Basic Information

Insect: Nematopogon swammerdamellus
Gene Symbol: -
Assembly: GCA_946902865.1
Location: CAMPPV010000338.1:198831-206345[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.0051 0.39 12.2 5.4 1 23 203 225 203 225 0.99

2 9 8.9e-06 0.00067 20.8 0.7 1 23 231 253 231 253 0.96

3 9 0.00038 0.029 15.7 1.1 1 23 259 282 259 282 0.97

4 9 1.2e-05 0.0009 20.4 0.2 1 21 288 308 288 309 0.96

5 9 0.5 38 5.9 0.0 2 20 324 342 324 344 0.94

6 9 2.8e-05 0.0021 19.3 0.7 1 23 369 392 369 392 0.98

7 9 7.9e-07 6e-05 24.1 0.1 1 23 398 420 398 420 0.98

8 9 8.4e-06 0.00064 20.9 0.9 1 23 426 449 426 449 0.98

9 9 0.0006 0.046 15.1 0.2 1 23 467 490 467 490 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.0051	0.39	12.2	5.4	1	23	203	225	203	225	0.99
2	9	8.9e-06	0.00067	20.8	0.7	1	23	231	253	231	253	0.96
3	9	0.00038	0.029	15.7	1.1	1	23	259	282	259	282	0.97
4	9	1.2e-05	0.0009	20.4	0.2	1	21	288	308	288	309	0.96
5	9	0.5	38	5.9	0.0	2	20	324	342	324	344	0.94
6	9	2.8e-05	0.0021	19.3	0.7	1	23	369	392	369	392	0.98
7	9	7.9e-07	6e-05	24.1	0.1	1	23	398	420	398	420	0.98
8	9	8.4e-06	0.00064	20.9	0.9	1	23	426	449	426	449	0.98
9	9	0.0006	0.046	15.1	0.2	1	23	467	490	467	490	0.98

Sequence Information

Coding Sequence: ATGTGGGACGTGCGCGTGTGCGTCGCGTGCCTCGCTACCGACGTGAGGATGTACAGCATGAGCGCCAGCAGTCTGCTGCAGCCCTACCAACTGCTCGCCGGCGTCCAGTTTGGCGATCATAACGATCATCTACCTAGACAGTTGTGCTGGGAGTGTGCGGCACTCGTGAACAAGTTCAACTTGTTCAGACACAAGTGTGAGAGATCCTATCTACTGCTGCAGGACATCTACAGCCAATATGATGAGATAACTGAAAATAGACTAAAACTCATCGACAGAAAGCAAAACGGGCTAACATCCGAGATCGACTTTTCTGAAAGTTTCTCCTACGTCATAGAACAGAGAACCGTGCGCAAGAAACGACGGAATAAAAGAATCCCAACTGCTGCGGCCGATTCCGACAGCGCGACGACCGATGAACTGTCGGAGAGTCCGCCTATCAAGAGCGAGCTTGGTGCGGTGAAGGAGGAGATCGGAGAAGTGAAGACTGAGTGTGAGGGAGATGTGGATACTTACAGTAATGCAGAAGTTGATACTGATGTTGAGCAAATCAAGTACGCATCGAGCCTGCAACAGCACAGCAGCGTTCACACCGGTGTGCCCAACTACAAGTGCAAGTTCTGTCCCAAGAGCTTCGTGTACCGCCGCTCGTGCTGGAGCCACATGACCACGCACGCCAGCACCAGGGCTTACATATGCGACGTATGCGGCAAGAGGTTTAAGACGCTAAAGTACCTGAAAGACCACACCCTAGCGCACCGTGAGAGCCGTGACTTTACCTGCAAACTGTGCCCCAAGAACTACACGACGTACAAGGCACTTTGGCTGCACGCGAAGAAGTCACACGCGAAGCACAGGCCCTACGTGTGTGATATTTGTAACATGGGTTTCAGCCTTAAGTCTGAACTGACGAAGCATATGATGAAGAGAAAAAACCCCCATAAAGCCGGCGGCGGTCTGACGAATAGGAAGTGTGCGGTGTGCGACGTGGAGTACCCGTCCCGCGGGGAGTTCCTCGCGCACCGCGCCGCCTGCCGCGTCACCTCGCAGGCTGCCAGTGACGTGCAGAGCGCACTAACTAACAAGGAAGTGAAGACACGCACATACAAGTGCAAGATATGCGCTCGCAACTTCACTCAGTATTGGGCGCTGACGCTACACATCAACACGACGCACTCGGAGGATCGGCCGTACGTGTGTGAGGTGTGTGGGAAGGGGTTCAAGGTGAAGGACGGACTTAGGAGACATTTGCTGGTACACACAGGCGAGAAACAGTTCAAGTGCCCCATGTGCGATAAGGCATTCACGACCAACAACTGGAAGCAACAGCACGTCCGGCGCGTCCACTTCAACGAACACATTCCGTACAAGCCGCGCGTGCACACGGGGGAGAAACAGTTCAAGTGCGCCCTATGCGAGAAGGCGTTCGCGTCCAACGCGTGGCGACAGCAGCACGTGCGGCGCGTCCACTACAACGAGCACGTTCCGTACAAGCCTCGCGTGCGCGCTAGGAGACGCGCCGTCGAGAATGATCGGGAGGGCATCCCGCAGGCTGTAACGTTGACCTGA
Protein Sequence: MWDVRVCVACLATDVRMYSMSASSLLQPYQLLAGVQFGDHNDHLPRQLCWECAALVNKFNLFRHKCERSYLLLQDIYSQYDEITENRLKLIDRKQNGLTSEIDFSESFSYVIEQRTVRKKRRNKRIPTAAADSDSATTDELSESPPIKSELGAVKEEIGEVKTECEGDVDTYSNAEVDTDVEQIKYASSLQQHSSVHTGVPNYKCKFCPKSFVYRRSCWSHMTTHASTRAYICDVCGKRFKTLKYLKDHTLAHRESRDFTCKLCPKNYTTYKALWLHAKKSHAKHRPYVCDICNMGFSLKSELTKHMMKRKNPHKAGGGLTNRKCAVCDVEYPSRGEFLAHRAACRVTSQAASDVQSALTNKEVKTRTYKCKICARNFTQYWALTLHINTTHSEDRPYVCEVCGKGFKVKDGLRRHLLVHTGEKQFKCPMCDKAFTTNNWKQQHVRRVHFNEHIPYKPRVHTGEKQFKCALCEKAFASNAWRQQHVRRVHYNEHVPYKPRVRARRRAVENDREGIPQAVTLT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -