Nswa010057.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Nematopogon swammerdamellus
Gene Symbol
-
Assembly
GCA_946902865.1
Location
CAMPPV010000305.1:1-21044[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 44 1.1e-06 8.3e-05 23.7 0.1 1 23 357 379 357 379 0.98
2 44 0.098 7.4 8.1 1.9 3 23 385 406 383 406 0.94
3 44 0.0034 0.26 12.7 0.0 2 23 412 434 411 434 0.94
4 44 0.38 29 6.3 0.6 3 14 439 450 438 451 0.85
5 44 0.0014 0.11 13.9 0.1 2 23 537 559 536 559 0.95
6 44 0.44 33 6.1 0.4 2 17 565 580 564 581 0.90
7 44 0.38 29 6.3 1.3 2 23 587 609 586 609 0.95
8 44 0.44 33 6.1 0.4 2 17 615 630 614 631 0.90
9 44 0.38 29 6.3 1.3 2 23 637 659 636 659 0.95
10 44 0.44 33 6.1 0.4 2 17 665 680 664 681 0.90
11 44 0.38 29 6.3 1.3 2 23 688 710 687 710 0.95
12 44 0.44 33 6.1 0.4 2 17 716 731 715 732 0.90
13 44 0.38 29 6.3 1.3 2 23 738 760 737 760 0.95
14 44 0.44 33 6.1 0.4 2 17 766 781 765 782 0.90
15 44 0.0029 0.22 12.9 0.3 2 23 788 810 787 810 0.95
16 44 0.44 33 6.1 0.4 2 17 816 831 815 832 0.90
17 44 0.38 29 6.3 1.3 2 23 839 861 838 861 0.95
18 44 0.44 33 6.1 0.4 2 17 867 882 866 883 0.90
19 44 0.38 29 6.3 1.3 2 23 889 911 888 911 0.95
20 44 0.44 33 6.1 0.4 2 17 917 932 916 933 0.90
21 44 0.38 29 6.3 1.3 2 23 939 961 938 961 0.95
22 44 0.44 33 6.1 0.4 2 17 967 982 966 983 0.90
23 44 0.38 29 6.3 1.3 2 23 990 1012 989 1012 0.95
24 44 0.44 33 6.1 0.4 2 17 1018 1033 1017 1034 0.90
25 44 0.38 29 6.3 1.3 2 23 1040 1062 1039 1062 0.95
26 44 0.44 33 6.1 0.4 2 17 1068 1083 1067 1084 0.90
27 44 0.38 29 6.3 1.3 2 23 1091 1113 1090 1113 0.95
28 44 0.44 33 6.1 0.4 2 17 1119 1134 1118 1135 0.90
29 44 0.38 29 6.3 1.3 2 23 1142 1164 1141 1164 0.95
30 44 0.44 33 6.1 0.4 2 17 1170 1185 1169 1186 0.90
31 44 0.38 29 6.3 1.3 2 23 1192 1214 1191 1214 0.95
32 44 0.44 33 6.1 0.4 2 17 1220 1235 1219 1236 0.90
33 44 0.38 29 6.3 1.3 2 23 1243 1265 1242 1265 0.95
34 44 0.38 29 6.3 1.3 2 23 1293 1315 1292 1315 0.95
35 44 0.44 33 6.1 0.4 2 17 1321 1336 1320 1337 0.90
36 44 0.38 29 6.3 1.3 2 23 1344 1366 1343 1366 0.95
37 44 0.44 33 6.1 0.4 2 17 1372 1387 1371 1388 0.90
38 44 0.87 66 5.1 0.8 2 23 1394 1416 1393 1416 0.94
39 44 0.44 33 6.1 0.4 2 17 1422 1437 1421 1438 0.90
40 44 0.38 29 6.3 1.3 2 23 1445 1467 1444 1467 0.95
41 44 0.00047 0.035 15.4 1.4 2 23 1473 1494 1472 1494 0.95
42 44 0.027 2.1 9.9 0.1 1 23 1500 1523 1500 1523 0.96
43 44 0.054 4.1 8.9 5.1 1 23 1529 1551 1529 1552 0.95
44 44 0.58 44 5.7 5.3 3 23 1559 1580 1558 1580 0.94

Sequence Information

Coding Sequence
TTGTGCTTCGGATCGGCTCACGCTGGACAGCTGTTCCTGGCGGAGGAGGTGGAGCTGGAGCGGCGGCCGTACTGCGCCGACACCGTGCGCCTCGCTGACATGCTCGCTGTCCTCACCGGCACACCCAACGTGCCGGCGACTGCGTTCTCGCGCGCGACCGGAGAGGTGCCGTCTCACGTTAGCGGAACGGTGCGAGCGAGAGGGCGACACCTCGGTCGGCGAGGCAGTCAGAGCCGTCAACGCGCTGGGCCGGAAGTGAACGCAGGTTACGAGCGAATCGCCGCGAGCGAGCGACCCGGCGGGGCTCAGAAAAATGCGGCTAGTTCACCGAGCGACTCCGTTGGTCGCGGCGTAAATCGCGCCGGCAAATTGATTATAATCGGGACGCCGGGCGCGGTGTTTAAAGCGGTCGGGCAAGGCGTCGCGGACCGGACCGACTTCCCGGTGTGCGGGCGTGAGCGGTGCCGCAGCGTGACGCGTGTCGTCGGTGGCTGCGGGCCGCGGTATTCACGCGGGGCACAGGCGCAGCGCGCGGAAGCCGGACGAAGAGGTATGGTTCCAAGGTTGGGGCAGAGCGGGCAGGCACGCGAGTCGAGCCTGGTGGATGCGAACGAGCACGCAGTACGGATTATGTGCGCGGTGCACGGCCACGTGCGGCGCGCGAGCTGCACCGGCAGTAGCGAGTCTCCGGACTCGGAGGGACTCGGGCAGCTCCCGGCGGAGCGCGGCGAGGCCGCAGCACCAGTGGAGGATGAGACGGGGCTACCGGAGGGGGTGTGTCTAGCGTGCGCCGCCGCCGCCATCGACGCCTACATCTTCCTCCAGTTCTGTCGCTACTCGGCGAGCACGTGGCGCGACCTGCGCCGCACCCTCATGCGCGCCGCCGCCTCCGTTGCACCCGACACCGACACAAAGTCACTGTTCGTGTTCGTGGAGAGCGGATGCACGAGTGTGGCGGCGGACGCGAGACCGGCGCCGCCCGCTGGCGAGCCGCGCCGCCTGCTGCGCCGAGCCCGCTCGCTGCGCGCCCGCGAGCGCCGGCGCGCGTTGCGCGAGCGCGCGCGCAGCTTCCAGTGCGCGGGGTGCGGCAAGACCTTCGCAACGGCAAGCGCACTCAGCCGGCACACCGCTACGCACGAGCGTCGCCTCGCCTGTACGCACTGCGCCAAGGCGTTCCACTCGCGCTCCGTGCTCAACATGCACGTGACGCGAGTGCACGGCGACAAGAGCCTGCCGTGCCCGCTCTGCACCAAGCTCTTCCCCTCACGCCCGCTCCTCACCGCGCACATCAAGGAGATACACACCTACGCCGACTGCAAGCACTGCGGCAAGACCTACAGACCAAAAGCGAACGGCGCACGGCGGCGCGGAGGCGAGCCGGCGGTGCGGTGCGGGGAGGTGGTGCGAGAGGGGTCCTTAGAGGCGACGAACGAAATACTTCAGCTCTGCGCCAAAGATGTCCGGCACTCGCTGCGGAAGCACGAGCGGAGTCACGGGCCGCGCGTGCCGTGCGACACCTGCCCCGGCATGTTCCGCTCGGCGGAGATCCTGCGCGCGCACTCGGCGCGCTGCCCCGGCGCCGGCGCCGCGCGCCCGCCCGCGCGCGTCCCCTGCGCCCTCTGCCCCAACACGTACTCGTCCCGGGGCACGCTGCAGCAGCACATGCGCTACGCGCACGGCGACCACCCGCTCCGCTGCGCGCACTGCGGCAAGAAGTACATGGACAAGAACAAGCTGCGGTATGTACCCACGCCTACCTACTGTGCGCTCTGCCCCAACACGTACTCGTGCCGGGGCACGCTGCAGCAGCACATGCGCTACGCGCACGGCGACCACCCGCTCCGCTGCGCGCACTGCGGCAAGAAGTACATGGACAAGAACAAGCTGCGGTATGTACCCACGCCTACCTACTGTGCGCTCTGCCCCAACACGTACTCGTGCCGGGGCACGCTGCAGCAGCACATGCGCTACGCGCACGGCGACCACCCGCTCCGCTGCGCGCACTGCGGCAAGAAGTACATGGACAAGAACAAGCTGCGGTACTTACTACCCACGCCTACCTACTGTGCGCTCTGCCCCAACACGTACTCGTGCCGGGGCACGCTGCAGCAGCACATGCGCTACGCGCACGGCGACCACCCGCTCCGCTGCGCGCACTGCGGCAAGAAGTACATGGACAAGAACAAGCTGCGGTATGTACCCACGCCTACCTACTGTGCGCTCTGCCCCAACACGTACTCGTGCCGGGGCACGCTGCAGCAGCACATGCGCTACGCGCACGGCGACCACCCGCTCCGCTGCGCGCACTGCGGCAAGAAGTACATGGACAAGAACAAGCTGCGGTATGTACCCACGCCTACCTACTGTGCGCTCTGCCCCAACACGTACTCGTACCGGGGCACGCTGCAGCAGCACATGCGCTACGCGCACGGCGACCACCCGCTCCGCTGCGCGCACTGCGGCAAGAAGTACATGGACAAGAACAAGCTGCGGTACTTACTACCCACGCCTACCTACTGTGCGCTCTGCCCCAACACGTACTCGTGCCGGGGCACGCTGCAGCAGCACATGCGCTACGCGCACGGCGACCACCCGCTCCGCTGCGCGCACTGCGGCAAGAAGTACATGGACAAGAACAAGCTGCGGTATGTACCCACGCCTACCTACTGTGCGCTCTGCCCCAACACGTACTCGTGCCGGGGCACGCTGCAGCAGCACATGCGCTACGCGCACGGCGACCACCCGCTCCGCTGCGCGCACTGCGGCAAGAAGTACATGGACAAGAACAAGCTGCGGTATGTACCCACGCCTACCTACTGTGCGCTCTGCCCCAACACGTACTCGTGCCGGGGCACGCTGCAGCAGCACATGCGCTACGCGCACGGCGACCACCCGCTCCGCTGCGCGCACTGCGGCAAGAAGTACATGGACAAGAACAAGCTGCGGTACTTACTACCCACGCCTACCTACTGTGCGCTCTGCCCCAACACGTACTCGTGCCGGGGCACGCTGCAGCAGCACATGCGCTACGCGCACGGCGACCACCCGCTCCGCTGCGCGCACTGCGGCAAGAAGTACATGGACAAGAACAAGCTGCGGTATGTACCCACGCCTACCTACTGTGCGCTCTGCCCCAACACGTACTCGTGCCGGGGCACGCTGCAGCAGCACATGCGCTACGCGCACGGCGACCACCCGCTCCGCTGCGCGCACTGCGGCAAGAAGTACATGGACAAGAACAAGCTGCGGTACTTACTACCCACGCCTACCTACTGTGCGCTCTGCCCCAACACGTACTCGTGCCGGGGCACGCTGCAGCAGCACATGCGCTACGCGCACGGCGACCACCCGCTCCGCTGCGCGCACTGCGGCAAGAAGTACATGGACAAGAACAAGCTGCGGTACTTACTACCCACGCCTACCTACTGTGCGCTCTGCCCCAACACGTACTCGTGCCGGGGCACGCTGCAGCAGCACATGCGCTACGCGCACGGCGACCACCCGCTCCGCTGCGCGCACTGCGGCAAGAAGTACATGGACAAGAACAAGCTGCGGTATGTACCCACGCCTACCTACTGTGCGCTCTGCCCCAACACGTACTCGTGCCGGGGCACGCTGCAGCAGCACATGCGCTACGCGCACGGCGACCACCCGCTCCGCTGCGCGCACTGCGGCAAGAAGTACATGGACAAGAACAAGCTGCGGTACTTACTACCCACGCCTACCTACTGTGCGCTCTGCCCCAACACGTACTCGTGCCGGGGCACGCTGCAGCAGCACATGCGCTACGCGCACGGCGACCACCCGCTCCGCTGCGCGCAACGCGGCAAGAAGTACATGGACAAGAATAAGCTGCGGTATGTACCCACGCCTACCTACTGTGCGCTCTGCCCCAACACGTACTCGTGCCGGGGCACGCTGCAGCAGCACATGCGCTACGCGCACGGCGACCACCCGCTCCGCTGCGCGCACTGCGGCAAGAAGTACATGGACAAGAACAAGCTGCGGTACTTACTACCCACGCCTACCTACTGTGCGCTCTGCCCCAACACGTACTCGTGCCGGGGCACGCTGCAGCAGCACATGCGCTACGCGCACGGCGACCACCCGCTCCGCTGCGCGCACTGCGGCAAGAAGTACATGGACAAGAACAAGCTGCGGTATGTACCCACGCCTACCTACTGTGCGCTCTGCCCCAACACGTACCCGTGCCGGGGCACGCTGCAGCAGCACATGCGCTACGCGCACGGCGACCACCCGCTCCGCTGCGCGCACTGCGGCAAGAAGTACATGGACAAGAACAAGCTGCGGTACTTACTACCCACGCCTACCTACTGTGCGCTCTGCCCCAACACGTACTCGTGCCGGGGCACGCTGCAGCAGCACATGCGCTACGCGCACGGCGACCACCCGCTCCGCTGCGCGCACTGCGGCAAGAAGTACATGGACAAGAACAAGCTGCGGTGGCACATGGCGGAGCACACGGGAGAGAAGAGCTTCCAGTGCGCCGTGTGCGCCGCGTACTTCAAGCAGGCCAGCACGCTGGCGTACCACGTGCGCGCGCGCCACACCCTCGAGCGGCCGCACCCCTGCGACCTCTGCCCGCACGCCTTCATCACCTCGTTCCGCCTCACCGAACACAAGCGGCGCCACCACGGCGCGCCCGCCCCGCACTGCGCCGCGTGTCGCGTGCGCTTCACCACGCGCGCGCGCCTCCACAAGCACATGCGCAAGTATCACGCGGCCGACCTCGCCCTCTCCGAGCCAGCGCTGCCGGCCGCGGCCCGCCCTACAGAGACCCACTAG
Protein Sequence
LCFGSAHAGQLFLAEEVELERRPYCADTVRLADMLAVLTGTPNVPATAFSRATGEVPSHVSGTVRARGRHLGRRGSQSRQRAGPEVNAGYERIAASERPGGAQKNAASSPSDSVGRGVNRAGKLIIIGTPGAVFKAVGQGVADRTDFPVCGRERCRSVTRVVGGCGPRYSRGAQAQRAEAGRRGMVPRLGQSGQARESSLVDANEHAVRIMCAVHGHVRRASCTGSSESPDSEGLGQLPAERGEAAAPVEDETGLPEGVCLACAAAAIDAYIFLQFCRYSASTWRDLRRTLMRAAASVAPDTDTKSLFVFVESGCTSVAADARPAPPAGEPRRLLRRARSLRARERRRALRERARSFQCAGCGKTFATASALSRHTATHERRLACTHCAKAFHSRSVLNMHVTRVHGDKSLPCPLCTKLFPSRPLLTAHIKEIHTYADCKHCGKTYRPKANGARRRGGEPAVRCGEVVREGSLEATNEILQLCAKDVRHSLRKHERSHGPRVPCDTCPGMFRSAEILRAHSARCPGAGAARPPARVPCALCPNTYSSRGTLQQHMRYAHGDHPLRCAHCGKKYMDKNKLRYVPTPTYCALCPNTYSCRGTLQQHMRYAHGDHPLRCAHCGKKYMDKNKLRYVPTPTYCALCPNTYSCRGTLQQHMRYAHGDHPLRCAHCGKKYMDKNKLRYLLPTPTYCALCPNTYSCRGTLQQHMRYAHGDHPLRCAHCGKKYMDKNKLRYVPTPTYCALCPNTYSCRGTLQQHMRYAHGDHPLRCAHCGKKYMDKNKLRYVPTPTYCALCPNTYSYRGTLQQHMRYAHGDHPLRCAHCGKKYMDKNKLRYLLPTPTYCALCPNTYSCRGTLQQHMRYAHGDHPLRCAHCGKKYMDKNKLRYVPTPTYCALCPNTYSCRGTLQQHMRYAHGDHPLRCAHCGKKYMDKNKLRYVPTPTYCALCPNTYSCRGTLQQHMRYAHGDHPLRCAHCGKKYMDKNKLRYLLPTPTYCALCPNTYSCRGTLQQHMRYAHGDHPLRCAHCGKKYMDKNKLRYVPTPTYCALCPNTYSCRGTLQQHMRYAHGDHPLRCAHCGKKYMDKNKLRYLLPTPTYCALCPNTYSCRGTLQQHMRYAHGDHPLRCAHCGKKYMDKNKLRYLLPTPTYCALCPNTYSCRGTLQQHMRYAHGDHPLRCAHCGKKYMDKNKLRYVPTPTYCALCPNTYSCRGTLQQHMRYAHGDHPLRCAHCGKKYMDKNKLRYLLPTPTYCALCPNTYSCRGTLQQHMRYAHGDHPLRCAQRGKKYMDKNKLRYVPTPTYCALCPNTYSCRGTLQQHMRYAHGDHPLRCAHCGKKYMDKNKLRYLLPTPTYCALCPNTYSCRGTLQQHMRYAHGDHPLRCAHCGKKYMDKNKLRYVPTPTYCALCPNTYPCRGTLQQHMRYAHGDHPLRCAHCGKKYMDKNKLRYLLPTPTYCALCPNTYSCRGTLQQHMRYAHGDHPLRCAHCGKKYMDKNKLRWHMAEHTGEKSFQCAVCAAYFKQASTLAYHVRARHTLERPHPCDLCPHAFITSFRLTEHKRRHHGAPAPHCAACRVRFTTRARLHKHMRKYHAADLALSEPALPAAARPTETH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-