Basic Information

Insect: Nematopogon swammerdamellus
Gene Symbol: -
Assembly: GCA_946902865.1
Location: CAMPPV010000338.1:67033-86520[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.0057 0.43 12.0 0.7 1 23 218 241 218 241 0.97

2 13 0.47 35 6.0 4.4 1 23 342 364 342 364 0.96

3 13 0.12 9.1 7.8 0.4 1 23 371 394 371 394 0.96

4 13 0.78 59 5.3 1.3 1 23 398 420 398 420 0.96

5 13 0.0068 0.51 11.8 0.3 1 23 425 448 425 448 0.96

6 13 0.84 64 5.2 5.4 1 23 455 478 455 478 0.88

7 13 0.084 6.4 8.3 0.1 2 20 490 508 490 510 0.93

8 13 7.7e-05 0.0058 17.9 0.7 3 23 525 546 525 546 0.95

9 13 1.6 1.3e+02 4.3 0.7 3 23 565 586 563 586 0.67

10 13 0.0084 0.63 11.5 2.1 1 23 599 621 599 621 0.95

11 13 0.00056 0.042 15.2 0.2 2 23 628 650 627 650 0.95

12 13 2.2e-06 0.00017 22.8 0.5 1 23 656 678 656 678 0.98

13 13 1.7e-06 0.00013 23.1 0.2 1 23 684 707 684 707 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.0057	0.43	12.0	0.7	1	23	218	241	218	241	0.97
2	13	0.47	35	6.0	4.4	1	23	342	364	342	364	0.96
3	13	0.12	9.1	7.8	0.4	1	23	371	394	371	394	0.96
4	13	0.78	59	5.3	1.3	1	23	398	420	398	420	0.96
5	13	0.0068	0.51	11.8	0.3	1	23	425	448	425	448	0.96
6	13	0.84	64	5.2	5.4	1	23	455	478	455	478	0.88
7	13	0.084	6.4	8.3	0.1	2	20	490	508	490	510	0.93
8	13	7.7e-05	0.0058	17.9	0.7	3	23	525	546	525	546	0.95
9	13	1.6	1.3e+02	4.3	0.7	3	23	565	586	563	586	0.67
10	13	0.0084	0.63	11.5	2.1	1	23	599	621	599	621	0.95
11	13	0.00056	0.042	15.2	0.2	2	23	628	650	627	650	0.95
12	13	2.2e-06	0.00017	22.8	0.5	1	23	656	678	656	678	0.98
13	13	1.7e-06	0.00013	23.1	0.2	1	23	684	707	684	707	0.97

Sequence Information

Coding Sequence: ATGTGGGACGTGCGAGTGTGCGTCGCGTGCCTCGCTACCGATGGGAGGATGTACAGCATGAGCGCCAGCAGACTGCTGCAGCCCTACCAACTGCTCGCCGGCGTCCAGCTTGATAATAACAATGATTACTTGCCAAAGAAGTTGTGCTGGGAGTGTGCGGCGCTCGTGAACAAGTTCAACTTGTTCAGACACAAGTGTGAGAGAGCCTATCTACTGCTGCGGGACATCTACAACCAACATGATGAGATAATAGAACGGTATGTGAAAGAGATAGACAGAGAGCGACATCACCTGACCTCTTCATACAGCGTCGCTCACATCTCAAACTACACACTGAAGAGTCGAAACGTCAAAATCACGAAGGACACAAAGAGAGAGCCCGCAGGCGCTCCTCCCGTCAAACATGAATTCGAAGTTCAAATAGTGAAAGCGGAGATCAATCTTGTCAAATGTGAACCGGACTTACACTTCAACGAGCCGTCTACCAACTCAGATTGCAATGAAGAAGTAGATAGTGATTCGAAGAATCTACAAGAGCTTGCTGAAGAGGGAAGTCCACTCGGAAAACTGAACGTTGAGAAGGAAGGAGTGAAAGAGGTTTCTCTACAGCAGCCAGGATGGACAGAAATTCCTTTGACTAAGGGTCAGAGGTACGAATGTGATATCTGCAAGCTGAGATCCAACACTCTCAGGAACATCAGGCGGCACATCAGCTCTCAGCACACAGCGCAGTACACCTGCAACATATGTCATGCTAATCACTTCTCCCGGTACACAGCGCTGCGCCACCTTAAGCAACACCAGAAGCAACAAGGACTTGTATTGAAGACACGAAAGGCAAAGTCAAAGCTAGACAAGAAAGGGGGAAATTTGTTGAAGCCACGACGGAGGAAGAAAAAACAGAAAGTCAAGGACACATTGAAGCCGGACGATTTAGGATTTGTGGAGCGCCCGCAGACGCAGGAGCAAATGATGGAAGTGGTGCGTGAGAGACAACTAGCCAAGGGCTACAACACGGCTCCGTTTAAATGTCATCTCTGCTTCAAGGTCTTCCTTGAAAACAGAACTTATAGCCAACACATGACTCTGCACGATCCCGCGCGCGGCGAGTTCGAATGCGACGTCTGCAAGATTCGCCTGCGCACGCGCCTGATGGTGTGGAAACACATCACACGCAACCACCTGCGAAGATACACCTGCAACATTTGCCCCAACGTATCCTGCAACCGGCTAGTGGCGCAAAACCACTATCAAACACATAAGGGTGTTAGATTCATCTGCCACGTTTGCGCGGCGACGTTCAGCAGGGAAGCGGCGATGCAAGTGCACGTGCTCAAGAAGCATCCTTCCTTCACGACGAGCCACGTGTGCGGAAAGTGTGGCACCTCCTTCCCCTCATCCAACGGACTCTTCTGTCACAAGCACAAGATGCATCAGGTCGCCACTGTGCCGGAGGAGAATGCGCCTTATTGTGAGGAGTGCAAGGTGCAGTTCGCTACGAGGAAGGCCTGGACTAAACACGTCCTCGATTCCGAGAGACATAAGGACTTACAGAAGGAAATTGTCAACGGTTGCGTACAATGCGGCGAGACGTTCGACACCAACTCGGCGCTGCGGAGACACAGGAAAGAACAACACACAGACAAGAATCTCGCCAAGAAAGTCGCAATCTCACGCAGGAAGCCTCAGCCTTGTGCTCTGTGCGGCGAGCGGATGACGAGCTCGCAGGGCCGGTGGGCGCACCACCGCCGCCGGCACCCCGGGCAGCCGTACCTCCGCCTCACGCCGGCGAGGTACGACTGCGAGCAGTGCGGCAAACACTTCAATACCAAGACAATACTGGATCAACACAGAGTGACGCATTCGGGTCCGCCGCCGCTGCAGTGCAGCCTGTGTCCGAGAGCGTTCTACATGCAGACGGCGCTGAAGCAACATATCTCTATCACGCACTCGGAAGAGAGGCCGTACAAGTGTGATGATTGTGACATGTCGTTCAAAGTGAAGGCGGCACTGAAGAGACATTTATACGTACACACTGGTGAAAGGCCTTACGCGTGCACAGAATGCGAAAAAGCCTTCACGACGCGAGAATGGCTGCAACTACATATACGCAAGGTGCATAACAAGGAACACATCCCGACCAAGCCTCGCATCAGGAAGAGGAAGCCGCCGGTGTAG
Protein Sequence: MWDVRVCVACLATDGRMYSMSASRLLQPYQLLAGVQLDNNNDYLPKKLCWECAALVNKFNLFRHKCERAYLLLRDIYNQHDEIIERYVKEIDRERHHLTSSYSVAHISNYTLKSRNVKITKDTKREPAGAPPVKHEFEVQIVKAEINLVKCEPDLHFNEPSTNSDCNEEVDSDSKNLQELAEEGSPLGKLNVEKEGVKEVSLQQPGWTEIPLTKGQRYECDICKLRSNTLRNIRRHISSQHTAQYTCNICHANHFSRYTALRHLKQHQKQQGLVLKTRKAKSKLDKKGGNLLKPRRRKKKQKVKDTLKPDDLGFVERPQTQEQMMEVVRERQLAKGYNTAPFKCHLCFKVFLENRTYSQHMTLHDPARGEFECDVCKIRLRTRLMVWKHITRNHLRRYTCNICPNVSCNRLVAQNHYQTHKGVRFICHVCAATFSREAAMQVHVLKKHPSFTTSHVCGKCGTSFPSSNGLFCHKHKMHQVATVPEENAPYCEECKVQFATRKAWTKHVLDSERHKDLQKEIVNGCVQCGETFDTNSALRRHRKEQHTDKNLAKKVAISRRKPQPCALCGERMTSSQGRWAHHRRRHPGQPYLRLTPARYDCEQCGKHFNTKTILDQHRVTHSGPPPLQCSLCPRAFYMQTALKQHISITHSEERPYKCDDCDMSFKVKAALKRHLYVHTGERPYACTECEKAFTTREWLQLHIRKVHNKEHIPTKPRIRKRKPPV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -