAACRVCLQPAAVSLESSRTFGDTAQAHTVLQLLLMTFSSVKLLEQHRLAHAELDNNELEREGTVKGHTENVEIEMELEVKAGMGLEFDYVEETPKFGLTRRKVQCKLCGSLFKNHTCYLQHRASHKSNVCRRCNRGWSSRAALLEHAREHSTYDCVRCMRSYSSRAALHTHYRRHHSVITAEQALSLVNGETLTARSDDTQTEQSGTEPAAGGAAERAGRGAEGDGGGAGSGHACRLCGAVLTRRYNLLRHLAVAHGRYTLQCARCDLRFNKPALYEVHKMSCSNPDELLQEKEDLSKQRLPVCPVCDEKFKKRQLMLEHLEAAHSEQCSVDLVNQHYFCKICKKTLSTRPGFSYHMRTHSGFPRHACPLCERRFTARAALRNHIAGRHTHLRPHLCQQCGRRFVSSDHLRKHLQLTHGGRRDYLCMQCGLTFQQSSHVRQHQWVHTGVKPHGCQYCQGRFSSKGALKKHMSQLHNAEWTRDRDRVEQDYRRRELLQLQKTD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -