Basic Information

Insect: Nematopogon swammerdamellus
Gene Symbol: -
Assembly: GCA_946902865.1
Location: CAMPPV010000315.1:255768-280525[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 1.3 99 4.6 2.1 1 23 280 303 280 303 0.94

2 14 1.3 99 4.6 2.1 1 23 335 358 335 358 0.94

3 14 0.24 18 6.9 1.9 1 23 492 515 492 515 0.97

4 14 0.43 33 6.1 0.6 1 23 684 706 684 706 0.98

5 14 0.0086 0.65 11.5 1.8 2 23 718 739 717 740 0.94

6 14 2.3e-05 0.0017 19.6 0.8 2 23 745 766 744 766 0.97

7 14 0.0002 0.015 16.6 0.1 2 21 776 795 775 796 0.95

8 14 0.00012 0.009 17.3 0.3 2 21 837 856 836 857 0.95

9 14 0.00025 0.019 16.3 0.2 2 23 866 887 865 887 0.98

10 14 0.0045 0.34 12.3 0.3 2 21 897 916 896 921 0.93

11 14 2.7e-05 0.0021 19.3 3.2 2 23 929 950 928 951 0.95

12 14 0.00023 0.018 16.4 1.0 1 23 957 980 957 980 0.95

13 14 0.00017 0.013 16.8 1.6 2 23 990 1010 989 1010 0.95

14 14 0.042 3.2 9.3 0.3 1 23 1016 1039 1016 1039 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	1.3	99	4.6	2.1	1	23	280	303	280	303	0.94
2	14	1.3	99	4.6	2.1	1	23	335	358	335	358	0.94
3	14	0.24	18	6.9	1.9	1	23	492	515	492	515	0.97
4	14	0.43	33	6.1	0.6	1	23	684	706	684	706	0.98
5	14	0.0086	0.65	11.5	1.8	2	23	718	739	717	740	0.94
6	14	2.3e-05	0.0017	19.6	0.8	2	23	745	766	744	766	0.97
7	14	0.0002	0.015	16.6	0.1	2	21	776	795	775	796	0.95
8	14	0.00012	0.009	17.3	0.3	2	21	837	856	836	857	0.95
9	14	0.00025	0.019	16.3	0.2	2	23	866	887	865	887	0.98
10	14	0.0045	0.34	12.3	0.3	2	21	897	916	896	921	0.93
11	14	2.7e-05	0.0021	19.3	3.2	2	23	929	950	928	951	0.95
12	14	0.00023	0.018	16.4	1.0	1	23	957	980	957	980	0.95
13	14	0.00017	0.013	16.8	1.6	2	23	990	1010	989	1010	0.95
14	14	0.042	3.2	9.3	0.3	1	23	1016	1039	1016	1039	0.96

Sequence Information

Coding Sequence: ATGCTCTGTTGGGAGTGCGAGGCGTTCCTGCGGAGGTGTCGCCGCTTCAGGCGACGCGCGGAGACGGCGCGCACGACACTGCGTCACTATCTCGCCGGCGGTAGCACGGGATACGATTTCATTATAGAGTCCGACCGCGACTGTTCGCGATCGCCGTCACTTACAAACGAAGAAATCACTTCAAAAATAAGTATAGAGTTGAGCCCGTGCGACGTGTACGACGAAATTCCGATAAAAAACGAACCGGATTTGGATTCGGACGCGGAATTCGCCGAGGACCCATTGAAGCCGACGCTGATGAGATTCGAACAGGATACTGAAACCACACCGCGACCCGTTAAGCCACGCATAATAACACAACAGGCTTTCAAGCAGAACAGGATACCTGTCGTTATCAAGGCTTCGTCGCAGGTCAATTTTGCGGAGCTGTCAAAAATATTGAAGGAGAAGAAGAATTCGTTGAATGAGAAACAAAATATTGTGCTGATAACTAAAGTGCCGGGTAAAAATCAAATATCAATCAATGCCGGCAAAATAACATCAGATGAAGATTCCAACACTACCGGCACAGTGCGTACACCGTCGGAGTCGACCTCCAGAACTGTCTCGACGCGTTCGGCGTCCGCGAGGAAGGGAGCTCCAGCGACACCGGCAAAAGTTCAAGTATCTCTGAGCGGCGTGTTGAAACCTCAGCCCAACACCGTGGCGGTGAACAAGAGAAGTGCGGCGGGGATATTGTCGCAGGACCAGGCCGTGCGGCCGATACAGATCAGCGAGGAGACTCTGCGGGAGCAGCTGGAGCTGCAGCGCGGCTCCCCGTTCTACGTCAACTCGCGCTTCAAGTGCGAGCTGTGCATCATGGGCTACTACACTCGGTGGCAGCTCCAAGAGCACCAGACGCACAAACACGACCAGGCCGTGCGGCTGATACAGATCAGCGAGGAGACGCTGCGGGAGCAGCTGGAGCTGCAGCGCGGCTCCCCGTTCTACATCAACTCGCGCTTCAAGTGCGAGCTGTGCATCATGGGCTACTACACTCGGTGGCAGCTCCAAGAGCACCAGACGCACAAACACGACCAGGCCGTGCGGCTGATACAGATCAGCGAGGAGACTCTGCGGGAGCAGCTGGACCTGCAGCGCAGTTCGCCGTTCTACGTCAACTCGCGCTTCAAGTGCGAGCTCTGCATCAGGGGATACTACACACGTGCGGTCGGGATACCGTTGCAGGACCAGGCCGTGCGGCTGATACAGATCAGCGAGGAGACTCTGCGGGAGCAGCTGGACCTGCAGCGCAGTTCGCCGTTCTACGTCAACTCGCGCTTCAAGTGCGAGCTCTGCATCATGGGATACTACACACGTGCGGTCGGGATACCGTCGCAGGACCAGGCCGTGCGGCTGATACAGATCAGCGAGGAGACGCTGCGGGAGCAGCTGGAGCTGCAGCGCAGTTCGCCGTTCTACGTCAACTCGCGCTTCAAGTGCGAGCTCTGCATCATGGGATACTATACACGTTGGCAGCTCGAAGAGCACCAGAGGCACAAACATGTCGCCGGCTATGCGAGGGACGCGGCGCGAGGCGCGCGGTTCGCGATCGCGAGGCGTGAGATGCGCGGGCGCGGGGCGCGCGCGGCGCTGATCGGACGAGCGAGAATCATAGATTTCGATATAAGACGTAGCATACCTACCTACTACACTGCAATAAGGCATGTCGGTCGCGCCGCCCTCCGCGCCCGCGCCGCCCGCCGCGTCTCCTTTGATGGCAGCGCACGATGCCGCCACCGGGCGGCATCGCGGCGCGCCGCCGCCCGCCGCGCCCGCGTCTCCTTTGATAGCAGCGTGCGATGCCGACACGGGGCGGCGCGGGGGCGCAACAGCGCGGTGCGGTGCGGTGCTATAGCGAACATTCGACTCGGCCGGCGCGCCCGCCGCGCCGCCCCGCCTCCTCCGCACCGCCGCGGTCTGAAGCCGGGCCACTTGCAATGCTCGGTGTGCACGGCGTACATCCCGGAGATGTCGCTGGACGCGCACGAGCGGCTGCACCGCGCCATGTTCGTGTGCGTCAAGTGCGGGTTCAACAGCCGCGAGTCGCGGCGCGTGTGGACGCACGTGAGGACGCACGGCCCGCCCGCCAAGCCCAAGCCCGACAACCTGCCGTGCGCAGACTGCGGCAAACTCTTTCCGACCAAGAAGCGACTGAGTTACCACAAGCAGCGGCACCACGCGGAGCGCGTCACCTGCCACAACTGCGGCAAGAGCATCTCCAGCGAGAGCGCTCTTAAGGCCCATCTGCGCTACCACAAGCTGCGGCACCACGCGGAGCGCGTCACCTGCCACAACTGCGGCAAGAGCATCTCCAGCGAGAGCGCTCTTAAGGCCCATCTGCGAGCATCTCCAGCGAGAGCGCTCTTAAGGCCCATCTGCGGTGAGCGCACTCCGTCTGTTTCTTTACTGACCTGGAGCGAGAAGCGACTGAGCTACTACAAGCTGCGGCACCACGCGGAGCGCGTCACCTGCCACAACTGCGGCAAGAGCATCTCCAGCGAGAGCTCTCTTAAGGCCCATCTGCGACTGTGCCTATCGGAGCGCGAGCCTGTCCAGTGCCCGCAGTGCGACAAGAAGTATCTCGGGCCGAACAACCTGCGCGTGCACATGCGCTCGCACGCCAACCCGCCCGTCGAGAAGGCCGTCAAGTGCGTAGAGTGCGACGCGGTGTTCGCGAGCGAGTACAACTACAGGCAGCACCTCAAGAACAACATGAAGCACGCAGCCGAGGAGAAAATGCTGAAGTGCAGCGAGTGCAACAAAAAGTTTGCTGTGAAGGCCAATCTCCGAACGCACTACCGCTACCACCACCTACGCTCCACCGGCCACGTGTGCCGAGTCTGCGACAAGATGTTCGCGACGGCGCGCAGCTTGCGGCTGCACACCATGTACGTGCACGAGCGCGTCGCCAAGCCCAAGGACTGCATGTGCGAAGTTTGCGGCAAATCCTTTAACGCGACCGCGCTGCGCCATCACATGGCGGTGCACTCGAGCGCGCGCCCGTACGTGTGCCGGGTGTGCGGCGACACGTTCCGGCAGGGCGCCGCGCTCTACACGCACACCAAGCTTAAGCATCTCAAGCAGAAGCGCAAGCCCTCCGCCAAGAAGACCGCTCAAGCTGCCGACACTTAA
Protein Sequence: MLCWECEAFLRRCRRFRRRAETARTTLRHYLAGGSTGYDFIIESDRDCSRSPSLTNEEITSKISIELSPCDVYDEIPIKNEPDLDSDAEFAEDPLKPTLMRFEQDTETTPRPVKPRIITQQAFKQNRIPVVIKASSQVNFAELSKILKEKKNSLNEKQNIVLITKVPGKNQISINAGKITSDEDSNTTGTVRTPSESTSRTVSTRSASARKGAPATPAKVQVSLSGVLKPQPNTVAVNKRSAAGILSQDQAVRPIQISEETLREQLELQRGSPFYVNSRFKCELCIMGYYTRWQLQEHQTHKHDQAVRLIQISEETLREQLELQRGSPFYINSRFKCELCIMGYYTRWQLQEHQTHKHDQAVRLIQISEETLREQLDLQRSSPFYVNSRFKCELCIRGYYTRAVGIPLQDQAVRLIQISEETLREQLDLQRSSPFYVNSRFKCELCIMGYYTRAVGIPSQDQAVRLIQISEETLREQLELQRSSPFYVNSRFKCELCIMGYYTRWQLEEHQRHKHVAGYARDAARGARFAIARREMRGRGARAALIGRARIIDFDIRRSIPTYYTAIRHVGRAALRARAARRVSFDGSARCRHRAASRRAAARRARVSFDSSVRCRHGAARGRNSAVRCGAIANIRLGRRARRAAPPPPHRRGLKPGHLQCSVCTAYIPEMSLDAHERLHRAMFVCVKCGFNSRESRRVWTHVRTHGPPAKPKPDNLPCADCGKLFPTKKRLSYHKQRHHAERVTCHNCGKSISSESALKAHLRYHKLRHHAERVTCHNCGKSISSESALKAHLRASPARALLRPICGERTPSVSLLTWSEKRLSYYKLRHHAERVTCHNCGKSISSESSLKAHLRLCLSEREPVQCPQCDKKYLGPNNLRVHMRSHANPPVEKAVKCVECDAVFASEYNYRQHLKNNMKHAAEEKMLKCSECNKKFAVKANLRTHYRYHHLRSTGHVCRVCDKMFATARSLRLHTMYVHERVAKPKDCMCEVCGKSFNATALRHHMAVHSSARPYVCRVCGDTFRQGAALYTHTKLKHLKQKRKPSAKKTAQAADT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -