Nswa003309.1
Basic Information
- Insect
- Nematopogon swammerdamellus
- Gene Symbol
- -
- Assembly
- GCA_946902865.1
- Location
- CAMPPV010000088.1:158019-172562[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 29 0.00018 0.013 16.8 1.3 2 23 196 217 195 217 0.97 2 29 0.00071 0.054 14.9 0.1 3 20 269 286 267 288 0.92 3 29 7.5e-05 0.0057 17.9 0.8 2 23 309 331 308 331 0.96 4 29 8 6.1e+02 2.1 4.7 2 21 352 371 350 376 0.87 5 29 3.4 2.6e+02 3.3 2.8 1 23 382 405 382 405 0.95 6 29 0.061 4.6 8.8 0.1 1 23 424 446 424 446 0.95 7 29 5.8e-05 0.0044 18.3 1.1 2 23 484 506 483 506 0.93 8 29 0.0022 0.17 13.3 4.7 2 23 540 562 540 562 0.97 9 29 0.0064 0.48 11.9 0.1 1 23 612 635 612 635 0.96 10 29 0.00055 0.042 15.2 0.3 1 23 695 717 695 717 0.98 11 29 0.00073 0.055 14.8 3.2 2 23 729 750 728 750 0.97 12 29 2.7 2e+02 3.6 1.3 2 23 762 783 761 783 0.90 13 29 0.0043 0.32 12.4 1.0 1 23 793 815 793 815 0.98 14 29 1.1 81 4.9 6.9 1 23 843 865 843 865 0.96 15 29 0.57 43 5.7 3.0 1 23 876 898 876 898 0.97 16 29 1.7e-05 0.0013 20.0 1.0 1 23 906 928 906 928 0.98 17 29 0.13 9.9 7.7 1.8 2 23 951 973 950 973 0.97 18 29 0.094 7.1 8.2 2.5 2 23 1053 1075 1052 1075 0.94 19 29 0.012 0.9 11.0 0.2 2 23 1098 1119 1098 1119 0.96 20 29 1.5 1.2e+02 4.4 0.1 2 20 1123 1141 1122 1142 0.91 21 29 0.017 1.3 10.5 0.3 2 23 1200 1221 1199 1221 0.95 22 29 2.8 2.1e+02 3.5 4.4 3 23 1229 1249 1227 1249 0.96 23 29 0.16 12 7.5 1.7 1 23 1259 1282 1259 1282 0.92 24 29 3.3 2.5e+02 3.3 6.6 3 23 1300 1317 1299 1317 0.95 25 29 5.9 4.5e+02 2.5 1.7 2 21 1321 1340 1321 1341 0.93 26 29 0.74 56 5.4 1.1 2 23 1390 1411 1389 1411 0.94 27 29 0.17 13 7.4 0.5 2 23 1422 1444 1421 1444 0.95 28 29 8.7 6.6e+02 2.0 1.9 3 23 1461 1478 1460 1478 0.78 29 29 0.049 3.7 9.1 4.5 1 20 1481 1500 1481 1502 0.94
Sequence Information
- Coding Sequence
- ATGGCGCTCAAGCTCGGCAAGTGTCGGCTCTGCCTCAAGCTAGGCGACTTCTATTCAATATTCTCGGTGGACAGCTCCGTCCAACTAGCCGAGATGGCGATGGCTTGCGCGCAGGTGAAGATATACGAAGGGGATGGCTTGCCCGATAAAGTGTGTGGGGAGTGCGTGGAGAAGCTGAGCAGCGCCCACATCTTCAAGCAGCAGTGTGAACGCTCCGACCAGGAGCTACGCCGCAACTATGTCCCTCCGCAAGGATTCAGCCAAACACCTCCACCTCCCAACAGACAAAGCTCGGACTCAGGCTATTCCAATCGAACCGACGCTTCATTCCAACCCAAGAACATTTCCCAACCGGAGGAACCTCCCGCCCCCTCCTCATCCACGGGCTCCAACAGAAAAAGAAAACGTATCGACGTCAGCAAAAACAGCAAGAACCTCCTGCAGGAGTCGTTCAGCATGAATGTCGCGAGCCCTGCCCCCAGCGATTACTCCCGCCCCAAGACTCCGGATAAGCGACCGCGCTATGAGCAAGACTCCGACTATGAGTACTCGGGCCCCAACGACTCCGACTCCGAGTCCGAGATCAAGTGCAACAAGTGTGACCGCATCTTCCAGAACAAGCGAAGTCTCGCAATGCACCGTCGTGTCCACTCTAGGGACGAGAGGAACTCACTGCGCGCAGATGCTCTCGTCGATATCCCCTCGCCCGCCCCCGCCACGCCCGCCGCCACCCCCGCCGCCACCTCCACCGCCACCCCCGCCGCCACCTCCACCGCCACCTCTGCCCCCCGCGACGATCTCGCCTGCCCCACCTGCGGCAAGACCTTCAAGCTGCAGATAATGCTGAAGCGCCACGCCATGCTCTGCTGCGACGCTGCTCCCACCGCCGACCCTGTCGACGCACCGGCGCCACGAGATAAACTCACTTGCACAATATGCAACACGCACTTCAAAGCGTCCCCTAACCTGGCCAAGCACATGCGCGTAGTTCACGCCGCAGTGCTTCAAGAGGTCCCCGTGGAGGTGAGCGCCGACCGAGATATGATCTCTTGTCCGTGCCTATTTTGCTACACAAGCTTCAACGATTACCACAATTATGTGGCCCACTTCAACTCGTGCCCCGATCACAAGAAGCTCCCGCTCTACCACTGCGCTCTGTGTGACTCTCAAATAACTTTCAAGGGAAACTACTTTAGGCACCTGAAAGAGAAACACTTTGGTGTTGCATCAAGAAAGTCTACGGCGGTGACCGAGGAAGAAGAAGGTAGTTTCGATTGTCGCATCTGCAGTCAGAAGCTTGCGAATCAGGACCTCCTCATCACGCATCTAGCGGCGCACATGTCCAACGTCTATGGATCCAACACAGCCGGCGAGGGATCGGGCGTGAGCACCATCGAAGATGCAGTTTCTCTCAACTCGGAGTTGAGCGGCAACGGGCGGCAGTCACAAACGTGCCAGTACTGTGACAAGGCGTTCACGTACCGCAAGTCGCTCACCTCACACATACTAGCCAAGCACTCGGCACCAGACGTGCAAGTCAAGAGCGAGCCCACTGAATCCGTGTACCGAGACTCGGAGCCTGAGGAGGACGAGTGGAGCCAGGGCGAGACAGACAACACATGCGACATCTGCGAGAAGCAGTTCTCGTACCGCAAGACGCTCCTCCACCATAAACGCACCAAGCACCCCGTCACCTCCGGCCACAAGTTCTCCAAGGTCAACTTCAACAAGTGCGAGGTCAAGTGTCTCCTCTGTGACGTCACTATGCTTGTCGGCGAGATCAAGGCCCACAACCAAGTACACCTCGACGCCAACATCAAGCCCAAGTGCGTTTACGCATGTTCAGAGTGTGGCAACACTTACAAGGGCTCTCAACCCCTCCGCAACCACATCAAGCTCGTCCACAGACTTGGCGGAACCGAACCGACCAAGGAGAAATACCAGGTGACAGATGTGGCGAATTTTTGTGAAGTCGTTGTGACGAAAACGGAACCGGTGGATACTCTCCAAGGTCACAACGACTATCGGTCGGTTCCTGGTGAGGTTATTGATGGCATGAAGCCGATCGTCGACCTGAGCGGCTTCACCTGCCCCATCTGCAACAAGAAGATGGCCACACTCATCTCTTTAAAGAGGCATATTAACTGGCACAACAATGTGGGAAATAACATCCAGAAGAAAATCCAGTGCAAAATTTGCAATTTGGACTTTAAGTTCAATTCTCACTACAAGCTGCACATGAAAGAACATTACTTCGATACAAACTTAGACCCTAAGTTCCTTACGTGCTCCATCTGCAACCGTAAAAGTAAGCACTTGCGCGCCGCCCAGAGTCACAGCCTGTGGCACAAGCAGACTCGCTTCAGCAACAAGGATTACCAGTGCTCCATCTGCAAGAGGGTGTTCCAGTATCGAAAAGTTTACTTGAGCCACATGGCTGTGCACTTCAAAAAAGGGGAGAGCATAGAAAAAGCTGAATTTGATGCAAATTCCCAACCAAAAACTAGCACGGGCAGCGGAGAGGAACACAAGTGTCCGCACTGTCAAAAGATTCTCGATTCGGCGCATTCTCTCAAGTGTCACATGTCGTGGCATCGGTCCAAGTCCTCCCTGTTTGGTGCTCGCTACGAGTGCGAGATCTGCCGGCTCCAGTTCACCAACAAGCGTCGGCACGAGCTGCACCTGCGCTCGCACTACGAGGACGAGGCCGGCCCCTACAAGTGTCCCGTCTGCGGCAAGGGCTACAGCCATGAGGGCTACTTCCAGCGCCACGTCAAGGGCCACAACTTCGACCACCAGAGCCACCAGAAGAAGCGACAGAGGCTCCGCGAGATCCGCCAGAAGAAAGTCCAGTGCCCCATCTGCTGCCGGTACTATCCTGATCTACTGCACCTGGTTAGGCACATCCGCCGCACACACCCCCAGAGCAAAATGTTGAAGCCCGACCCGGACGCTCCACCCGAGAAGGTGTACTCGTGCAAGCTCTGCGCCAAGATCTTCCTCGACGAGAAGCGGCTGCAGTTCCACGAGGAGGCGCATCTCCGCAAGCCGATGCACTTCCGCTGCACGTTCTGCGGCCACAAGAATATCTCACGCAAGAACCACAACGTGCACGTCAAATCTCACCTCGTGAAGAAGTATCACGAGCAGCCCCTCGAGTGCCAGCACTGTGACGAGAAGTTCGTTCTGGGCTACGCTCTGCACCACCACCTGCGGGACGTGCACGGCATCAATGAGACATGGGCAGAAACGGCACCTGCCGAGCGACCCTTTGGCCCGCTGCAGGAGCGCCAGTGCTCTCTCTGCTACAAGGTGCTGGCGTCCCGCGCCAACTACGAGCGCCACATCGACTACCATAACTCCCTGCGTTGCAACTACTGTTTCGAGTACTTCAGCGGAAAAGTGTTCCTCGAGGGCCACCTCGCTTTCTCGTGCGAGAAACGACGCCTCATCGGCGACACGGAAGTGCACCCGAAGAGGATCAAGTGCTCCGAGTGCTACAAGGCATTCCATCTGCAGGTGAAGTTAGAGTGCCACATGTGGACGCAGCACGGCACGCGCGAGTTCCAGCGCACCGTAAGCAGCAAGCAGGAGCTTGTCTGCGACTTTTGCTTCCGTGTGTTTGAGAATGAGGAAGCTCTCACCAGCCACAAGCTGTACCACCGTACCATCGGCTACTACGGCTGCCTCTACTGCAAGAGGAAGTTCAACACAGTGACGGTCTACAAGAAGCACAAGAACCACCATTTGGCTCAGCTGTGCGTGGACAATCCCTTCAAGTGCGAGCACTGTGATGAAAAATTTGACTGGTTCCGCGACATGATCTACCACATGCGCGATGAGCACGGCGACGACAAGGAGTGGATCGTCATGCCGAAAGAGTCTGTGGAAGAGGATTGCGACATCTGTCACAAGCGGTTCTTCAACCTGCACCGCCACCTGCGCTACCACGAGGAGAACCGTTGTCGCAAGTGCCGCGAGTACTTCTACTCACGCACCGAGTTCGACGCTCATTTGTGCGCCGTCGAGAGCGACAACGAAGAGGTGAGCTATAACGATGACGGCACACACCAAGCCTACGAGGAGTGCGACTTCTGCTTCAAACCACTCTCCAAGTCAAATTCGAAAACGCTCCACGATTCGATACACAAAATGTCCGGGTCCATCTCGTGCCGGTTCTGCCCGAACAAGTTCAAGACGATGGATGCGTTCAACATCCACTCGTTCACACACCGCAACCGCAAGTACAAGAAAAATCCACTCACTTGCCACCTGTGTCGCGAAAAGTTTGTTGCGTACGGTCCCTTCATGCGGCACATCCGTGGGGTTCACAAGGTGCACGATAAGATGCACTACCGTGCGCCGCTGGTCGCGGAGCCGTGCGTCGTGTGCCACCAGTCCTTCCCCAACCTACACAACCACTACCGAGCTCATCTTCAACATCGATGTCCTAACTGTTCCAAGTACTTCACCTCCAACAGAACCTTCCTGAAGCACGTGTGCGATAAGGAAGACGACGACCCTTCCAAGGTTTTCACGTGCGAGGAGAATCTTCTGGTGTTGATCAACTCGTATGTGCCCAAAGAGGATATCTATGTGGCCAAATACTATGGACTGCAGGAGACGGAAGACGGCCGGGAAGTGGTTGAGGTTGAACCGATCCAGTCTACAGAACAAGTGCGGCCGTTCTCGGAAGGAGCACCCATCATCTCGGGAGTGACATCGCTGAACGCGCCACGCGCCGAGAAGAAATCACCGAGGAAAACAAACGGACAGACGGAAGACAGCGACGACGACTGCGTCGTTATCCTCGTAGAGGGCAACGAACCTCCGGGCCCCGTCATTACAGACGGCAGCGAGCGCGCGGGCGGCGCGTCCGCCGCGTTCGGCCGCTCGCGAGCTACTAGTCTCAAGAGGGTCTCACCGCGTAATGGTTACTCCACCGCGGTGGAGCGAAGGCTGTTGCCCGGGTAA
- Protein Sequence
- MALKLGKCRLCLKLGDFYSIFSVDSSVQLAEMAMACAQVKIYEGDGLPDKVCGECVEKLSSAHIFKQQCERSDQELRRNYVPPQGFSQTPPPPNRQSSDSGYSNRTDASFQPKNISQPEEPPAPSSSTGSNRKRKRIDVSKNSKNLLQESFSMNVASPAPSDYSRPKTPDKRPRYEQDSDYEYSGPNDSDSESEIKCNKCDRIFQNKRSLAMHRRVHSRDERNSLRADALVDIPSPAPATPAATPAATSTATPAATSTATSAPRDDLACPTCGKTFKLQIMLKRHAMLCCDAAPTADPVDAPAPRDKLTCTICNTHFKASPNLAKHMRVVHAAVLQEVPVEVSADRDMISCPCLFCYTSFNDYHNYVAHFNSCPDHKKLPLYHCALCDSQITFKGNYFRHLKEKHFGVASRKSTAVTEEEEGSFDCRICSQKLANQDLLITHLAAHMSNVYGSNTAGEGSGVSTIEDAVSLNSELSGNGRQSQTCQYCDKAFTYRKSLTSHILAKHSAPDVQVKSEPTESVYRDSEPEEDEWSQGETDNTCDICEKQFSYRKTLLHHKRTKHPVTSGHKFSKVNFNKCEVKCLLCDVTMLVGEIKAHNQVHLDANIKPKCVYACSECGNTYKGSQPLRNHIKLVHRLGGTEPTKEKYQVTDVANFCEVVVTKTEPVDTLQGHNDYRSVPGEVIDGMKPIVDLSGFTCPICNKKMATLISLKRHINWHNNVGNNIQKKIQCKICNLDFKFNSHYKLHMKEHYFDTNLDPKFLTCSICNRKSKHLRAAQSHSLWHKQTRFSNKDYQCSICKRVFQYRKVYLSHMAVHFKKGESIEKAEFDANSQPKTSTGSGEEHKCPHCQKILDSAHSLKCHMSWHRSKSSLFGARYECEICRLQFTNKRRHELHLRSHYEDEAGPYKCPVCGKGYSHEGYFQRHVKGHNFDHQSHQKKRQRLREIRQKKVQCPICCRYYPDLLHLVRHIRRTHPQSKMLKPDPDAPPEKVYSCKLCAKIFLDEKRLQFHEEAHLRKPMHFRCTFCGHKNISRKNHNVHVKSHLVKKYHEQPLECQHCDEKFVLGYALHHHLRDVHGINETWAETAPAERPFGPLQERQCSLCYKVLASRANYERHIDYHNSLRCNYCFEYFSGKVFLEGHLAFSCEKRRLIGDTEVHPKRIKCSECYKAFHLQVKLECHMWTQHGTREFQRTVSSKQELVCDFCFRVFENEEALTSHKLYHRTIGYYGCLYCKRKFNTVTVYKKHKNHHLAQLCVDNPFKCEHCDEKFDWFRDMIYHMRDEHGDDKEWIVMPKESVEEDCDICHKRFFNLHRHLRYHEENRCRKCREYFYSRTEFDAHLCAVESDNEEVSYNDDGTHQAYEECDFCFKPLSKSNSKTLHDSIHKMSGSISCRFCPNKFKTMDAFNIHSFTHRNRKYKKNPLTCHLCREKFVAYGPFMRHIRGVHKVHDKMHYRAPLVAEPCVVCHQSFPNLHNHYRAHLQHRCPNCSKYFTSNRTFLKHVCDKEDDDPSKVFTCEENLLVLINSYVPKEDIYVAKYYGLQETEDGREVVEVEPIQSTEQVRPFSEGAPIISGVTSLNAPRAEKKSPRKTNGQTEDSDDDCVVILVEGNEPPGPVITDGSERAGGASAAFGRSRATSLKRVSPRNGYSTAVERRLLPG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -