Nswa004163.1
Basic Information
- Insect
- Nematopogon swammerdamellus
- Gene Symbol
- -
- Assembly
- GCA_946902865.1
- Location
- CAMPPV010000118.1:559789-575482[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 6.1 4.6e+02 2.5 0.5 2 23 6 27 5 27 0.95 2 13 1.5 1.1e+02 4.4 1.5 1 23 1030 1053 1030 1053 0.90 3 13 0.19 14 7.2 0.5 1 23 1138 1160 1138 1160 0.97 4 13 6.8e-06 0.00051 21.2 0.7 2 23 1163 1184 1162 1184 0.97 5 13 2.6e-05 0.002 19.4 2.0 1 23 1190 1212 1190 1212 0.98 6 13 0.0016 0.12 13.7 3.7 2 23 1219 1241 1218 1241 0.97 7 13 0.0016 0.12 13.8 0.9 3 23 1279 1300 1278 1300 0.97 8 13 1.4 1.1e+02 4.5 0.2 2 23 1316 1336 1315 1336 0.94 9 13 3.6e-05 0.0028 18.9 1.1 1 20 1342 1361 1342 1364 0.92 10 13 0.00078 0.059 14.7 0.9 1 23 1372 1394 1372 1394 0.99 11 13 0.0082 0.62 11.5 7.4 1 23 1400 1422 1400 1422 0.98 12 13 2.2e-05 0.0017 19.6 2.9 1 23 1428 1452 1428 1452 0.96 13 13 0.00043 0.032 15.6 5.1 1 23 1458 1480 1458 1481 0.96
Sequence Information
- Coding Sequence
- ATGGATCAGCTGCAGCAATGTCCGGTGTGCACGCTGTACTTGCACAGCGGCATGTCGCTGGAGACTCACCTCGACACGCACCCCAAGGACCAGGTGATCCGCGCCCTCTGCAAGATGACGTCAGGGCGCAGCTACTCCGGCAGTCGCTGCACGACGCCCGCGCAGTCCGAGCGCTCCTACTGCAGCCGCTCGCGCACGCCCGGCTCCGTGCTGGATGGCCGCTCCACGCCAAAGACGCCCTTCTCGGAGGACAAGGAGCGGCGGAAGCGAGCACCGCGCACGCCGGCACCGCGCTGCAGCACGCCCGCCGACGCGTTCCGCTCGGACGTGCACTCGTACGACGGCTCGTCGCACTCGATGGCGCCGACGGTGAGCGTGGAGTGCTTCCTGAACAAGATGGAGCCGCCGGCGTACACGCGCAGCGGACCCACGTCCGATGGCTCGCACTATGTTTACATGCAGGAGCAGCCGCTGGAGGAGGTGGAATTGAAGTACTCGCGCAGCGACGAGTACGGTCTCAGCCAGGCGCGCTCCGACAACATGTTTGCATACAACGTGTCCGCGCACACTAATCCCCCGCGCCTGCGCCCCCACACCGCCGCACCCGCCGTGCGACCTCGGTCCGACTGCTTCGAAGTTCTTCCGAAAAACAGCAATAACATACCCTTCTTAAAGACGAATGTCACGCCTGTTCAGTATGTGAATCCTCCGGTGAAGCCTCTCCAGTTCATGGTGCCGACGGCGCAGGGCTTCGTCCAGGCGCAGCAGAACACCAACAACATGATAATATCGGGCGGGGTCAATGACATACTACAGCCAGTGGGCGGCAAGAACGTCGTCGGGCCCATGTTCAACCACCAGCTCAACCAGATGTCCTCGGGAGCGTTCACGCCCGGCACGACGGTCGTGACGCAGAACTCTCAGTTCTTCTACCGGGAGATGGTGCACAATATCGACGGCAAGCCGTACCTGTCAGCAATGCCGGCCGTGGTGAGCGTACGCGAGGATTTGACGGGCACCGCACCGAACCCCGTCTACCAGAATGTGATGGTGGTTAATCCGTACCCCAACGGTGCCTGCATGTACCCGCAGCAACATATCATGGCGACCACTTCCAGCGTCACTAATTACGAACAGTCCCTCAGCTACAACACTGAGAAGCGAGGCAAGACCTCCGCACGCCACTCTGCTCATCCCACCGAAATGGGTCAAACTCTTGTTATCGAGGTTGGACCCATTGATTCAGAACCCACCGCCACAGCAGAGAGCGGCGCGGAGCAACTCGCGTCGAATCCCGAACCATCGAGCTCGGTCAGTTCTGTCGCCGATTTCGAGGAGCGACGGAACGAGTTTGTCTCGGAGATGGCCAAGACGAAGAAGGGACTGAAGATTCTCAGCAACATCAAGGTGGAGGTCCCGATACAGCATCACAAGAGCATGCTCCACGAGGTGATGGACCTGACGGGCCCCACCGAAGAAGTGGAAGTGAAGATTGCCGAGCCGTGCCTCAACGCCAACGAGACAATCCTCCCCGACATCGAGGAGAGCAAGAGTCAGACCGACTCGGACATTCAGCATCCGTCCACCTCCGAGAGCGAAGCTAACGTCATCAACACATTCTCTGTTATTAAAAACATTGGAAATCCAAGCATATTCCGAGAGAGTACACCCAAGAGCAGCTATTCGGATTCCAAGGTGGACACCGATCAGAACGACAGCTGCTCTATTCCTGACCTCACATGTAAGGAGAAGGCGTCCATCTCCCCGTGCAGCGAGCTATCCGGGGACTTCGCAGACAACTCCCTGGACTCGTGTCCTCCCAGCATCAAGGTGGAGCCCGTGAAGACCGAGGAGCCCGTTCAGGCTTTCCGTAACAATTCACTCAAGCTGACCCAGCTGTACGTTAAGAAGAATAAGAAGATTCTCCAAATAAAAAATTTGAGAATTACAAATTCCACGTCCGATGGACAGGGCGCCAGCGGCAGTAGGGATGCAGGTGAAAGTAAAAATGAAGTAAGGGACAGCAAGTTTTCGCTACCGCCTAACCTCGTGGAGACTTTCAATCAGAACAACGTTCACTGCGCACCGGCTAAATCGGACAGCGCCGGCAAAGCTGAGAAACGAGATCAAACCGCCCGTCAGACACACATCGACAGCTTCGACGCCGATACGGAGGAGCAGTCGATGGATATCGAACCGATCTCGCATTCCGCTTCCTACAAGGAACACTTGGAGCAGACGCCCAAGCTAGAAGCCGGCCAGACCGAACGGGACAGTGTCGACAAGGAGCCTGAGAAGAAGGAGTTCGTTCAGCTCGAAACCATGCGGCCAGTCAACGTCATCGCGTACGGCAGCCTGACCGGAAATGGGTTCGGTTGCGACGCGAGCAAGGAAGCGTTAGACGGCGTCGGGCTGTCGAAGGATCGCTTCGTCAGCATGATGAGCGACAACTACTTTGGCGACAACATTATAGGTGATTACTTCACGCCGGACCGCACGGAGACGTTCGCCAACATGCGCGAGGAGCGCCAGCAGCCGCTGTACTGCGGCGAGGTGCAGAAGACGGAGCTGCCGACCCTGGAGGAGGAGCCGCCGTGCGCTAACGAGTACATGTGGGGCGAGTCGTCGCAGCGCGAGCCGTTCATGCTGCCCAATTTCATACACGAGAGTTACAAGGTCGCCGACTACTCCACCGTCAACAACGAAGCGAACTACGTGCTCAACGCGGACGGTGAGCTAGAGGAAGGGGAGTACCACGAGCTGACATGCCGCGCGGACGCCGACTACGAGCGCGTGAGCAAGCTGGAGATAGCGGAGGAGCGGAGCAGCGAGGGCGAGGTCGCACTGGACATCTGCGCGGACGAGCGCATGCCGCCGCGCGGGGAACTCTCGGGGCAGGAGAGCAACGGTGATATGGACGCGCCATGGAGCGGGATGTACCACAACATCAACAGTTCCACTTCGTACGATCTGATGGCTCGCGAGACCTGGGTATCGGACGGCTCCGACGTCGACGCCGCAGAGAAGCCTGACAGTCTAGACGACGTCCTCGATAAAAAGATGACCATTCAAATCCCAAAGCGTAGCTACAAGTGCGCCACGTGCGGCCTCGCCTTCAACTGCCCCAAGGAGCGCCGGGTCCACCGCGCGAAACAGCACCCAATGCCATCCACGGCCACCTCCAAGACGCCGAAGCAAATCCGACGGCGAATCACCACCGCGCTGTCCATCAAGAAGGAGGAGAAAGTTGAGGAGGCGCTGATCTTTCCGAATGCACCAATGGCCGCCTCGCAACTGACGGGCCCGATATCCTCGGCCATAATAGATATGTACGACCCGCAGATTGACTCAAAGCCGAAGCTGAAGACTGAGGTTGTGATCAAGGAGGAGCCGAGAAGAAGACGTCGCGACTACGTGTGCCCGATGTGCAAGGTGGACTTCGGCAACGAGCTGGCGTTCCACGAGCACCTCAAGCAGCACCCGCTCGAGTGTCTCACTTGCGGCAAATACTTCTACCGGCGCGCCAACCTGCAGTTGCACATCCGAACCCACCTCGCCATCAAGAACTACAAATGTGAGATTTGCGAGAAGCCGTTCTCCACGAAGCAGAAGCTGATGGAGCACCACAACATACACACGGGCGCCACGCCCGTCAAGTGCAGCCACTGCACGGCCACTTTCCGCCGATACTCCAACATGATACAGCACAGAAATCGCAATCACTTCCACATAAAGAAGAAGATCCGCGACTACGTGTGCCACTGCGGCGAGGTACTGCACTCGCGGCGCAAGCTGCTCTGGCACAAGGAGACGCACGACGGCAAGCCCAAGGCCTGCACGTACTGCAGCGACAAGTTCGTGCACGCGGCTTCGCTCACGCGGCACATACGCCGCGCGCACAACCGCTACTACGTGCCGGACGAAAGGCGCGCCAAGGAAAATATCGAGTGCCCCATCTGCAAACAGGTCTACCTCAAGAACAACATCGACATGCACCTCCAGACGCACACGGGCAAGAAGCCCTACAGCTGCGTCATTTGCAACAAGTCCTTCTCCACCAAGTGGAACCTGAAGCTTCACCGCTGGACGCACGCCAACCGCTCCGCCAAGCCGTTCAAGTGCACGCTCTGCAAGGGCGCCTTCATCCGGCAGACGGACTTCGTCTCGCACATGAACTCGCACAAGTCCGTGCGGCCGTACACGTGCAACTATTGCGGATGCCAGTTCATCCGCAAGTACAACTGCCTGCGTCACATGAAGGAGCACGAGGCGAAGAAGAAGCACGTGTGCAAGGTGCCGGAGTGCGGCAAGATGTTTCACCGCCGCTACTATCTGACGGAGCACATGCGCGTGCACAGCGGCACGAGGCCGTTCTCTTGCAACATCTGCGGCAAGACGAGTAGCAATAAGTCGAATCACAACAAGCATATAAAGATACATCACGCGCGCGAGCCGGTCGCCACGGAGGGCTAG
- Protein Sequence
- MDQLQQCPVCTLYLHSGMSLETHLDTHPKDQVIRALCKMTSGRSYSGSRCTTPAQSERSYCSRSRTPGSVLDGRSTPKTPFSEDKERRKRAPRTPAPRCSTPADAFRSDVHSYDGSSHSMAPTVSVECFLNKMEPPAYTRSGPTSDGSHYVYMQEQPLEEVELKYSRSDEYGLSQARSDNMFAYNVSAHTNPPRLRPHTAAPAVRPRSDCFEVLPKNSNNIPFLKTNVTPVQYVNPPVKPLQFMVPTAQGFVQAQQNTNNMIISGGVNDILQPVGGKNVVGPMFNHQLNQMSSGAFTPGTTVVTQNSQFFYREMVHNIDGKPYLSAMPAVVSVREDLTGTAPNPVYQNVMVVNPYPNGACMYPQQHIMATTSSVTNYEQSLSYNTEKRGKTSARHSAHPTEMGQTLVIEVGPIDSEPTATAESGAEQLASNPEPSSSVSSVADFEERRNEFVSEMAKTKKGLKILSNIKVEVPIQHHKSMLHEVMDLTGPTEEVEVKIAEPCLNANETILPDIEESKSQTDSDIQHPSTSESEANVINTFSVIKNIGNPSIFRESTPKSSYSDSKVDTDQNDSCSIPDLTCKEKASISPCSELSGDFADNSLDSCPPSIKVEPVKTEEPVQAFRNNSLKLTQLYVKKNKKILQIKNLRITNSTSDGQGASGSRDAGESKNEVRDSKFSLPPNLVETFNQNNVHCAPAKSDSAGKAEKRDQTARQTHIDSFDADTEEQSMDIEPISHSASYKEHLEQTPKLEAGQTERDSVDKEPEKKEFVQLETMRPVNVIAYGSLTGNGFGCDASKEALDGVGLSKDRFVSMMSDNYFGDNIIGDYFTPDRTETFANMREERQQPLYCGEVQKTELPTLEEEPPCANEYMWGESSQREPFMLPNFIHESYKVADYSTVNNEANYVLNADGELEEGEYHELTCRADADYERVSKLEIAEERSSEGEVALDICADERMPPRGELSGQESNGDMDAPWSGMYHNINSSTSYDLMARETWVSDGSDVDAAEKPDSLDDVLDKKMTIQIPKRSYKCATCGLAFNCPKERRVHRAKQHPMPSTATSKTPKQIRRRITTALSIKKEEKVEEALIFPNAPMAASQLTGPISSAIIDMYDPQIDSKPKLKTEVVIKEEPRRRRRDYVCPMCKVDFGNELAFHEHLKQHPLECLTCGKYFYRRANLQLHIRTHLAIKNYKCEICEKPFSTKQKLMEHHNIHTGATPVKCSHCTATFRRYSNMIQHRNRNHFHIKKKIRDYVCHCGEVLHSRRKLLWHKETHDGKPKACTYCSDKFVHAASLTRHIRRAHNRYYVPDERRAKENIECPICKQVYLKNNIDMHLQTHTGKKPYSCVICNKSFSTKWNLKLHRWTHANRSAKPFKCTLCKGAFIRQTDFVSHMNSHKSVRPYTCNYCGCQFIRKYNCLRHMKEHEAKKKHVCKVPECGKMFHRRYYLTEHMRVHSGTRPFSCNICGKTSSNKSNHNKHIKIHHAREPVATEG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -