Nswa010273.1
Basic Information
- Insect
- Nematopogon swammerdamellus
- Gene Symbol
- -
- Assembly
- GCA_946902865.1
- Location
- CAMPPV010000315.1:85497-108455[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.026 1.9 10.0 2.1 1 23 180 203 180 203 0.97 2 14 0.0011 0.086 14.2 0.7 1 23 210 232 210 232 0.97 3 14 3 2.2e+02 3.5 1.6 1 22 236 257 236 258 0.70 4 14 8.4 6.4e+02 2.0 0.4 1 8 261 268 261 269 0.91 5 14 0.0016 0.12 13.8 1.1 2 21 290 309 290 310 0.95 6 14 0.0016 0.12 13.8 1.1 2 21 335 354 335 355 0.95 7 14 0.0016 0.12 13.8 1.1 2 21 380 399 380 400 0.95 8 14 0.0002 0.015 16.6 1.2 2 23 443 465 443 465 0.97 9 14 2.5e-05 0.0019 19.4 0.8 1 23 471 493 471 493 0.98 10 14 0.18 14 7.3 0.6 6 22 506 522 502 526 0.89 11 14 6.7e-05 0.0051 18.1 0.4 1 23 534 557 534 557 0.91 12 14 7.8e-06 0.00059 21.0 0.6 1 23 563 586 563 586 0.97 13 14 0.007 0.53 11.7 0.4 3 23 596 617 595 617 0.91 14 14 0.042 3.2 9.3 0.3 1 23 623 646 623 646 0.95
Sequence Information
- Coding Sequence
- ATGTTCCATAGGAAAGGCCCGAGGACCGAACCCTGGGGACACCCCATGGTGGAGGTCTTCCAGACAACTCTGGCGCCACAGTATAATCCGACCTTCCTTCTGGCGAAGTATGAGCTTAGGACCCTTGCGATGTCCGAGGAGCTGGGAGCTCTCTGCTGCGGGTGCCTGGTGGCGGGGCGCCGCGTGTGGCCGCTGCGAGACTCGGACCTGCACGACATGTACGCGCAGCTCAGCCAAGCTCCCACGGAGCTGGAGCTGGGCGCGTGGGACGTCGTGTGCTGGGAGTGTCGCTCGCTGCTGCTGAGAATACTCGCCTTCAAGCGGCAAGTCCAACCAGAAACATTTGCGAACAGCATAACAAATGATGTTGAAGAGGTAAAAGAACCAAAGCCTAAGAAAGAACTGAAAGAAAAGAAGAAAGGAGATAGGAAAGAGAAAAAGAAACAGAAAGAAATAAAACTGATAACTCTGACACACGAAGAGATGTTGAAAGAGCGTGAGAAGGAAGCTGTGGCCGACTACTTCGTGAAGTGCCCACATCAATGTAAAGACTGTATTTTGGGTTTTAAGTACGAGAGGACATTGCAGACGCATATAGAGACGAAACATGCTGAGACGGCGGGCTCGCATGTATGCGCCATATGCAATGTTCGTTTTACAACAGCGGTACAATACGAGGAACACTCACGACGACACCTGCAACGTTACAAGTGTTGCGTCTGCGGTAAGAAAAGTCTGACGCTGCTGCCTATGCTGAAACACGTTCGCAATCACAAGGAGTACAAGTGTGAGGTGTGCGGGCAGCTCTCGGGGTACGTACTGCTGTTGTTGTCGTCGTTGTGTTGTTATTTTTTTCCGCAGAAGCCGCAGTGCGTGGAGTGCAGTAAGATGTTCAGCTCGCGCAAGACTTATCGCTACCACATGAAGTTAGTTGTCTTGTCCGTGTGCAGGTCTCTGTTCCGCCACCAGACGCACACGGCGAGGGAGCACAGAGAGAAGCCGCAGTGCGTGGAGTGCAGTAAGATGTTCAGCTCGCGCAAGACTTATCGCTACCACATGAAGTTAGTTGTCTTGTCCGTGTGCAGGTCTCTGTTCCGCCACCAGACGCACACGGCGAGGGAGCACAGAGAGAAGCCGCAGTGCGTGGAGTGCAGTAAGATGTTCAGCTCGCGCAAGACTTATCGCTACCACATGAAGTTAGTTGTCTTGTCCGTGTGCAGGTCTCTGTTCCGCCACCAGACGCACACGGCGAGGGAGCACAGAGAGAAGCCGCAGTCTCTGTTCCGCCACCAGACGCACACGGCGAGGGAGCACAGAGAGAAGCCGCAGTGCGTGGAGTGCAGTAAGATGTTCAGCTCGCGCAAGACGTATCGCTACCACATGAATGTCATACACAAGGGGCAGAATCGTTTCCCGTGCCCGCACTGCGGCAAGATATACCAGTGGAAGTCCAATCTGTGGAGACACATCAAGAATCATAAGGCGCGCGACAACGGTGAACTGTTCTGCGCTCCGTGCGATAAAAAGTTCTCCTCCATCGCGACGTATCAGCAGCATCTCAAGATCTCGCGCAAACACGTCACCGAGAACGAGTTCAACTACATGTGCAGCGAGTGTGGGAAGAAGTTTGCGAACAAGACGCGGCTGCGCGACCACGTCGACTGGGACCACCTCAAGAAGATCAACTACCGCTGTCTCGTCTGCGATAAGCCCTTCAAGAGCAACACGTCGCTGTACGTGCACATGCAGAATGTGCACAAGAACAAGGACGAGAAGGACAACCTGTGCCACGTCTGCGGCAAGTCTTATCAGAACATAGCCAAGTTGAAGTACCACATAGTGGCGATGCACACTACGGAGACGCCCTACAGCTGCGACCAGTGCCCCAGCGCCTTCTCCTGGTACTCCTCGCTCTACAGGCACGTCAAGGAGGTGCACGAGAAGGTTCGTCTGAAGAAGAAGCGCGTCCGCCGCAAGGATGGCGCCCCGCCCGCACCCCCGCTGCAGCCCCCGCAGTCCCACCTGCCTCCTCAACATATGTAG
- Protein Sequence
- MFHRKGPRTEPWGHPMVEVFQTTLAPQYNPTFLLAKYELRTLAMSEELGALCCGCLVAGRRVWPLRDSDLHDMYAQLSQAPTELELGAWDVVCWECRSLLLRILAFKRQVQPETFANSITNDVEEVKEPKPKKELKEKKKGDRKEKKKQKEIKLITLTHEEMLKEREKEAVADYFVKCPHQCKDCILGFKYERTLQTHIETKHAETAGSHVCAICNVRFTTAVQYEEHSRRHLQRYKCCVCGKKSLTLLPMLKHVRNHKEYKCEVCGQLSGYVLLLLSSLCCYFFPQKPQCVECSKMFSSRKTYRYHMKLVVLSVCRSLFRHQTHTAREHREKPQCVECSKMFSSRKTYRYHMKLVVLSVCRSLFRHQTHTAREHREKPQCVECSKMFSSRKTYRYHMKLVVLSVCRSLFRHQTHTAREHREKPQSLFRHQTHTAREHREKPQCVECSKMFSSRKTYRYHMNVIHKGQNRFPCPHCGKIYQWKSNLWRHIKNHKARDNGELFCAPCDKKFSSIATYQQHLKISRKHVTENEFNYMCSECGKKFANKTRLRDHVDWDHLKKINYRCLVCDKPFKSNTSLYVHMQNVHKNKDEKDNLCHVCGKSYQNIAKLKYHIVAMHTTETPYSCDQCPSAFSWYSSLYRHVKEVHEKVRLKKKRVRRKDGAPPAPPLQPPQSHLPPQHM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -