Nswa027977.1
Basic Information
- Insect
- Nematopogon swammerdamellus
- Gene Symbol
- -
- Assembly
- GCA_946902865.1
- Location
- CAMPPV010001261.1:86237-98143[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 1.1 80 4.9 3.6 1 23 148 170 148 170 0.97 2 21 1.4e-05 0.0011 20.2 0.6 1 23 200 222 200 222 0.98 3 21 0.002 0.15 13.4 1.8 1 23 229 251 229 251 0.98 4 21 0.0023 0.17 13.3 1.5 1 23 277 299 277 299 0.98 5 21 0.0023 0.17 13.3 1.5 1 23 325 347 325 347 0.98 6 21 0.002 0.15 13.4 1.8 1 23 373 395 373 395 0.98 7 21 0.0023 0.17 13.3 1.5 1 23 421 443 421 443 0.98 8 21 0.002 0.15 13.4 1.8 1 23 469 491 469 491 0.98 9 21 0.0023 0.17 13.3 1.5 1 23 517 539 517 539 0.98 10 21 0.0023 0.17 13.3 1.5 1 23 565 587 565 587 0.98 11 21 0.0023 0.17 13.3 1.5 1 23 613 635 613 635 0.98 12 21 0.002 0.15 13.4 1.8 1 23 661 683 661 683 0.98 13 21 0.002 0.15 13.4 1.8 1 23 709 731 709 731 0.98 14 21 0.002 0.15 13.4 1.8 1 23 757 779 757 779 0.98 15 21 0.0023 0.17 13.3 1.5 1 23 805 827 805 827 0.98 16 21 0.0023 0.17 13.3 1.5 1 23 853 875 853 875 0.98 17 21 0.002 0.15 13.4 1.8 1 23 901 923 901 923 0.98 18 21 0.002 0.15 13.4 1.8 1 23 949 971 949 971 0.98 19 21 0.002 0.15 13.4 1.8 1 23 997 1019 997 1019 0.98 20 21 5.4e-05 0.0041 18.4 1.6 1 23 1025 1049 1025 1049 0.99 21 21 0.00022 0.016 16.5 2.4 1 23 1055 1077 1055 1077 0.99
Sequence Information
- Coding Sequence
- ATGTCTCGTCCGGCGCCATTATCAGAGCCTCAGCTGCTCCCTACATCCAAAGCCTCCAAGGTCAACCTGTTGTCTTTACGCTTGGTGAAGCGATATCAAAATAAGCGATTCGTCGCCGCACCGGACCGGGACAAGTTGCCGCAGCGCATCTGCTACAAGTGTCGCCACCTGGTGGACCTGTGCTACGAGCTGCGCGACTCTGCCGAGCGCACGAACCGTCTGCTCACCGAAGCCACTAGCAACTCGGATCAACTTCCGCCACAGAATGACGTGAAGAAAGAAATTCTGAACAGTGAAGAAACCGGGATATTCACAGAAGACACATTTAACAATCTCGTCGACGAGGATTATCCTGATCCAGGCCCGACTGAACAGAGATTGGAAGAGGATCCGGCGGTGCCTGGCTCCGACCTCACTCCGTACGTGAACATGAGAAGGCCGTTCCGATGCGAGCAGTGCGACCAGGAAGTTCTGAACAAGACGCAGCTCGTTCATCATCATCTGAGACATTTGAATTTGAACCCGTTCTTCTGCCGACAGCCCGGCTGCAGTTACATTGGCAAGTCTAAGCACGGCTACACGCACGGCGGACGCTCGTACGTCTGCGAAACATGCGGCTCCTCCTTCCGCCGCAACTTCGACCTGCAGCAACACATCATCCGGCACGCAGACGAGGGCACACGCTTCCCGTGCCGCCGCTGCGGTGTCGTGTGCGCCAACAGGATCACGTACCGCAGCCACATGAGGACGCACGAGCGAGCACGCAGGTGTGTTGACAAAGTAGTCCTGCAGCAACACATCATCCGGCACGCAGACGAGGGCACACGCTTCCCGTGCCGCCGCTGCGGTGTCGTGTGCGCCAACAGGATCATGTACCGCAGCCACATGAGGACGCACGAGCGAGCACGCAGGTGTGTTGACAAAGTAGTCCTGCAGCAACACATCATCCGGCACGCAGACGAGGGCACACGCTTCCCGTGCCGCCGCTGCGGTGTCGTGTGCGCCAACAGGATCATGTACCGCAGCCACATGAGGACGCACGAGCGAGCACGCAGGTGTGTTGACACAGTAGTCCTGCAGCAACACATCATCCGGCACGCAGACGAGGGCACACGCTTCCCGTGCCGCCGCTGCGGTGTCGTGTGCGCCAACAGGATCACGTACCGCAGCCACATGAGGACGCACGAGCGAGCACGCAGGTGTGTTGACACAGTAGTCCTGCAGCAACACATCATCCGGCACGCAGACGAGGGCACACGCTTCCCGTGCCGCCGCTGCGGTGTCGTGTGCGCCAACAGGATCATGTACCGCAGCCACATGAGGACGCACGAGCGAACACGCAGGTGTGTTGACACAGTAGTCCTGCAGCAACACATCATCCGGCACGCAGACGAGGGCACACGCTTCCCGTGCCGCCGCTGCGGTGTCGTGTGCGCCAACAGGATCACATACCGCAGCCACATGAGGACGCACGAGCGAGCACGCAGGTGTGTTGACAAAGTAGTCCTGCAGCAACACATCATCCGGCACGCAGACGAGGGCACACGCTTCCCGTGCCGCCGCTGCGGTGTCGTGTGCGCCAACAGGATCATGTACCGCAGCCACATGAGGACGCACGAGCGAGCACGCAGGTGTGTTGACAAAGTAGTCCTGCAGCAACACATCATCCGGCACGCAGACGAGGGCACACGCTTCCCGTGCCGCCGCTGCGGTGTCGTGTGCGCCAACAGGATCATGTACCGCAGCCACATGAGGACGCACGAGCGAGCACGCAGGTGTGTTGACACAGTAGTCCTGCAGCAACACATCATCCGGCACGCAGACGAGGGCACACGCTTCCCGTGCCGCCGCTGCGGTGTCGTGTGCGCCAACAGGATCATGTACCGCAGCCACATGAGGACGCACGAGCGAGCACGCAGGTGTGTTGACACAGTAGTCCTGCAGCAACACATCATCCGGCACGCAGACGAGGGCACACGCTTCCCGTGCCGCCGCTGCGGTGTCGTGTGCGCCAACAGGATCACGTACCGCAGCCACATGAGGACGCACGAGCAAGCACGCAGGTGTGTTGACACAGTAGTCCTGCAGCAACACATCATCCGGCACGCAGACGAGGGCACACGCTTCCCGTGCCGCCGCTGCGGCGTCGTGTGCGCCAACAGGATCACGTACCGCAGCCACATGAGGACGCACGAGCGAGCACGCAGGTGTTTTGACACAGTAGTCCTGCAGCAACACATCATCCGGCACGCAGACGAGGGCACACGCTTCCCGTGCCGCCGCTGCGGTGTCGTGTGCGCCAACAGGATCACATACCGCAGCCACATGAGGACGCACGAGCGAGCACGCAGGTGTGTTGACAAAGTAGTCCTGCAGCAACACATCATCCGGCACGCAGACGAGGGCACACGCTTCCCGTGCCGCCGCTGCGGTGTCGTGTGCGCCAACAGGATCATGTACCGCAGCCACATGAGGACGCACGAGCGAGCACGCAGGTGTGTTGACACAGTAGTCCTGCAGCAACACATCATCCGGCACGCAGACGAGGGCACACGCTTCCCGTGCCGCCGCTGCGGTGTCGTGTGCGCCAACAGGATCATGTACCGCAGCCACATGAGGACGCACGAGCGAGCACGCAGGTGTGTTGACACAGTAGTCCTGCAGCAACACATCATCCGGCACGCAGACGAGGGCACACGCTTCCCGTGCCGCCGCTGCGGTGTCGTGTGCGCCAACAGGATCACGTACCGCAGCCACATGAGGACGCACGAGCAAGCACGCAGGTGTGTTGACACAGTAGTCCTGCAACAACACATCATCCGGCACGCAGACGAGGGCACACGCTTCCCGTGCCGCCGCTGCGGCGTCGTGTGCGCCAACAGGATCACGTACCGCAGCCACATGAGGACGCACGAGCGAGCACGCAGGTGTTTTGACACAGTAGTCCTGCAGCAAAACATCATCCGGCACGCAGACGAGGGCACACGCTTCCCGTGCCGCCGATGCGGCGTCGTGTGCGCCAACAGGATCACGTACCGCAGCCACATGAGGACGCACGAGCGAGCACGCAGTTACAAATGCGAGCGTGTGGGGTGCCCGAAGGCGTTCTACCACCGCGCGGAGCTGCGCACGCACACACGCTCGCACGACAACGACCGCAGCTACCGCTGCCATCTGTGCGTGTCCTCCTACATCTCACAGTCGCAGCTCAATCGACACGTGCGTATGCACCAGATACGCCGACTCAACAAGTGCGACAAGTGTTGCGCCACCTTCGACAACTACGCCGCGTTCTGCAACCACCGCATCCGCACGCATGGCGCCTGGCAACCGCACAAGTGCATCGGCTGCAATCAGGGGGGTGAGTCGCAACTGTTTTACTGTACCGTGTGGGGCCGGTACTTCGACAACTACGCCGCGTTCTGCAACCACCGCATCCGCACGCACGGCGCCTGGCAACCGCACAAGTGCATCGGCTGCAACCAGGGTGGTGAGTCGCGACCGTTTTACTGTACCGTGTGGGGCCGGTACTTCGACAACTACGCCGCGTTCTGCAACCACCGCATCCGCACGCACGGCGCCTGGCAACCGCACAAGTGCATCGGCTGCAACCAGTGTGGTGAATCGCGACCGTTTTACTGTACCGTGTGGGGCCGGTACTTCGACAACTACGCCGCGTTCTGCAACCACCGCATCCGCACGCACGGCGCCTGGCAACCGCACAAGTGCATCGGCTGCAACCAGTGgtaCCAGAGCGAAGCGCACCTGGAGAAGCACACACTGCGATGCAAGCTGGCCATCAACGTGAAGACTCTGCTCGGCGCGGAGGACGTCAACTCTCTCGGCCTGCCCAGCCCTCAGCAGGATGGTGAGTCGGGGCAGGGTCTGCTCTGCAGCGAGGAGAGTATGGGGATGGACACCCTCGACTCCCTTCTGCTTCGCAACCTGAAGTCCGCACCCGTCGTTGTGACCCCGGGCAACATGGACTCCGTAAAGGCTGGCAACGGAGATGGACTACTGTACATCGAGGTGGACGACGAAGGACTTAACATGGAGCCTTCCCCCTCTCCGCAGCACACTCTCCAACAATAA
- Protein Sequence
- MSRPAPLSEPQLLPTSKASKVNLLSLRLVKRYQNKRFVAAPDRDKLPQRICYKCRHLVDLCYELRDSAERTNRLLTEATSNSDQLPPQNDVKKEILNSEETGIFTEDTFNNLVDEDYPDPGPTEQRLEEDPAVPGSDLTPYVNMRRPFRCEQCDQEVLNKTQLVHHHLRHLNLNPFFCRQPGCSYIGKSKHGYTHGGRSYVCETCGSSFRRNFDLQQHIIRHADEGTRFPCRRCGVVCANRITYRSHMRTHERARRCVDKVVLQQHIIRHADEGTRFPCRRCGVVCANRIMYRSHMRTHERARRCVDKVVLQQHIIRHADEGTRFPCRRCGVVCANRIMYRSHMRTHERARRCVDTVVLQQHIIRHADEGTRFPCRRCGVVCANRITYRSHMRTHERARRCVDTVVLQQHIIRHADEGTRFPCRRCGVVCANRIMYRSHMRTHERTRRCVDTVVLQQHIIRHADEGTRFPCRRCGVVCANRITYRSHMRTHERARRCVDKVVLQQHIIRHADEGTRFPCRRCGVVCANRIMYRSHMRTHERARRCVDKVVLQQHIIRHADEGTRFPCRRCGVVCANRIMYRSHMRTHERARRCVDTVVLQQHIIRHADEGTRFPCRRCGVVCANRIMYRSHMRTHERARRCVDTVVLQQHIIRHADEGTRFPCRRCGVVCANRITYRSHMRTHEQARRCVDTVVLQQHIIRHADEGTRFPCRRCGVVCANRITYRSHMRTHERARRCFDTVVLQQHIIRHADEGTRFPCRRCGVVCANRITYRSHMRTHERARRCVDKVVLQQHIIRHADEGTRFPCRRCGVVCANRIMYRSHMRTHERARRCVDTVVLQQHIIRHADEGTRFPCRRCGVVCANRIMYRSHMRTHERARRCVDTVVLQQHIIRHADEGTRFPCRRCGVVCANRITYRSHMRTHEQARRCVDTVVLQQHIIRHADEGTRFPCRRCGVVCANRITYRSHMRTHERARRCFDTVVLQQNIIRHADEGTRFPCRRCGVVCANRITYRSHMRTHERARSYKCERVGCPKAFYHRAELRTHTRSHDNDRSYRCHLCVSSYISQSQLNRHVRMHQIRRLNKCDKCCATFDNYAAFCNHRIRTHGAWQPHKCIGCNQGGESQLFYCTVWGRYFDNYAAFCNHRIRTHGAWQPHKCIGCNQGGESRPFYCTVWGRYFDNYAAFCNHRIRTHGAWQPHKCIGCNQCGESRPFYCTVWGRYFDNYAAFCNHRIRTHGAWQPHKCIGCNQWYQSEAHLEKHTLRCKLAINVKTLLGAEDVNSLGLPSPQQDGESGQGLLCSEESMGMDTLDSLLLRNLKSAPVVVTPGNMDSVKAGNGDGLLYIEVDDEGLNMEPSPSPQHTLQQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -