Basic Information

Insect: Nematopogon swammerdamellus
Gene Symbol: -
Assembly: GCA_946902865.1
Location: CAMPPV010000827.1:410704-415852[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.0036 0.27 12.6 6.2 1 23 233 256 233 256 0.96

2 10 0.19 15 7.2 0.4 1 23 263 285 263 285 0.96

3 10 0.00018 0.014 16.7 0.2 1 23 331 353 331 353 0.99

4 10 0.00066 0.05 15.0 2.1 1 23 357 379 357 379 0.96

5 10 8.9e-05 0.0068 17.7 0.6 1 23 387 409 387 409 0.97

6 10 0.0003 0.023 16.0 0.8 3 23 417 438 415 438 0.95

7 10 1.2e-05 0.00091 20.4 3.4 1 21 494 514 494 516 0.91

8 10 0.00013 0.01 17.1 0.7 1 23 522 544 522 544 0.97

9 10 2.5e-05 0.0019 19.5 0.6 1 23 550 572 550 572 0.98

10 10 0.00025 0.019 16.3 0.5 1 23 578 600 578 600 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.0036	0.27	12.6	6.2	1	23	233	256	233	256	0.96
2	10	0.19	15	7.2	0.4	1	23	263	285	263	285	0.96
3	10	0.00018	0.014	16.7	0.2	1	23	331	353	331	353	0.99
4	10	0.00066	0.05	15.0	2.1	1	23	357	379	357	379	0.96
5	10	8.9e-05	0.0068	17.7	0.6	1	23	387	409	387	409	0.97
6	10	0.0003	0.023	16.0	0.8	3	23	417	438	415	438	0.95
7	10	1.2e-05	0.00091	20.4	3.4	1	21	494	514	494	516	0.91
8	10	0.00013	0.01	17.1	0.7	1	23	522	544	522	544	0.97
9	10	2.5e-05	0.0019	19.5	0.6	1	23	550	572	550	572	0.98
10	10	0.00025	0.019	16.3	0.5	1	23	578	600	578	600	0.98

Sequence Information

Coding Sequence: atgccgtttggcctctgcaatgctcctgctacattcgagaggttaatgaatcgagtatttgctgaattGATCCTTGACGAAGCCGGGAGAGGGAATGCGATGATACTCGACGCCGCCGCGCACTCTGTCAACACTGCGGTGAGTATTGTACGCGGGACGTACGGAGCGGAGTCGGTGAGCTACGCGTACTGGGTGATGAGGGACTGGCCACCGCGGGTGCTGAGATTGGTAAGTACGACAACCGCACTGTCATTCAGCGATGTATGTTCACCGATCGCCTCCGATACGGAATGCAAGGAAGAAGTGGAAGCATGGACCGTTACGGAACCTTATATGGTGTTCAACGTTGCTGAGGTGGACGATGTTGAAGAAGATGTTGGTGTGGTGGTTCTGAACTCACACAAGGACCGTCCGCCGGAGCGGCCGCCGCCTCCGAAGAAACGACGAAGTGAACAACCGCAAGCGAAGGCAGACAAAACGCGAAAGAAACCGGTCGCCAAAGTCGACAGGCAAAAGAAACCAAAAGCCAACGCCGACGCGAAGAACCGAACGAGAGTGGCCAGAGTGAAGGCGGAGAGAAAAACGGACAGACAGACAGACAAGAAGATGGACGCCGCCGTGGAGATGCTCACAGCGACTGCGGACGAGCTGAACGCTTATAGAACGAACGTGCTCAGTACGATGCGTCCGTACAAGTACACCTGCACACATTGCGTGGAGAATTTCTCATCGGAACACAGTTTTAAGAGACACATTGCCATTTGTCATACTGAGACGTGCGGTGCCTTCGTCTGCGACATCTGCAACTGCGGACTCGCGTCGGGCGAGAAACTGGAACAGCACCGGAGCAATCACTTCCGCCTGTTCCGCTGTCTGTATCCGGGCTGCGGCTTCTTGCATCACAAGAGGGCCACCGTGCGGGTCCATCACAGACGGCACGTCGACAAACTGATCTCGGAGGGCACCGGGAGCTCCGGCCCGCCGGTGAACTACGAGTGCGATTATTGCGGAGCGACGTACGCGCTCCGCGCGCAAATGTATCGACACATCAAAATGCATCAGGGCCGTTACCTCTGCGAAAATTGCGGCAAAGCCTTCATCTGCCGCTCCAGCCTCCAGACGCACTACCTGACACACGCGAGCATCGACGCGAGGCCGTTCCCGTGCGAGCGGTGCTCGAGAAAATTCATAACTAAAGACAAGCTGGCCATTCACATGCTTTACCACGAAGGCGTCAAGCCGTTCGGCTGCGATGAGTGCGATAGAAAATTTCGCGTAAAACCGGATTTAACCAGACACAAAATGCTGCGACACTCGACGCGGCAGCCGGCGCAGAAGCGGAAGCTCACGAGGACCAAATCACAGTTTAGAAATGAAAAGTTTCTAGTTGATAGAACAAGATGGCATGCAGCCAGAGCGGAGGGCGGGAAGACGGACGGCGTTTCGCGTGGAGATTACGCGTCCGTTCAGAAACCTCCGTTTCAGTGTCACGTGTGCGGGAAGAACTTTAATCAGAAATCGCATTTGGCTTCGCACGCGGTTTTTCACACGGGCGATCGGCCGCATAAATGCAATGAGTGCGACTTAACCTTCAGGTATAGGCCGGGATTGTGGGCCCACAAGCTGGTGCACAAGGGTGTGAAGGCGCATCAGTGTACAGTTTGCGGCGCGCAGTTCACGCTGAAGGGGAATCTGAACGGCCATATGAAGATCCACACAAAGGACAAACCTTACGAGTGTGATATTTGCGGGCAGAGGTTTCCGTGGAGAAGAAATTTGAGAAACCATTTTAAAGTACATTCTAAACAGTAA
Protein Sequence: MPFGLCNAPATFERLMNRVFAELILDEAGRGNAMILDAAAHSVNTAVSIVRGTYGAESVSYAYWVMRDWPPRVLRLVSTTTALSFSDVCSPIASDTECKEEVEAWTVTEPYMVFNVAEVDDVEEDVGVVVLNSHKDRPPERPPPPKKRRSEQPQAKADKTRKKPVAKVDRQKKPKANADAKNRTRVARVKAERKTDRQTDKKMDAAVEMLTATADELNAYRTNVLSTMRPYKYTCTHCVENFSSEHSFKRHIAICHTETCGAFVCDICNCGLASGEKLEQHRSNHFRLFRCLYPGCGFLHHKRATVRVHHRRHVDKLISEGTGSSGPPVNYECDYCGATYALRAQMYRHIKMHQGRYLCENCGKAFICRSSLQTHYLTHASIDARPFPCERCSRKFITKDKLAIHMLYHEGVKPFGCDECDRKFRVKPDLTRHKMLRHSTRQPAQKRKLTRTKSQFRNEKFLVDRTRWHAARAEGGKTDGVSRGDYASVQKPPFQCHVCGKNFNQKSHLASHAVFHTGDRPHKCNECDLTFRYRPGLWAHKLVHKGVKAHQCTVCGAQFTLKGNLNGHMKIHTKDKPYECDICGQRFPWRRNLRNHFKVHSKQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -