Basic Information

Insect: Nematopogon swammerdamellus
Gene Symbol: -
Assembly: GCA_946902865.1
Location: CAMPPV010001079.1:247251-256261[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 8.5e-06 0.00064 20.9 0.5 2 23 325 346 324 346 0.96

2 11 3e-05 0.0023 19.2 1.9 1 23 352 375 352 375 0.96

3 11 0.014 1.1 10.8 2.3 1 23 385 407 385 407 0.97

4 11 5.1e-05 0.0038 18.5 3.5 1 23 413 435 413 436 0.95

5 11 0.001 0.076 14.4 1.5 1 23 441 463 441 463 0.97

6 11 0.00061 0.046 15.1 2.1 2 20 470 488 469 492 0.93

7 11 1.7 1.3e+02 4.2 5.6 1 23 498 518 498 518 0.94

8 11 1.4e-05 0.0011 20.2 0.3 1 23 524 546 524 546 0.98

9 11 7.4e-05 0.0056 18.0 1.3 1 23 552 574 552 574 0.98

10 11 0.00032 0.024 15.9 0.6 1 23 580 603 580 603 0.94

11 11 0.0066 0.5 11.8 0.1 1 21 609 629 609 630 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	8.5e-06	0.00064	20.9	0.5	2	23	325	346	324	346	0.96
2	11	3e-05	0.0023	19.2	1.9	1	23	352	375	352	375	0.96
3	11	0.014	1.1	10.8	2.3	1	23	385	407	385	407	0.97
4	11	5.1e-05	0.0038	18.5	3.5	1	23	413	435	413	436	0.95
5	11	0.001	0.076	14.4	1.5	1	23	441	463	441	463	0.97
6	11	0.00061	0.046	15.1	2.1	2	20	470	488	469	492	0.93
7	11	1.7	1.3e+02	4.2	5.6	1	23	498	518	498	518	0.94
8	11	1.4e-05	0.0011	20.2	0.3	1	23	524	546	524	546	0.98
9	11	7.4e-05	0.0056	18.0	1.3	1	23	552	574	552	574	0.98
10	11	0.00032	0.024	15.9	0.6	1	23	580	603	580	603	0.94
11	11	0.0066	0.5	11.8	0.1	1	21	609	629	609	630	0.93

Sequence Information

Coding Sequence: ATGATGAACATCGGCCGACGCAGCCTCGGGGCGCCCGGTGAGGACTCGGCTCTCGCACGCACGCGGCCGCTCCACAGACCGGACAAGATGGCCAGCGCTAGAAGCAGACTCAAGGAATCTAAGCCGGCAAAAAATCAAAGTCGCGGAAGAGTCACGAAGAATGAAAGAAAGAGGAAGAACAATCCAGCTCTTAAACGGAACAGCTCCAAACAAACTAAGGCGGAAACTGTATCACAGGGCCTCAGTAGATATCGAATTCCGAAAAAAATTAACGGGGATCAAACTACTGCCAGCTCTCTACCTAGAGAGAGGAATGTTACCAAACGCAAAGAAGCTGCAAAAAGTATAGACTGTTCGAGCGACAAAGAAATAGCGAAGGCCAAAGAGAATTTAAAGAATAAGTATGAAAACAATAAAGAACTTTCAAACAATGAAAAGATTTCAAAGGGAAAAGAAGTTGCAAAAAGCAAAGGACTTACAAATGGCAAAAAACCTGAAAAAGTAAAGGAGAATAATATTCCTACAAAGGTTCAAAACAATCCAAAGAAATCCTCACCGAGGGTATCGCGCGAGGCGAGTGCGAGTGTCTCTACTGAGCGGCAGCACATTATGAAACTGGAGACGTCTCCCGAGTCCACGCCGGAGCCCTCCGGCAGTAACGGGATGCCACCGAAACGCTCCAGACGAAAGAATTCCGCTCTATCTGCCAGTTCAATGTCGGCGACTCCTCCGGTGCGGTCGGCGCGAGCGGGCTCTGACTACGCGACGGTGGAGGAGGACGGCAAGACGTGGACGGTGCCGAAGCCGGTGAGCCTCCGGCCGGAGCCCTTCGTGCTGCCGGTCAGCGTGGAGCAGCACAAGGTGCGCAAGATCGAGGACATGACGATCCTGAGGGAGATGCTGAAGCTGCACAAAATTCAGCTGAGCAACGGCGTCCAGATATCCGTGCCGCACACCTCGCACCAGCCCCTCGAGTGCGACTACTGCGGGCGCTCCTTCCGCGCCAAGCAGGACCTCCGCAAGCACATATTCATCCACCTCGACATCCGCCCGCACCCGTGCCCTCTCTGCGACAGCAGGTTCCGGCAGCGCGGCAACCTCAAGACTCACATGACGCGCATGCACGCGCAGGCGTTGCCCGCCCCGCAGCTCTTCATCTGTCACCACTGCGGCGCTCGCTTCTTCGTCAAGGAGGCCATCCGCTCGCACGTCCTCAAGCACGAACCGATCAAGCCGTACGCTTGCAAACACTGCAACAAACGATTCGTCCGCGACGTCCTACTCCGCGCGCACGTACGCAGCCACCACGGCTCGTGCCGCTTCTTCTGTTACCTCTGCAGCGCCTCGTACACCAAACGCAACTCGCTCAACGCGCACATAAAGACGCACCTCGGCATCCGAGATTTAATCTGCCATATATGCGGCAAGGGATTCACGCGACTCGAATCCATCCGGAAGCACATACTGTGTTTCCATCAGGACGTTAAGCGGTTCCAGTGTCCGATATGCTCGAAATGGCTGAAGGGGCACCTGCGAGAGCATATGAGGACGCACGTACACTCCAAGCCGTACGCCTGCCTAGAGTGCGGGCGGCGGTTCGCGCAGACTTCCCAACTGGCGGTGCATAAACGCTCGCACACCGGGATAAAACCTTACAACTGTCGCGTATGCAAACGCCCTTTCACCCACTCCAACGCTCTGCTCCTGCACATTCGTATCCACACGGGAGAGAAGCCATTCGAGTGCGCGATGTGTCCTCAGACGTTCTCGCAGCTCCCGCACATGAAAGCGCACATGTTCAACATCCACAACAAAAAGGAGGCGTACAAATGCGCGGATTGCGGTGAGTTCTTCAAGCTGCGCGCCACGCTGGACGAGCACAGGCTGGTGTGCATGCAGGCGGCTAACCAGCGGCTGCCGTGGATGCAGCAGCTGGCGCAGGCGCATGTCAAGGGAGAAGATATGCCCGTCATGAGCATCTCTAAGATGAGATTCCTGCTCGCCATTTTGCTGAGCACCATCGCCGACGAGGACCGCCTGAGAGTTCTCGGTTTCAACAAGCGTCTGATAGACGACCTGCTGATAGACTCGCTGGAGGCGACGGGACACTCGCCCTGCAAGGACACCGCGCTGCCGCCGGTGCGGCGGCTCCGCGAGAATATCCAGCTCTTCCTCGACTGGACCGTCCCGCCTGACATCATGAGCCGCTTCCGCAAGCAGAACAAGACAACGGAGCAACTGTTGGAGGAACTGACGAGTTAA
Protein Sequence: MMNIGRRSLGAPGEDSALARTRPLHRPDKMASARSRLKESKPAKNQSRGRVTKNERKRKNNPALKRNSSKQTKAETVSQGLSRYRIPKKINGDQTTASSLPRERNVTKRKEAAKSIDCSSDKEIAKAKENLKNKYENNKELSNNEKISKGKEVAKSKGLTNGKKPEKVKENNIPTKVQNNPKKSSPRVSREASASVSTERQHIMKLETSPESTPEPSGSNGMPPKRSRRKNSALSASSMSATPPVRSARAGSDYATVEEDGKTWTVPKPVSLRPEPFVLPVSVEQHKVRKIEDMTILREMLKLHKIQLSNGVQISVPHTSHQPLECDYCGRSFRAKQDLRKHIFIHLDIRPHPCPLCDSRFRQRGNLKTHMTRMHAQALPAPQLFICHHCGARFFVKEAIRSHVLKHEPIKPYACKHCNKRFVRDVLLRAHVRSHHGSCRFFCYLCSASYTKRNSLNAHIKTHLGIRDLICHICGKGFTRLESIRKHILCFHQDVKRFQCPICSKWLKGHLREHMRTHVHSKPYACLECGRRFAQTSQLAVHKRSHTGIKPYNCRVCKRPFTHSNALLLHIRIHTGEKPFECAMCPQTFSQLPHMKAHMFNIHNKKEAYKCADCGEFFKLRATLDEHRLVCMQAANQRLPWMQQLAQAHVKGEDMPVMSISKMRFLLAILLSTIADEDRLRVLGFNKRLIDDLLIDSLEATGHSPCKDTALPPVRRLRENIQLFLDWTVPPDIMSRFRKQNKTTEQLLEELTS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -