Nswa006919.4
Basic Information
- Insect
- Nematopogon swammerdamellus
- Gene Symbol
- Zbtb8b
- Assembly
- GCA_946902865.1
- Location
- CAMPPV010000204.1:55401-71656[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.0017 0.13 13.7 3.8 1 23 256 278 256 278 0.99 2 17 0.024 1.8 10.0 0.5 1 23 285 307 285 307 0.98 3 17 3.7 2.8e+02 3.2 0.3 1 23 311 334 311 334 0.89 4 17 0.41 31 6.2 5.3 1 23 341 363 341 364 0.95 5 17 4.4e-05 0.0034 18.7 0.8 2 21 370 389 370 394 0.92 6 17 0.00039 0.03 15.7 0.1 2 21 408 427 408 428 0.94 7 17 3.6e-06 0.00027 22.1 0.3 2 23 468 489 468 489 0.97 8 17 0.0046 0.35 12.3 4.7 1 23 495 517 495 517 0.97 9 17 0.00051 0.039 15.3 2.0 1 21 523 543 523 548 0.93 10 17 0.038 2.9 9.4 0.2 1 23 556 579 556 579 0.90 11 17 0.0062 0.47 11.9 0.1 1 23 585 608 585 608 0.96 12 17 0.39 29 6.2 0.1 1 11 617 627 617 631 0.87 13 17 0.0062 0.47 11.9 0.1 1 23 632 655 632 655 0.96 14 17 0.39 29 6.2 0.1 1 11 664 674 664 678 0.87 15 17 0.021 1.6 10.3 0.2 3 23 681 702 679 702 0.95 16 17 2.3e-05 0.0017 19.6 0.8 1 23 711 733 711 733 0.98 17 17 3.8e-05 0.0029 18.9 0.4 1 23 739 762 739 762 0.96
Sequence Information
- Coding Sequence
- ATGATGGTACCAGCCGTTACAGAGGAGACAGGAGCTCAGGTTTGCCGCGGCTGCCTGAGTACGGGACGCCGCATGATGGACGCGCGGCATTATTCCGAGCTCTACGCGGAACTCACACACGTTCAGATGATGGCGGAGGCGGCCGCGCGTCTGTGTTGGGAGTGCGCCGCGCAGCTGACGCGCGCGGTGCGTGTGCGTCGCAAGTTCCTGCGCAGTCAGACGCTGCTCGCGGAGTATGCTTGCTTGCAGTTGTGTCCGTGGGACAAGGAGTCTCCGGCGCTGGCGACGTGCGCCACGCTCAGCGTGAGCTTCGACTGCCAGCGCAGCGCCAGCGGCTTCCACTCCACCCTCACGCACGAGAAGTGTTACCCGACGACGTTCACCAGCCTGCTGGACGCACACAAGGAGGAGGTTGATGTCAAGGAGGAGTTTGCTGGCGGTAGCGACTACGAGGATCACATCGCGCTGGACGAGTTTAAGCAGCTGACGGTGAGCGCGGATGAGGACAGCGAATGCAAAGTGAAGCTGGAGGAGCAGCACTCCCTCGCCGCGCCCGCCGCCAGGAAGAGGAAGAAAAAGGACAAGCACGAACGGAGGAAAAGAGTGAAGAAGGAGACGCCACAGACAACGGAGGAGCCGGCGGCGCGCGTGCGGCGACCCGTCGAGGTGGACCCCGACAAGATCAGGCTGATTCAACTCGATCCCGTCGAGCAGGTTCGCGCGCGGGCGGCGGCTGCGAACTCGTCCGGGTTCTTGCGGTTTCCGTTCAAGTGTGAGCTCTGCTACCGGGGCTTCAACTACGAGGCCAAGCTGCACAACCACATGAAGAAACATGATCCGGGACgcggcaagttcgagtgcaagctgtgcagcatgttcttgccgtctatatactcttacaacgtgcacatgctgacgcacacgacacgctacgagtgcgtccgctgcggcaagCAGATGATCGACCGCGGATGCATAGTGGAGCACTACGAGACGGCGCACGAGGGCAAAGTGCAGCAGTTCACCTGCCGGCTGTGCGGCAAGATATCCTCCAACAGCAAAACTCACCGCGGCCACATGCGCAACCACCACAGCGGGGAGCGGCCGCGGTGCGACCAGTGCGGCAAGACATTTGTCAACAAGGACTCTCTCAGCGAGCACATACTCAAAAGCAAAACTCACCGCGGCCACATGCGCAACCACCACAGCGGGGAGCGGCCGCGTTGCGACCAGTGCGGCAAGACATTTGTCAACAAGGACCCTCTCAGCGAGCACATACTCAACAGCAACACTCACTGCGGCCACATGCGCAACCACCACAGCGGGGAGCGGCCGCGGTGCGACCACAACAGCAACACTCACCGCGGCCACATGCGCAACCACCACAGCGGGGAGCGGCCGCGGTGCGACCAGTGCGGCAAGACATTTGTCAACAAGGACTCTCTCAGCGAGCACATACTAATCCACCAAGGCATCAAGAACCACGAGTGCGAAGCCTGCGGCGACCGCTTCCGCACCAAGACCCAGCTGAAGCACCACCAGCTGAAGCACACCACCGCTAGAGACTTCTACTGCGTGGAGTGCGACGTGCGCTTCAAGAGCGCGCACAACCTGCGGCAACACTTGAGCAAGTCCACGCGGCACAGAGACAACGACGCGCTCAAGTACTTGTGCCCGCGGTGCCCGCGCCGGCTGGACTCGGCGCGAGCGCTCGAGCACCACATCGCGTTCGGCCACGAGGGCCGCCGGCTGCACCCGTGCGCCGAGTGCGGCGCGCAGCTCGCCACGCGCAACTCGCTCGCGAAGCACACGCGCGTCGCGCACCAGGGCTACCGCGCGCCGCTCAAGCACGTCTGCGACACGTGCGGACGCGCGTTTCGCGGCCGCCGGCTGCACCCGTGCGCCGAGTGCGGCGCGCAGCTCGCCACGCGCAACTCGCTCGCGAAGCACACGCGCGTCGCGCACCAGGGCTACCGCGCGCCGCTCAAGCACGTCTGCGACACGTGCGGACGCGCGTTTCGCGGCCGCCGGCTGCACCTGTGCGCCGAGTGCGGCGCGCAGCTCGCCACGCGCAACTCGCTCGCGAAGCACACGCGCGTCGCGCACCAGGGCTACCGCGCGCCGCTCAAGCACGTCTGCGACACGTGCGGACGCGCGTTCCGCGGTaagaacgttctggtgaatcacatgcggacgcacacgggcgagaagccgtacgagtgcggcgagtgcggccgcaagttcagccagcgcaccgccatgcgcacccacgtcaagctggtgcacctcaagctcaagcgagGGGCGAAGGTGCGCGAGGTGGCGGCCGCGAAGCTGGCGCCGCCGCCGCCGCCGCCCAAGGACGAGGTGCTCGCGGCGTACGAGCCCTGGTGCCGGCCGCACCAGTCCGACGTGTTCTACGTGCCGGGCGGCGACGCCTGA
- Protein Sequence
- MMVPAVTEETGAQVCRGCLSTGRRMMDARHYSELYAELTHVQMMAEAAARLCWECAAQLTRAVRVRRKFLRSQTLLAEYACLQLCPWDKESPALATCATLSVSFDCQRSASGFHSTLTHEKCYPTTFTSLLDAHKEEVDVKEEFAGGSDYEDHIALDEFKQLTVSADEDSECKVKLEEQHSLAAPAARKRKKKDKHERRKRVKKETPQTTEEPAARVRRPVEVDPDKIRLIQLDPVEQVRARAAAANSSGFLRFPFKCELCYRGFNYEAKLHNHMKKHDPGRGKFECKLCSMFLPSIYSYNVHMLTHTTRYECVRCGKQMIDRGCIVEHYETAHEGKVQQFTCRLCGKISSNSKTHRGHMRNHHSGERPRCDQCGKTFVNKDSLSEHILKSKTHRGHMRNHHSGERPRCDQCGKTFVNKDPLSEHILNSNTHCGHMRNHHSGERPRCDHNSNTHRGHMRNHHSGERPRCDQCGKTFVNKDSLSEHILIHQGIKNHECEACGDRFRTKTQLKHHQLKHTTARDFYCVECDVRFKSAHNLRQHLSKSTRHRDNDALKYLCPRCPRRLDSARALEHHIAFGHEGRRLHPCAECGAQLATRNSLAKHTRVAHQGYRAPLKHVCDTCGRAFRGRRLHPCAECGAQLATRNSLAKHTRVAHQGYRAPLKHVCDTCGRAFRGRRLHLCAECGAQLATRNSLAKHTRVAHQGYRAPLKHVCDTCGRAFRGKNVLVNHMRTHTGEKPYECGECGRKFSQRTAMRTHVKLVHLKLKRGAKVREVAAAKLAPPPPPPKDEVLAAYEPWCRPHQSDVFYVPGGDA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -