Nswa015650.1
Basic Information
- Insect
- Nematopogon swammerdamellus
- Gene Symbol
- Znf574
- Assembly
- GCA_946902865.1
- Location
- CAMPPV010000511.1:150905-180984[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.096 7.3 8.2 0.4 1 23 429 452 429 452 0.94 2 12 0.0022 0.17 13.3 2.0 1 23 459 481 459 481 0.99 3 12 0.04 3 9.4 0.1 1 23 485 508 485 508 0.97 4 12 0.61 46 5.6 0.8 1 13 514 526 514 527 0.92 5 12 0.00095 0.072 14.5 2.5 1 23 578 601 578 601 0.95 6 12 8.9e-05 0.0067 17.7 1.3 2 23 606 627 605 627 0.98 7 12 0.00012 0.0088 17.3 0.9 1 23 633 656 633 656 0.97 8 12 0.44 33 6.1 0.8 2 22 665 685 664 689 0.90 9 12 0.0013 0.099 14.0 0.7 1 19 697 715 697 720 0.89 10 12 0.00048 0.037 15.4 2.6 1 23 723 746 723 746 0.96 11 12 1.5e-05 0.0012 20.1 3.0 1 23 755 777 755 777 0.97 12 12 8.9e-05 0.0067 17.7 1.4 1 23 783 806 783 806 0.96
Sequence Information
- Coding Sequence
- ATGCGCGGGGCGGATCTCGGCGTGTCGCCGCCGCAGCGATATAGTTTTGCGTGCGGCGACGTGAAACCAGCGACGGCGCCGTGTCCGATGTGCCTGACGCACGGCCGCACCATGTCGCCGCTGCAGCACACCTCCAGCGCTTACAACATGCTCGTCGCTGGACTGCACACTAATGTTAGTGTAAACAACAACAACAATAATGTTTCAGATATAGTTTTCCATGCGGCGGGTAGGATGGGCGACGTGAAACCAGCGACGGCGCCGTGTCCGATGTGCCTGACGCACGGCCGCACCATGTCGCCGCTGCAGCACACCTCCAGCGCTTACAACATGCTCGTCGCTGGACTGCACACTAATGTTAGTGTAAACAACAACAACAATAATGTTTCAGATATAGTTTTGCATGCGGCGAGTAGGAAGGGCGACGTGAAACCAGCGACGGCGCCGTGTCCGATGTGCCTGACGCACGGCCGCACCATGTCGCCGCTGCAGCACACCTCCAGCGCTTACAACATGCTCGTCACTGGACTGCACACTATGATGGGCGACGTGAAACCAGCGACGGCGCCGTGTCCGATGTGCCTGACGCACGGCCGCGCCATGTCGCCGCTGCAGCACACCTCCAGCGCTTACAACATGCTCGTCGCTGGGCTGCACACTAATGAGCAGATTGAGCAGTTTGTGACATACTCGCTGGTGTGCTGGGAGTGCCTCGGCTTCCTGAAGAAGATGCTCAAGTTTCAGAATCAAGTTTTGCACGCCAACATCATGCTGCAGTCTTACACTGACAATATGAAGAACATGTCATACTCGTTCCTGGGTCAGGTGAGCAAGATCGGCTTTGACTACGACCTGCATCACGACCCGCTTGACCACGACCCGGACGACATGGGCTGGGACGTTGCCGTCTCCTCCGACCCAACCCTCGCGGAGGTGAAGATCGAGCTCGAAGCGAGTCGGGCCGTTGAAGAGCTGAGTCAGGCCGACCCGTCCGCTGCGGTCAAGACCGAACGTGCCGCTAAGAAGAGAACCGCCAAGAGGAAGAAGAAAGAGCAGGCGCAGGGGAAGTCGGCGGCTTCACATCAAGGACTCTACACACCGAACACGCCGACCCTTGTCGGCGGCTCGAAATCATCAACAACTTCAAGCGGCGGGTGGCCGAGTGGTTTGGGCATCGGCTTCTCGTGCGAGAGGTCCGCGGTCGGTACGGTTACGCTGAGCGAGTCGGAGATGTGCCGCTACCGGGAGGAGGACCGCGAGAGCGAGCAGTACACGAAGGCCACGTACAAATGCGAGAGCTGCATCAAGGGGTTCATATTTGCTGATCTCCTCGAGAGGCACAATTTGAGCAAGCACGCGTTGGAAACAAATCCATACCAATGCGACATCTGTCGAGAGTGCTTCGGCAGCGAGGACCTGGCGTCGAAGCACCGGCGGAAACACTACTCGCTGTACCGCTGCGCCGAGTGCGGCTACACCGGCCGGCTGCTCGCGGACGTCGAGCGGCACTACTCTACGCAGCACGAGCCGGAGAGATTCTTCACATGCGACGAGTGTCAGCTCAAGTTCACCACGAGCCGGAGAGATTCTTCACATGCGACGAGTGTCAGCTCAAGTTCACGTGAGTCGGTAACACTACTCGCTGTACCGCTGCGCTGGTGCGGCTACACCGGCCGGCTGCTCGCGGACGTCGAGCGGCACTACTCTACGCAGCACGAGCCGGAGAGATTCTTCACTTGCGACGAGTGCCAGCTCAAGTTCACGACGAAGAGGAAGCTTCGGTATCACAAGGAATCGGCGCACAAGGAGGCGGTCAAGTGTGAACTGTGCGGCAAGGTCATGATCAACCGATACTCGCTCAAACACCACATGCTAACACACACCGGTATGCCGACGTTCGAATGCAACATCTGCCACAAGGTGTACCGGGGCGAGGCGGGACTCTACTCGCACATGCGACTCTTCCACTCCACGGAGAGCGCCACGGACACATACTGCGCCGAGTGCGACATACAGTTCAAGAACAAGACCATCTACAGGTCGCATCTCAAGCGCAGCCCGCGCCACGCCACGCCGGAGCAGCTCAAATTTCCCTGTGCGAAATGTCCGAAGAGATTTATCAGTGAGGCGTCGCTGCGGAAACACGACAGATACTACCACCTCGATTACACCTGTCACATATGTCAAAAGCGCCTCAAGAACTGGTTCTCGCTGGACAACCACATCAAGTTCGTGCACGAGGGGCGCGAGATGCCGAGGAAACACATGTGCGAGACCTGCGGGAAAGGATTCAAGACAAAAACGATGCTCAACAACCACCTGACGACGCACACGGGCGAGCGGCCTCACTCGTGCGACATCTGCGGCGCCGCGTTCTCGGTGAAGGCGTCGCTGCGCACGCACCGGCGCCACGTACACTTCAAGCTGGCCAAGCAGGCGCCGCCGGCCGCCACGCAGCTCTACCATTTCTGA
- Protein Sequence
- MRGADLGVSPPQRYSFACGDVKPATAPCPMCLTHGRTMSPLQHTSSAYNMLVAGLHTNVSVNNNNNNVSDIVFHAAGRMGDVKPATAPCPMCLTHGRTMSPLQHTSSAYNMLVAGLHTNVSVNNNNNNVSDIVLHAASRKGDVKPATAPCPMCLTHGRTMSPLQHTSSAYNMLVTGLHTMMGDVKPATAPCPMCLTHGRAMSPLQHTSSAYNMLVAGLHTNEQIEQFVTYSLVCWECLGFLKKMLKFQNQVLHANIMLQSYTDNMKNMSYSFLGQVSKIGFDYDLHHDPLDHDPDDMGWDVAVSSDPTLAEVKIELEASRAVEELSQADPSAAVKTERAAKKRTAKRKKKEQAQGKSAASHQGLYTPNTPTLVGGSKSSTTSSGGWPSGLGIGFSCERSAVGTVTLSESEMCRYREEDRESEQYTKATYKCESCIKGFIFADLLERHNLSKHALETNPYQCDICRECFGSEDLASKHRRKHYSLYRCAECGYTGRLLADVERHYSTQHEPERFFTCDECQLKFTTSRRDSSHATSVSSSSRESVTLLAVPLRWCGYTGRLLADVERHYSTQHEPERFFTCDECQLKFTTKRKLRYHKESAHKEAVKCELCGKVMINRYSLKHHMLTHTGMPTFECNICHKVYRGEAGLYSHMRLFHSTESATDTYCAECDIQFKNKTIYRSHLKRSPRHATPEQLKFPCAKCPKRFISEASLRKHDRYYHLDYTCHICQKRLKNWFSLDNHIKFVHEGREMPRKHMCETCGKGFKTKTMLNNHLTTHTGERPHSCDICGAAFSVKASLRTHRRHVHFKLAKQAPPAATQLYHF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -