Nswa015655.1
Basic Information
- Insect
- Nematopogon swammerdamellus
- Gene Symbol
- -
- Assembly
- GCA_946902865.1
- Location
- CAMPPV010000511.1:240078-251981[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 1.8e-05 0.0013 19.9 1.5 1 23 19 42 19 42 0.97 2 13 0.33 25 6.5 1.8 1 11 61 71 61 71 0.94 3 13 1.2e-05 0.00088 20.5 0.9 1 23 70 93 70 93 0.97 4 13 1.8e-05 0.0013 19.9 1.5 1 23 112 135 112 135 0.97 5 13 1.8e-05 0.0013 19.9 1.5 1 23 154 177 154 177 0.97 6 13 0.33 25 6.5 1.8 1 11 196 206 196 206 0.94 7 13 1.2e-05 0.00088 20.5 0.9 1 23 205 228 205 228 0.97 8 13 1.8e-05 0.0013 19.9 1.5 1 23 247 270 247 270 0.97 9 13 7.4 5.6e+02 2.2 0.9 1 8 289 296 289 297 0.90 10 13 1.8e-05 0.0013 19.9 1.5 1 23 307 330 307 330 0.97 11 13 0.0019 0.15 13.5 0.5 1 23 333 356 333 356 0.95 12 13 6.9e-06 0.00052 21.2 1.5 1 23 365 387 365 387 0.97 13 13 3.7e-05 0.0028 18.9 1.4 1 23 393 416 393 416 0.95
Sequence Information
- Coding Sequence
- ATGCTCTACTCCTGCGCCGTCTGCAGTAACAATAGTGACTCGGTTGCCGGCAGGTTTAGCTGCGACAAGTGCGACAAGAAGTTCATCAGCGAGACGGCGCTGAAGCAGCACGTGCGCTACTACCACATGCTCTACTCCTGCGCCGTCTGCAGTAACAATAGTGACTCGGTTGCCGGCAGGTTTAGCTGCGACAAGTGCGACAAGAAGTTTAGCTGCGACAAGTGCGACAAGAAGTTCATCAGCGAGACGGCGCTGAAGCAGCACGTGCGCTACTACCACATGCTCTACTCCTGCGCCGTCTGCAGTAACAATAGTGACTCGGTTGCCGGCAGGTTTAGCTGCGACAAGTGCGACAAGAAGTTCATCAGCGAGACGGCGCTGAAGCAGCACGTGCGCTACTACCACATGCTCTACTCCTGCGCCGTCTGCAGTAACAATAGTGACTCGGTTGCCGGCAGGTTTAGCTGCGACAAGTGCGACAAGAAGTTCATCAGCGAGACGGCGCTGAAGCAGCACGTGCGCTACTACCACATGCTCTACTCCTGCGCCGTCTGCAGTAACAATAGTGACTCGGTTGCCGGCAGGTTTAGCTGCGACAAGTGCGACAAGAAGTTTAGCTGCGACAAGTGCGACAAGAAGTTCATCAGCGAGACGGCGCTGAAGCAGCACGTGCGCTACTACCACATGCTCTACTCCCGCGCCGTCTGCAGTAACAATAGTGACTCGGTTGCCGGCAGGTTTAGCTGCGACAAGTGCGACAAGAAGTTCATCAGCGAGACGGCGCTGAAGCAGCACGTGCGCTACTACCACATGCTCTACTCCTGCGCCGTCTGCAGTAACAATAGTGACTCGGTTGCCGGCAGGTTTAGCTGCGACAAGTGCGACAAGAATAACAATAGTGACTCGGTTGCCGGCAGGTTTAGCTGCGATAAGTGCGACAAGAAGTTCATCAGCGAGACGGCGCTGAAGCAGCACGTGCGCTACTACCACATGCTCTACTCCTGCGCCGTCTGCAGTAAGCGGTTGAACAACTGGTACTCGCTGGACAAGCACGTGAAGTTCGTGCACGAGGGCCGGGAGATGCCGCGCAAGCACATCTGCGAGACTTGCGGCAAGGCGTTCAAGACGCGGCGCGCGCTCGACAGTCACCAGATGACGCACACGGGCGAGCGGCCGCACGCGTGCGATCTCTGCGGATCCACGTTCGCGCAGAAGTCGACGCTGCGCACGCACCGGCGGCTCGTGCACTTCAAGATCAAGAAGGAGGCGCCTACGGCCGTCGCGAGCCGCATACAGTTCGAATAA
- Protein Sequence
- MLYSCAVCSNNSDSVAGRFSCDKCDKKFISETALKQHVRYYHMLYSCAVCSNNSDSVAGRFSCDKCDKKFSCDKCDKKFISETALKQHVRYYHMLYSCAVCSNNSDSVAGRFSCDKCDKKFISETALKQHVRYYHMLYSCAVCSNNSDSVAGRFSCDKCDKKFISETALKQHVRYYHMLYSCAVCSNNSDSVAGRFSCDKCDKKFSCDKCDKKFISETALKQHVRYYHMLYSRAVCSNNSDSVAGRFSCDKCDKKFISETALKQHVRYYHMLYSCAVCSNNSDSVAGRFSCDKCDKNNNSDSVAGRFSCDKCDKKFISETALKQHVRYYHMLYSCAVCSKRLNNWYSLDKHVKFVHEGREMPRKHICETCGKAFKTRRALDSHQMTHTGERPHACDLCGSTFAQKSTLRTHRRLVHFKIKKEAPTAVASRIQFE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -