Nswa002948.1
Basic Information
- Insect
- Nematopogon swammerdamellus
- Gene Symbol
- zfy1
- Assembly
- GCA_946902865.1
- Location
- CAMPPV010000079.1:264897-296792[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 5.9 4.5e+02 2.5 0.0 7 20 39 52 39 54 0.90 2 13 0.041 3.1 9.3 0.2 2 17 106 121 105 124 0.86 3 13 2.4 1.8e+02 3.8 0.3 1 23 139 164 139 164 0.85 4 13 0.0008 0.061 14.7 0.2 3 23 172 194 170 194 0.95 5 13 0.011 0.86 11.1 0.2 1 23 200 222 200 222 0.93 6 13 0.00071 0.054 14.9 3.3 1 23 228 250 228 250 0.98 7 13 0.014 1.1 10.8 0.2 1 23 436 458 436 458 0.97 8 13 2.3 1.7e+02 3.8 3.7 1 14 465 478 465 479 0.89 9 13 0.0016 0.12 13.7 2.2 1 23 561 584 561 584 0.95 10 13 0.00018 0.014 16.7 0.2 1 23 591 614 591 614 0.98 11 13 8.4e-05 0.0064 17.8 0.9 1 23 635 658 635 658 0.97 12 13 0.014 1 10.8 0.1 1 21 699 719 699 720 0.95 13 13 0.035 2.7 9.5 0.2 1 20 734 753 734 754 0.94
Sequence Information
- Coding Sequence
- ATGGCAGCCCCGGAGGCAGCTCCCCTCATCCTGTGCATGCTGAATGCCTGCGGCGAGGAAGTAGCCCTAAATATACATCCCGGGGATGACTTCCACACGTTTTTGCGTAAAGCTAACAAGAGTTTCGTGTCGAAGGAAACGTTGGCCGCCCACGAGGCCAGGAAATGCAAAAATCCCAAGATTCTGGTGACCAAGAAAATAAAAACCGTGCCCGTGAAGGTTCTAGGAAGCGCGCGAATTTCGGAAGACGATCATAATATTATTCAGAAACAGGACGGCAGGAAGAGGCCGAGACCGCTGAACCCGAAACTGATGACCTGCGACGACTGCGGAGCGAGTTTCACGTCGAAAGTCCGACTCAAGTTTCACATTCCGTTCCACAACGGCAGCGCGTACCTCAGCTCCGAGGGCCGGTACCTCTGCGAGCAGTGCCCGGCGGACGTCAGCTTCAGCACGGAGGCGGAGCTGTTCGACCACGTGCACTTCACGCACGGCAAGCGCAGGCGCTGGGCGTGCCCCGTCGACGGCTGCCAGAAGACATTCTTCATGAGGGCTATGCTGAAGAAGCATGGCCGCACGCACACCGACACCCGCCCCTACATCTGCAGCGAGTGCGGGAAACGATTTCTGGACAAGCAGACGCTGGACGAACACGGCGTCACACATCTGCAGACGAAGCCGTTCCAGTGCCACGTGTGCCAGAAGCAGCTGACGCGGCGCTCGCGGCTGCGCATGCACGTGCGCGCGCACGACGACATCCTCGCGCCGCGCGCGCTGCGCGTCTGCCGCGCCTGCTGCCGCGCCTTCGCGGACCTGCCGCGCGCGCAGGAGCACGCCTCGTCATCGGAGTGCGCGGCGAACGTGAAGAAGGAGCAGAATGCAAAGAGCAGCGCCGTCCAGCCGTCTCCGGAGACAGGCGGCGCCGGCGCCGCTCTGAACACCGAGAAGCAGAACTGCAGGCCGTCTGACAAACCAGTAGAGTCCGAAGAGCGTAGAATTATGCTGAATGGTATTCTCAGCCCTCGGGACAACGAGGAAGTCCAGGGGCTCGCGCGGGGCGGGAAGCGAGTGGGGGAGGGGCTATCGGCCGGTAAAGCGACAACGGGCCAACCCAACATGTGCATTGAAATACAACCGGGCATAATGACTGGCGCGAGATGCCGCGCGATGCGCGCAGGCGGTGGCGCGTGCGTCAAGTTCGCCCGCTCGCGGTCGAATAGTTTCGATGTGTTCCAATTCCGCATGACGGACGAAATGAGCGCAGAGACGAAACGGCTGATCGCGGTCGTGGAGACAGCGAAGGTGTTTCGCTGCGAATATTGCGAGGACGTGTTCTACATGGCGGCTAGCCTCAACAGCCATCGCCAGGCTCACGCCGGCGTGATGAACCCGTTCACCTGCCACATCTGCAAGGTCTGCTTCCCGACGTACTCCAGGACGCCCGCGCAGGAGGCGGCGCCGCGTGCAACGAGTTCAGCAGCTCGCGATCGACTGGTCTCAACTGGTCAACTTGGTCTCAACTCCATGGAGCCGTACCCGTTGCCCGAATGCACGACGCATAAGACAACGCACGGTTTCTACAAGAGAGTTGGCGACTCACAAGACCAGACTGAGGGCGGTGTCATACTGGAGACTGGCGGCGGAATCGTCGGTTACGGTGATTTTCCGGTCGCCAAGCACTTCCTCTGTCAGGACTGCGGGCGGTCGTACCTGCACTGGACTTATCTGCAAGTGCATCGTCGCATGAAGCACCCGACAGGCGAGTCTGTCTACACGTGCGCAGAATGCGGTCTCACCTTCCCTAACAGTTGGGGTTTGGCCTATCACAGAAAGAAGACGCACGGCCCCAACGCGGGCAACGAAGGACAGAAAGAAAATTCCAACAAGAATACTAACGCCAAATTTCCGTGCCGTGACTGCGGCGAGGTCTACTTCAACAGGAGCGCCCTCTACACGCACAGGCGTAAGACGCACACCGCCAGGATACGCCAAGTCGACAAGGGGCTCGGTGAGTATCGAACCGTGCGGCCGGCATGGCACCGTAGCTCCGACGGGCGCAGGAGCAACGTACGCTACGGCCCGCTTGCAGGGCTGTTCGCGTGCGCGTCCTGCAGCAAGTGCTACGCGAGCAAGCCCGGCCTGGAGGCGCACCTGCGCGGTCAGACGACGCGCGCGTGCCGCAGCGCGACGGCCGCGCCGTACGCGTGCGCGCGCTGCGGCGCCGCGTTCGCCTTCTGCGCACATCTCGCCAGGCACGTGCTGTGA
- Protein Sequence
- MAAPEAAPLILCMLNACGEEVALNIHPGDDFHTFLRKANKSFVSKETLAAHEARKCKNPKILVTKKIKTVPVKVLGSARISEDDHNIIQKQDGRKRPRPLNPKLMTCDDCGASFTSKVRLKFHIPFHNGSAYLSSEGRYLCEQCPADVSFSTEAELFDHVHFTHGKRRRWACPVDGCQKTFFMRAMLKKHGRTHTDTRPYICSECGKRFLDKQTLDEHGVTHLQTKPFQCHVCQKQLTRRSRLRMHVRAHDDILAPRALRVCRACCRAFADLPRAQEHASSSECAANVKKEQNAKSSAVQPSPETGGAGAALNTEKQNCRPSDKPVESEERRIMLNGILSPRDNEEVQGLARGGKRVGEGLSAGKATTGQPNMCIEIQPGIMTGARCRAMRAGGGACVKFARSRSNSFDVFQFRMTDEMSAETKRLIAVVETAKVFRCEYCEDVFYMAASLNSHRQAHAGVMNPFTCHICKVCFPTYSRTPAQEAAPRATSSAARDRLVSTGQLGLNSMEPYPLPECTTHKTTHGFYKRVGDSQDQTEGGVILETGGGIVGYGDFPVAKHFLCQDCGRSYLHWTYLQVHRRMKHPTGESVYTCAECGLTFPNSWGLAYHRKKTHGPNAGNEGQKENSNKNTNAKFPCRDCGEVYFNRSALYTHRRKTHTARIRQVDKGLGEYRTVRPAWHRSSDGRRSNVRYGPLAGLFACASCSKCYASKPGLEAHLRGQTTRACRSATAAPYACARCGAAFAFCAHLARHVL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -