Nswa003917.1
Basic Information
- Insect
- Nematopogon swammerdamellus
- Gene Symbol
- -
- Assembly
- GCA_946902865.1
- Location
- CAMPPV010000111.1:427091-439769[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.097 7.4 8.1 4.2 1 23 266 288 266 288 0.97 2 13 0.015 1.1 10.7 3.2 1 23 295 318 295 318 0.95 3 13 3 2.3e+02 3.5 0.6 1 23 322 344 322 344 0.96 4 13 3 2.3e+02 3.4 0.5 1 15 349 363 349 372 0.68 5 13 0.012 0.91 11.0 0.5 1 23 376 399 376 399 0.93 6 13 1.6 1.2e+02 4.3 0.0 3 23 414 435 413 435 0.89 7 13 0.001 0.077 14.4 2.2 3 23 445 466 445 466 0.97 8 13 0.07 5.3 8.6 0.4 2 23 484 506 484 506 0.96 9 13 2.8e-05 0.0021 19.3 1.1 1 23 517 539 517 539 0.98 10 13 0.0023 0.17 13.3 0.1 1 23 545 567 545 567 0.94 11 13 0.0001 0.0077 17.5 1.9 1 22 573 594 573 597 0.90 12 13 2.9e-05 0.0022 19.2 2.8 1 23 607 629 607 629 0.96 13 13 7.7e-05 0.0059 17.9 0.2 1 23 635 658 635 658 0.97
Sequence Information
- Coding Sequence
- ATGTCGCTGGGTGCGTGTGTGGCCTGCCTGGCACCGGACATGAAAACATTCAGTCTACACAAACACGATTTGAAGCGAAAATATGAAACGGTTTCTGGACTGCTGGTAGGTGACGAAATGCCTCAGAATTTGTGCTGGGAGTGTGCGGCACTTGTGAACAAGTTCAACTTGTTCAGACACAAGTGTGAGAGAGCCTATCTACTGCTGCAGGACATCTACAACCAACATGATGAGGTATGTGTACTGGACCTGCCTCAGAAGTTGTGCTGGGAGTGTGCGGCACTCGTGAACAAGTTCAACTTGTTCAGACACAAGTGTGAGAGAGCCTATCGGCATGACAACATTAAAGAAACGGATCGCACGCATACAGAACTGACATCTCCTTACTCAATAAGTGCAGTCACAGCCCATCACTACAACCCGGTCGATGACAAATCAGAGAGCATCTCCCACTTTATAGGATGCGATCAAGAAAGCGGCAATTTTGTGGACCTGAATATAGTCAAGAGAGAAGAAATTGAGACAGTGGACGAAGCGGTCCCCGATTTCGTTGATGAATCCGTGTCGCACGTTGGGAATAAAAAGAACAGGAAGTCGAAAAGACGAAAGGCAAAAGAAATAAAACGCAAAGACAACAGCGAGCGTTGCAAAAAGAAGTGTGCGCCAACGAAACGCTCACTTATATCCGCGAGGAAATCCTGCGAGAGTTTTGCAACAGTCGTATCCGTGTCGCACGCGGAACAGATGCAGGAAATACAGAGGCGGAAAGATACGCCGTCTTATAAGCAGTCGCGCCACAAGTGTACGCTATGCCACAAGGGTTTTATGGAGGAAAGGGCGTATGAAAATCACACTCTGAAACATCAAGCAGTCAGCGGCGACTTTGAATGCGACGTGTGCAAGATCCGCTTTCGGCTGAAGCGTCACGTGCGGAGCCACATCTGCGCGGTGCACGCGACCAAGTACGTCTGCAGGGCGTGCGGGCACGTCAGCGCCGGCCTGGATCAGGCGACCAATCATCACAAGTGGCACGCGGGGGTCACCTACAAGTGCGCCGTCTGCGGCGAAGTCTCCAATAAAGTGACAACGCACCTGAGTCACGTGCGACTGAAGCACCCGTCGCGACACATCTGCGTCGCTTGCGGGCGCTCGTTCGTCAGCGACAAGGGACTCACTATGCACACCAGGCTCATGCACAAGGATGGCAACACTGAGGCGGGCGGAGGTGAGGAGCGCGAGTGCGCCGCGTGCTCGGTTCGCTTCGCGTCGCTTGCCGCGTGGAAACAGCACATGGTATTGTCGCATCGTGACAACGCCGAGTTTGGGAACGGTTGCCGGCACTGCGGCGAGACGTTCGCCAGCCGGGAGGAGTACCGCGAGCACTACCGCCAGCGGCACAAGCGACAGCGGCACAAGCGGTACGCGAGCAAGACCTGGGAGCAGCCGCGACAGTGCGAGCACTGCGAGGAGCCCGTGCGGAGCGCGCTGCAGTACTACTGGCACATCCGGCAGTCGCACCCCGGCCTCCGCTACCCCAGCGACAACAAGTTCGTGTGCGAGCTGTGCGGCCGCGACTTCAAGTTCAACGCGTCGCTCACATACCACCGTCGCTCTCACAACGGCATACTGCCGCACGCGTGCGCGCTCTGCCCGCGCGCCTTCCCGACGCGCGCGCAGCTGGACAAGCACGCGATCGTGCACAGCGAGCGGCGGCCGCACGCCTGCCACCTGTGCCCCAAGGCCTTCAAGGAGAAGTCGGCTCTCAGCAGACACGTGCGGCTGGACAAGCACGCGAGCGTGCACAGCGAGCGGCGGCCGCACGCCTGCCACCTGTGCCCCAAGGCCTTCAAGGAGAAGTCGGCTCTCAGCAGACACGTGCGGTACCACAGCGGCGCGCGACCGTACCCGTGCGAGACGTGCGGCAAGGCGTTCACGGAGGCGAGCAGCCGCAAGCTGCACGTGCGGAGCGTGCACCTCAGGCTGCCCGCGCGGCCCGCGCGCCGCGCCGCGCCCGCGTCCGCTCACCCCGTCTAA
- Protein Sequence
- MSLGACVACLAPDMKTFSLHKHDLKRKYETVSGLLVGDEMPQNLCWECAALVNKFNLFRHKCERAYLLLQDIYNQHDEVCVLDLPQKLCWECAALVNKFNLFRHKCERAYRHDNIKETDRTHTELTSPYSISAVTAHHYNPVDDKSESISHFIGCDQESGNFVDLNIVKREEIETVDEAVPDFVDESVSHVGNKKNRKSKRRKAKEIKRKDNSERCKKKCAPTKRSLISARKSCESFATVVSVSHAEQMQEIQRRKDTPSYKQSRHKCTLCHKGFMEERAYENHTLKHQAVSGDFECDVCKIRFRLKRHVRSHICAVHATKYVCRACGHVSAGLDQATNHHKWHAGVTYKCAVCGEVSNKVTTHLSHVRLKHPSRHICVACGRSFVSDKGLTMHTRLMHKDGNTEAGGGEERECAACSVRFASLAAWKQHMVLSHRDNAEFGNGCRHCGETFASREEYREHYRQRHKRQRHKRYASKTWEQPRQCEHCEEPVRSALQYYWHIRQSHPGLRYPSDNKFVCELCGRDFKFNASLTYHRRSHNGILPHACALCPRAFPTRAQLDKHAIVHSERRPHACHLCPKAFKEKSALSRHVRLDKHASVHSERRPHACHLCPKAFKEKSALSRHVRYHSGARPYPCETCGKAFTEASSRKLHVRSVHLRLPARPARRAAPASAHPV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -