Nswa023155.1
Basic Information
- Insect
- Nematopogon swammerdamellus
- Gene Symbol
- -
- Assembly
- GCA_946902865.1
- Location
- CAMPPV010000919.1:62891-74041[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.00087 0.066 14.6 7.5 1 23 85 108 85 108 0.98 2 13 0.0013 0.098 14.0 1.2 1 23 163 186 163 186 0.95 3 13 2.7e-05 0.002 19.3 5.6 1 23 193 216 193 216 0.96 4 13 1.1 85 4.8 7.2 1 23 223 252 223 252 0.90 5 13 1.8 1.4e+02 4.1 0.2 1 11 259 269 259 281 0.87 6 13 0.00022 0.017 16.4 7.9 1 23 290 313 290 313 0.95 7 13 1.1 85 4.8 7.2 1 23 320 349 320 349 0.90 8 13 1.1 85 4.8 7.2 1 23 356 385 356 385 0.90 9 13 2.1 1.6e+02 3.9 0.1 1 11 392 402 392 406 0.90 10 13 6.4e-05 0.0048 18.2 3.0 2 23 511 533 510 533 0.95 11 13 6.4e-05 0.0048 18.2 3.0 2 23 548 570 547 570 0.95 12 13 6.4e-05 0.0048 18.2 3.0 2 23 616 638 615 638 0.95 13 13 0.00013 0.01 17.2 0.8 2 23 644 666 643 666 0.95
Sequence Information
- Coding Sequence
- ATGGAGGGTGTGAAAGTGGAGCAAGCGGGGGCGGCGCCGGAGTCGTTCTACACTCCGCTCTACCCGCCGCCGCCGCCACCGCCCGCGCCCCTCGCCGTCCCAACACCGCCCGACTACGCGCACAGATTTCAGCCTAAACACTATCTCAAGCTGGAGTGCTCGATGGAGCAGATGGACCCGCTCAGCATAATGGAGATCGGCCGCCGGCCGGTGTTGATCCGACGCGGCGGCCCCCCGAGCGACGAGAAGCGCTACAAGTGCGCGTTCTGCGCGTCCTGCTTCAAGCGCAACGACCATCTCAAGCGACACACGCGTACGCAACACTCGGACACGCTCTCCGGTCGCCATTTGCGATCGGTCGCGTACGACGACCCGTTGAAGTGCAACGAGTGGAGGCGGGCCGTGATTGATGCAAAGTGCGCCGATCCGCAGGGGCGCGAGGCGTGGCGCGCGAAGCGCATCAGCGCGGCCAACGACGAGCGCACATTCAAGTGTCCGCAGTGCGACTCGTGGTACAAGAGGAACGACCACCTCAAGCGGCACGTCGCCTCCGCTCACTCGGACTCACCTCAGATGCACTACTGCCCCACGTGCGACAAGAACTTCAAGCGACGCGACCACATGATGCGGCACATGGACATGAAGCACACACCGGAGACTCAGCGCTTCCGCTGTGCCGACTGCCACCAGGACTTCACCGGCCTAGAGAACTTCAAGCGACGCGACCACATGATGCGGCACATGGACATGAAGCACACACCGGAGACTCAGCGCTTCCGCTGTGCCGACTGCCACCAGGACTTCACCGGCCTAGAGAGGTTCACTTCACGTTCTAACCAACAACGCGCGCCGGCCGGCCGGCCGGTGCACTGCTGCCCCACGTGCGACAAGAACTTCAAGCGACGCGACCACATGATGCGGCACATGGACATGAAGCACACTCCGGAGACTCAGCGCTTCCGCTGCGCCGACTGCCACCAGGACTTCACCGGCCTAGAGAACTTCAAGCGACGCGACCACATGATGCGGCACATGGACATGAAGCACACACCGGAGACTCAGCGCTTCCGCTGTGCCGACTGCCACCAGGACTTCACCGGCCTAGAGAACTTCAAGCGACGCGACCACATGATGCGGCACATGGACATGAAGCACACACCGGAGACTCAGCGCTTCCGCTGCGCCGACTGCCACCAGGACTTCACCGGCCTAGAGGCAGTGCTGCTGCGGGCGAGCGGTGGCGGCGGCGGCGTCGAAGTCGAGCGCGGCGGCGGCCGGCCGTCGCTGCAGAGCCTGCTCTCCATCACGCGCGTCGCATCCCGGGTGGTCTGCAACCGCTGCTGTCGCCTGGATTGTCGAGCTGGTGAAGTACCGAGGACGCCGAGCGGCGGCGGTGGTGGTGCCGGCACGGTGCCTCCAACCGTGCGGGTCGCTGCGCCGCTGGAGAAGGGTCCGCACGTGGCGGAAGCTCAGTTTAATCTGGTGGCGCACGAGCAGATGCAGCACGGGCTGACGCCGACGCCGCGGCTGCCGTGCCCGCACTGCGACGTCACGTTCAAGCGGCGCGACCACATGCTGCGCCACGTCAACAGCAAGCACCTCAACCAGATGCAGCACGGGCTGACGCCGACGCCGCGGCTGCCGTGCCCGCACTGCGACGTCACGTTCAAGCGGCGCGACCACATGCTGCGCCACGTCAACAGCAAGCACCTCAACCAGATGCAGCACGGGCTGACGCCGACGCCGCGGCTGCCGTGCCCGCCGTGCCCGCACTGCGACGTCACCACAGTCTGCCCGGTGGCGCACGAGCAGATGCAGCACGGGCTGACGCCGACGCCGCGGCTGCCGTGCCCGCACTGCGACGTCACGTTCAAGCGGCGCGACCACATGCTGCGCCACGTCAACAGCAAGCACCTCAACCAGGTGGTGAGCTGCCCGCTCTGCCCGTCGGTATACAAGCGTCGGGACCACCTCGTGCGACATCTGCGCGAGAAGCACAAAACCGGGTTGGCGCCCTCGCAGCCCCCGCACTCTACTCTCAACTGCGCCTCATAG
- Protein Sequence
- MEGVKVEQAGAAPESFYTPLYPPPPPPPAPLAVPTPPDYAHRFQPKHYLKLECSMEQMDPLSIMEIGRRPVLIRRGGPPSDEKRYKCAFCASCFKRNDHLKRHTRTQHSDTLSGRHLRSVAYDDPLKCNEWRRAVIDAKCADPQGREAWRAKRISAANDERTFKCPQCDSWYKRNDHLKRHVASAHSDSPQMHYCPTCDKNFKRRDHMMRHMDMKHTPETQRFRCADCHQDFTGLENFKRRDHMMRHMDMKHTPETQRFRCADCHQDFTGLERFTSRSNQQRAPAGRPVHCCPTCDKNFKRRDHMMRHMDMKHTPETQRFRCADCHQDFTGLENFKRRDHMMRHMDMKHTPETQRFRCADCHQDFTGLENFKRRDHMMRHMDMKHTPETQRFRCADCHQDFTGLEAVLLRASGGGGGVEVERGGGRPSLQSLLSITRVASRVVCNRCCRLDCRAGEVPRTPSGGGGGAGTVPPTVRVAAPLEKGPHVAEAQFNLVAHEQMQHGLTPTPRLPCPHCDVTFKRRDHMLRHVNSKHLNQMQHGLTPTPRLPCPHCDVTFKRRDHMLRHVNSKHLNQMQHGLTPTPRLPCPPCPHCDVTTVCPVAHEQMQHGLTPTPRLPCPHCDVTFKRRDHMLRHVNSKHLNQVVSCPLCPSVYKRRDHLVRHLREKHKTGLAPSQPPHSTLNCAS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -