Nswa025656.1
Basic Information
- Insect
- Nematopogon swammerdamellus
- Gene Symbol
- -
- Assembly
- GCA_946902865.1
- Location
- CAMPPV010001092.1:50281-64416[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 5.7e-05 0.0044 18.3 5.9 1 23 368 390 368 390 0.98 2 13 0.055 4.2 8.9 3.7 1 22 455 476 455 476 0.96 3 13 0.36 27 6.4 1.4 5 17 546 558 543 564 0.87 4 13 0.00014 0.01 17.1 1.3 1 23 573 596 573 596 0.97 5 13 0.013 0.98 10.9 1.4 1 23 601 623 601 623 0.95 6 13 8.5e-05 0.0064 17.8 0.2 2 23 645 667 644 667 0.95 7 13 0.055 4.2 8.9 2.3 1 23 671 694 671 694 0.98 8 13 0.00096 0.073 14.4 0.3 2 23 717 739 716 739 0.93 9 13 0.00075 0.057 14.8 3.3 1 23 757 779 757 780 0.95 10 13 0.005 0.38 12.2 4.7 3 23 811 831 810 831 0.97 11 13 0.094 7.1 8.2 1.1 1 23 837 859 837 859 0.92 12 13 3.5 2.6e+02 3.3 4.3 1 22 865 886 865 889 0.90 13 13 0.0025 0.19 13.1 0.4 2 23 937 958 936 958 0.97
Sequence Information
- Coding Sequence
- ATGTCAATAACGCCGAGGGACAACGAATGCATGCAAACCAGGGCGATGGCGGCGGCCGCGCTGAACAATGACGAGGAACAGCGTGGCGTCGTAGAAGAGGTCCAGGACAGTACTTCACAACCTCCGGAAGTGGAGGAAGAAGCAACATCCAAGAACCCGAGCTCATTCAATATGGCCGGGCTCATGAAAATGCTAAGCGGAATGGCCGACGAAAATCGTCGCTCTACGGAAGGAAGTCGGCAAGCCATGGAGCGTCTCGAGGCCAAGTCGGAGGAGAGTCGACGAGCTACAGAGGAAAGTCGGCAAGCGATCCTGGACACAGTAAACGGGGCGCTGTCCACGTTGCGCCAAGACTTGGAGAAGGTGACCGGCAAAGTGGAGGAGCAGGATGCCATGATGGTCAAGGAGACAACCACCCAACGCAAGCGACGCCTAGCGAAGGCGAAGCAAAAGCGACAAGAGAAGCTTCAACAGGAATCGGAAGCTGATAAGTCTGCAAGATTAGCCAAACAACGGCACGGTGTAAAAGCGGAAGGGACTGTTGAAATTAAACAGGAAATGGATACGGGCGATGTTTTCACTCCGGAAGTGTCGATATCGTATGATTTACCAAATGCTGATGATGCGGGTGGAATCTCAGGGATGGAGCGGTCTAAAGGGGAGAACTTGAGGGACAGTCTGCAGGAGGAGATTGTTCTGAAGGTGGAAGCTGAGGACACGGGTTATGAAGGGGGTGATTGCCCGAGAGAGGAACACTTCGATGAGGGCCGCATAAAAATAGAACATTCTGCATTAGACTCCCAAACTGTAACAAAAAGTATCATCAGCACTCACTCTGTCCATGCGGTAAGTCAAAGCTCCCATTACGGAGGTATCACGATGCAAATCTTACCCATGGATACATCTGGAAACAATTCATCTTTCGGCAATGTCCCAAAAATACGTCTCTCATCGCAGTCCGCTCCGGATCAAATGACCCAACTCCACGTCTACAATTCAGATTTCCAGCTAAACTCCATCACCGGGGACATGCTGTCCCTAGAACAGGAAGCGTACGGCCTCCTCGAAGCCAAGAACACCAAAAGAGAGGTCGCCCATCCTTACATGTGCCCAAAATGCCCAAAAACATGCAAGGACAGACATTCGTTCCAACGACACCTGAAGGTTCACGAAACTATCGAGCGCAGAGCAGACGGCGTCGCCAGGGGCAAGAAGACTAGAGAACTCAACAAGAAGAAGGTCATTAAAGAAAATATCATTAAAAAGAAAGAAGTCAACTTAATGAAAATAGGAACTAGTAAAGATCTGTCGCTCGTACCTTACCACTACAATAAGGATTCCAAGGAGCCGAGGAAAGGCAACTACAAATGCACAACCTGCGAAAAGCAATACCGCGTGCTGCGTTGCTGGAGGCGTCACCAACGCTCCTGCCAGGGGGTAAAATTGGATCCGAACATCATAATAGATAACCGAATTAACATCAGGAGGGCCGTGCGGAAAGAAAAAGTCAAGCGCGTGTATAAGGATGACCCAAAGATACAACCGGTAAGGGTGGTGGCTAAGATGAAGATCGGCTCGGGAAGTGAGAAAATTCAGCCGGCAGTTAAGAAAAGAGATAACGAGGATTATAAATGCGAATGCGGAAAAACTTTCAGTCGCCGAAGTCGACTCGAGACCTGCCTGCGATCCCACCATCCGGAGGCTGAATCTCGGACGTACTCCTGCGCCGTTTGCAGTAAATCCTTCAAGGAAAAGGGTGAGCTCATGCAGCACAAAAAACGCCAGCATGTTAAGAAAAAATTCCTCTGCAAATTTTGCCCAATGGATTATCACACACCAAAGGAACTGTTTGACCATTTAAGAGTTCACAAGAAGGTTCAAATGATGGAGTTCAAGGTTATCAGCGAGGTGGTGGAGGGCAAGCAAGTTTTGAAGTGTTTCATTTGCAGCAAGACTTTCACGGAGCTCTCGGAATTAAAGGCCCACGTTCTAGTCGACCACAAGGAGCCTTACACCTGCCGTCACTGTCGCCAAAACTTCCCCAAGATTGTCGACTTTGCGACGCACACGAAAACCGCACACCCAGAAGTCGAGGGAAAATCTGTATTAGATGTGCTCGAATCGTTTTCAATTCTCGCGCAGGCGTGGAAGTGTGAGGAGTGTCACGTCCAGTTCGAAGACCCGGACGACCTCGTAAAGCATCAGACGGAACAACACGGTCCAGTGAGCAAGAAACCGACCGAGACTGAAGAAAGCTCCAAGTTTCAATTTCGCTGCGAAGACTGTCGACGGACTTTCGTCACTCTCAAACAACTGTCGACTCACAGAGACTTACACCACACGATAAAGGATCAGAATCTCACACAGAAAGATGATACAGAAAGTGCAGTTCCAGTGAGGGTTCCGACGCCGCCGCCACCTCTACCGATGTGCGTTCACTGCCGAAAGGTTTGCAAGGACGAATCAACCCTAACATCTCACCTTCGACTGCATTCGGCGGATCGGAAATATCCGTGCAAGTTTTGTGATTTCCGGTTCACGACCATCGAAAAGAGAAAGAACCACGCGGTCATACACACAGGGGATATGAAATATGTCTGCTTCGTCTGCGAGTACCGGTGCAGCTCGGAGAATAGACTAAAATACCATAAGCAATCGCAGAAACACCTCGATTTAAAGGAAGCCTTGTTAAACGGTCCTCCGTATGAACCGCAGGCTCCAATAATACAACCAGCCCGCCCTCCTGAGGTTAAGAAGAAGCGACATTCATCAGAAAGAAAGAGATCAGATAGTTCAGATGTACCGTCAAAGTGTGACATTTGCGGAGAAGATTTCCCAAACGAAAAGACGATGTTAAAACATAAAGACACACATCCGTTCATCGTGTTCCCGAATGAAGATGAGCCGACGAGGATATTCTTCAAGTAA
- Protein Sequence
- MSITPRDNECMQTRAMAAAALNNDEEQRGVVEEVQDSTSQPPEVEEEATSKNPSSFNMAGLMKMLSGMADENRRSTEGSRQAMERLEAKSEESRRATEESRQAILDTVNGALSTLRQDLEKVTGKVEEQDAMMVKETTTQRKRRLAKAKQKRQEKLQQESEADKSARLAKQRHGVKAEGTVEIKQEMDTGDVFTPEVSISYDLPNADDAGGISGMERSKGENLRDSLQEEIVLKVEAEDTGYEGGDCPREEHFDEGRIKIEHSALDSQTVTKSIISTHSVHAVSQSSHYGGITMQILPMDTSGNNSSFGNVPKIRLSSQSAPDQMTQLHVYNSDFQLNSITGDMLSLEQEAYGLLEAKNTKREVAHPYMCPKCPKTCKDRHSFQRHLKVHETIERRADGVARGKKTRELNKKKVIKENIIKKKEVNLMKIGTSKDLSLVPYHYNKDSKEPRKGNYKCTTCEKQYRVLRCWRRHQRSCQGVKLDPNIIIDNRINIRRAVRKEKVKRVYKDDPKIQPVRVVAKMKIGSGSEKIQPAVKKRDNEDYKCECGKTFSRRSRLETCLRSHHPEAESRTYSCAVCSKSFKEKGELMQHKKRQHVKKKFLCKFCPMDYHTPKELFDHLRVHKKVQMMEFKVISEVVEGKQVLKCFICSKTFTELSELKAHVLVDHKEPYTCRHCRQNFPKIVDFATHTKTAHPEVEGKSVLDVLESFSILAQAWKCEECHVQFEDPDDLVKHQTEQHGPVSKKPTETEESSKFQFRCEDCRRTFVTLKQLSTHRDLHHTIKDQNLTQKDDTESAVPVRVPTPPPPLPMCVHCRKVCKDESTLTSHLRLHSADRKYPCKFCDFRFTTIEKRKNHAVIHTGDMKYVCFVCEYRCSSENRLKYHKQSQKHLDLKEALLNGPPYEPQAPIIQPARPPEVKKKRHSSERKRSDSSDVPSKCDICGEDFPNEKTMLKHKDTHPFIVFPNEDEPTRIFFK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -