Nswa010941.1
Basic Information
- Insect
- Nematopogon swammerdamellus
- Gene Symbol
- zfh1
- Assembly
- GCA_946902865.1
- Location
- CAMPPV010000338.1:265485-292583[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 8e-05 0.0061 17.8 3.0 1 23 185 207 185 207 0.98 2 13 0.61 46 5.6 1.8 1 23 214 237 214 237 0.92 3 13 0.00018 0.013 16.8 0.8 1 23 269 292 269 292 0.97 4 13 3.4 2.6e+02 3.3 0.0 1 23 299 322 299 322 0.87 5 13 2.2e-05 0.0017 19.6 0.6 1 19 333 351 333 355 0.92 6 13 0.00042 0.032 15.6 1.8 1 23 361 383 361 383 0.98 7 13 4.1 3.1e+02 3.0 6.3 1 11 389 399 389 420 0.80 8 13 0.0001 0.0077 17.5 0.3 1 23 426 449 426 449 0.95 9 13 0.00016 0.012 16.9 2.0 3 23 457 478 456 478 0.95 10 13 1.8e-05 0.0014 19.9 1.3 1 22 484 505 484 509 0.94 11 13 0.095 7.2 8.2 3.5 1 23 517 540 517 540 0.94 12 13 0.0012 0.091 14.1 2.2 1 23 579 601 579 601 0.98 13 13 0.00025 0.019 16.3 0.2 1 22 607 628 607 628 0.94
Sequence Information
- Coding Sequence
- ATGTGGGACGTGCGTGTGTGCGTCGCGTGCCTCGCTACCGACGTGAGGATGTACAGCATGAGCGCCAGCGGTCTGCTGCAGCCCTACCAACTGCTCGCCGGCGTCCAGGTACAATCTTATCAACTGCTCGTTCGAGTGCCCCTAAAGAGTGGCGACGGAATGCCCCAGAAGTTGTGCTGGGAGTGTGCGGCACTCGTGAACAAGTTCAACTTGTTCAGACACAAGTGTGAGAGAGCCTATCTACTGCTGCAGGACATCTACAACCAACATGATGAGAAGTTGTGCTGGGAGTGTGTGGCACTCGTGAACAAGTTGAACTTGTTCAGGCACAAGTGCGAGAGAGCCTATCTACTGCTGCAGGACATCTACAACCAACATGATGAGAAGTTGTGCTGGGAGTGTGCGGCACTCGTGAACAAGTTGAACTTGTTCAGGCACAAGTGCGAGAGAGCCTATCTACTGCTGCAGGACATCTACAACCAACATGAGGAGGAACAAATGGGAGATATCGTGCGAGCGAGACAGCACTGTGATAAATACAAGAACGCTCGGTTCAAGTGCACAATATGCTATATAGCGTTCAAGAATGATTACGAGCTGAACCGGCACCTTCGACATCACGACCCCAGCGAGGGTAAATATGAATGCGACGTCTGCAAGTGTCGCTACAAGTCGCGCGTGAGGATCGCCGTTCACGTCTCGCGCTACCACGCCAAGACGTACGCGTGCAATACGTGCACGCACGTCTCCTACGACCTTTCGCAAATATTGTACCGCCGGCACTGTAGTGCGGAGCACGGCCAGTTTGTGTGCGGGGAGTGCGGGAAGAACTGTCGCAGCAACGGCGGCCTCACTATGCACAAGAATCGCGCTCATTCTACGGAGACATATAAATACAAATGTGACATATGCGCGGCTCCGCTGAGGAACAAGCTTGCCATCGGAGCTCACTACAGGGAGCTACATCCCGATGCTGTGGTCGAGGTGCCGAGGACTTTCATATGTGAAACGTGCGGAAAGGCGTTTAAGAGTGCGGCTCACCTAAGGAAGCACGACTTGGTGCATACTGGCGCGCGTGAGCACCAGTGCAAGCTGTGCCCCAAGAGCTTCTTGCGACGCTCGGCGTTCGCGGAACACGCGCGCACACATTCGGACGTGCGCCCTTACGTGTGCCACGTGTGCGGGAAGGGCTTCAAGTGCAAGCTGAGCCCCAAGAGCTTCTTGCGACGCGCGGCGTTCGTGAACCACGCGCGCACACATTCGGACGTGCGCACTTACGTGTGCCACGTGTGCGGGAAGGGCTTCAAGACGCTGGGCGTGCTACGCGAGCACGCGAGCAGCATGCATAACACTACGCGCGACCGTGCCTGCAAGCTGTGCCCCAAGCGTTTCAGCAACGCTAAGAACCTGTGGATGCACGTAAAGAACTGCCACAACGCCGTACGGCCTTACGTATGCGATATATGCAGAAAGGGGTTTAACTTCAAGTCTGAGCTGAAGACACATATGCAGAAGAAGACGGTGCACAAGCTGGGCCGGCCGCCCACGTACCACTGCACTCGGTGCGACGTCGAGTTCTCGACTCAGAGCGAGTGCATCGCGCACCGCCAGCTCACGCACCCGGCACGCTTCCTCAGCACGCCGCTCCACGACGCGCAACAAGCACTCGAGATACAGGGCAAGGGATTCCAGTACATTGCTGTACCAAAGAGCGCGCACACAATATCACGCACATACAAGTGTAAGATTTGTATGAGGAGTTTCTCGAACTACTCCCTGCTCTACTTGCACAACAAGGTGCACTCGGACGAGAGGCCGTTCGCTTGTGATGCGTGCGGAAAGGCGTTCAAGTTCAAGGCATCAGTCAAGAGGCACATGTTGACGGACGGCAGCGAGCGCGCGGACGGCGCGTCCGCCGCGTTCGGTCGCTCGCGAGCTACTAGTCTCAAGAGGGTCCTTCCGCGTAATGGTTACTCCACCGCGGTGGAGCGAAGGCTGTTGCCCGGGTAA
- Protein Sequence
- MWDVRVCVACLATDVRMYSMSASGLLQPYQLLAGVQVQSYQLLVRVPLKSGDGMPQKLCWECAALVNKFNLFRHKCERAYLLLQDIYNQHDEKLCWECVALVNKLNLFRHKCERAYLLLQDIYNQHDEKLCWECAALVNKLNLFRHKCERAYLLLQDIYNQHEEEQMGDIVRARQHCDKYKNARFKCTICYIAFKNDYELNRHLRHHDPSEGKYECDVCKCRYKSRVRIAVHVSRYHAKTYACNTCTHVSYDLSQILYRRHCSAEHGQFVCGECGKNCRSNGGLTMHKNRAHSTETYKYKCDICAAPLRNKLAIGAHYRELHPDAVVEVPRTFICETCGKAFKSAAHLRKHDLVHTGAREHQCKLCPKSFLRRSAFAEHARTHSDVRPYVCHVCGKGFKCKLSPKSFLRRAAFVNHARTHSDVRTYVCHVCGKGFKTLGVLREHASSMHNTTRDRACKLCPKRFSNAKNLWMHVKNCHNAVRPYVCDICRKGFNFKSELKTHMQKKTVHKLGRPPTYHCTRCDVEFSTQSECIAHRQLTHPARFLSTPLHDAQQALEIQGKGFQYIAVPKSAHTISRTYKCKICMRSFSNYSLLYLHNKVHSDERPFACDACGKAFKFKASVKRHMLTDGSERADGASAAFGRSRATSLKRVLPRNGYSTAVERRLLPG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -