Nswa026442.1
Basic Information
- Insect
- Nematopogon swammerdamellus
- Gene Symbol
- -
- Assembly
- GCA_946902865.1
- Location
- CAMPPV010001151.1:56381-69972[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 1 76 4.9 0.9 1 23 92 114 92 114 0.96 2 10 0.053 4 9.0 0.1 1 12 121 132 121 134 0.92 3 10 5.3 4e+02 2.7 0.2 1 13 147 159 147 164 0.85 4 10 0.00011 0.0086 17.4 3.1 3 23 176 197 176 197 0.98 5 10 3.5e-05 0.0027 19.0 0.2 1 23 206 229 206 229 0.96 6 10 0.00011 0.0085 17.4 0.7 1 23 234 256 234 256 0.93 7 10 0.46 35 6.0 0.7 6 22 267 283 263 287 0.84 8 10 9.9e-06 0.00075 20.7 3.2 1 23 292 315 292 315 0.98 9 10 0.00018 0.014 16.7 0.6 1 23 321 343 321 343 0.96 10 10 8e-05 0.006 17.9 1.2 2 22 353 373 353 373 0.95
Sequence Information
- Coding Sequence
- ATGCGGCGTTATCATGACGGAGAGAAGGCGCTTCATGGTCTCGTATCGACTGAGCGCTCCAAACCCTCGAACATCGGAGCACGCGGCAGCCACGCTCAGTCGATACCCGTCGGAGCGCGCGCCGTGGAGCGCTTGAACATGGAGCGCGGCGCTCCATCCGTTGTCGATTGTGAATATAAGGAGCCTCACTTCAAGAAGATAGTTCTGAGTGTAGAAGAGCAGAAGGCGGAATTGGAGGCGCAGAGGAAGGAGGCCAAGTACTTGCAAGCGGACTTCAAGTGTTACAACTGCGCGCTCGGATTCCTGCTGAAGGATTCATACCAAAGCCATATGGTGCGCCACGAAGAGTCGAACGGGCAATACTCGTGCCACATCTGCGGGCTACGCTTCGCTCGTGTGGGCGTGCGCGGGATGCACGCGGCGCTGCATTCCGAGCGGCATCGGTGCTCGCGCTGCGGGCTGCACGTGCGGAGGGCGCGGCGGAGGCAGCACGCGGCGCGCTGCCGCCGGAGCGAGGGCGCCGGCTGCCATCAGTGCGGAAAGATCTTCAAAGACACAGAGAGGCTGCAGCAGCACCTAAGGCGGATGCACGCGGCGCGCAACAGCAACAAGACTTACACTTGCGTCGTGTGCAGCAAGGTGTACCGAGACGCCTCGGCACTCCGCGTTCACACCATaagtaAGCACGGCAACCGCCGCTTCCACTGTCAGCGCTGCCCGACCTCCTTCAACAATCCGTACGCGCTGAACCGCCACGCCGCCGCGCACCGCGACAATCAGCAGACGTATTGTGCACCGTGCAACGCTTGGTTCAAGTCCCAGAAGACCTACAGGGCTCACATGCGGACTGCCTCGTGCCATCGCTCGGACAGCTACGAATGTTCCATCTGCGGCCGCTCCTGCGTCTCTAAACACTCTCTCGAAAACCACGTGCAAACTAAACACTCGCAGGACGCCAGCCACGCGTGCCTGGTGTGTCCAGCGCGATTCGCGTCGCGCAAGTCCCTGCTGAGACACGCGCGAACGCATTCGGATCGACCGGCTGCTGAAATGGCCGTGTGCCATGCGTGCGGAAAGAGTTTTAAGGGTCAAAATAAATTAACAAGACATCTGAAGACTGTGTGTGAGCTGAAGAATCCGAACGAAGATGCCAACTAA
- Protein Sequence
- MRRYHDGEKALHGLVSTERSKPSNIGARGSHAQSIPVGARAVERLNMERGAPSVVDCEYKEPHFKKIVLSVEEQKAELEAQRKEAKYLQADFKCYNCALGFLLKDSYQSHMVRHEESNGQYSCHICGLRFARVGVRGMHAALHSERHRCSRCGLHVRRARRRQHAARCRRSEGAGCHQCGKIFKDTERLQQHLRRMHAARNSNKTYTCVVCSKVYRDASALRVHTISKHGNRRFHCQRCPTSFNNPYALNRHAAAHRDNQQTYCAPCNAWFKSQKTYRAHMRTASCHRSDSYECSICGRSCVSKHSLENHVQTKHSQDASHACLVCPARFASRKSLLRHARTHSDRPAAEMAVCHACGKSFKGQNKLTRHLKTVCELKNPNEDAN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -