Nswa027024.1
Basic Information
- Insect
- Nematopogon swammerdamellus
- Gene Symbol
- Zfa_1
- Assembly
- GCA_946902865.1
- Location
- CAMPPV010001195.1:23643-46192[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 38 0.74 56 5.4 1.1 1 23 83 106 83 106 0.92 2 38 0.58 44 5.7 1.3 1 23 127 150 127 150 0.92 3 38 0.71 54 5.4 0.6 1 19 171 189 171 192 0.95 4 38 0.74 56 5.4 1.1 1 23 215 238 215 238 0.92 5 38 2.9 2.2e+02 3.5 1.7 1 23 259 282 259 282 0.92 6 38 0.74 56 5.4 1.1 1 23 307 330 307 330 0.92 7 38 0.74 56 5.4 1.1 1 23 351 374 351 374 0.92 8 38 0.27 21 6.7 0.1 1 23 381 403 381 403 0.96 9 38 1.9 1.5e+02 4.1 1.5 2 20 408 426 406 428 0.88 10 38 0.11 8 8.0 0.2 1 23 432 454 432 454 0.96 11 38 0.25 19 6.8 0.5 1 20 458 477 458 479 0.92 12 38 0.11 8 8.0 0.2 1 23 483 505 483 505 0.96 13 38 0.25 19 6.8 0.5 1 20 509 528 509 530 0.92 14 38 0.11 8 8.0 0.2 1 23 534 556 534 556 0.96 15 38 0.27 21 6.7 0.1 1 23 561 583 561 583 0.96 16 38 1.9 1.5e+02 4.1 1.5 2 20 588 606 586 608 0.88 17 38 0.11 8 8.0 0.2 1 23 612 634 612 634 0.96 18 38 1.9 1.5e+02 4.1 1.5 2 20 639 657 637 659 0.88 19 38 0.11 8 8.0 0.2 1 23 663 685 663 685 0.96 20 38 1.9 1.5e+02 4.1 1.5 2 20 690 708 688 710 0.88 21 38 0.49 37 5.9 0.1 1 23 714 736 714 736 0.96 22 38 1.9 1.5e+02 4.1 1.5 2 20 741 759 739 761 0.88 23 38 0.11 8 8.0 0.2 1 23 765 787 765 787 0.96 24 38 0.25 19 6.8 0.5 1 20 791 810 791 812 0.92 25 38 0.49 37 5.9 0.1 1 23 816 838 816 838 0.96 26 38 0.25 19 6.8 0.5 1 20 842 861 842 863 0.92 27 38 0.49 37 5.9 0.1 1 23 867 889 867 889 0.96 28 38 0.25 19 6.8 0.5 1 20 893 912 893 914 0.92 29 38 0.49 37 5.9 0.1 1 23 918 940 918 940 0.96 30 38 0.13 9.9 7.7 1.3 1 23 944 967 944 967 0.93 31 38 0.004 0.3 12.5 1.0 1 23 972 995 972 995 0.90 32 38 7.6e-05 0.0057 17.9 1.9 2 23 1000 1021 999 1021 0.96 33 38 0.00012 0.009 17.3 0.4 3 23 1029 1049 1028 1049 0.97 34 38 3.7 2.8e+02 3.2 0.6 3 22 1058 1077 1056 1081 0.87 35 38 0.096 7.3 8.2 1.8 3 23 1091 1112 1089 1112 0.96 36 38 5.2e-05 0.0039 18.4 1.8 1 23 1118 1141 1118 1141 0.95 37 38 9.3e-05 0.0071 17.6 0.1 3 23 1154 1174 1153 1174 0.98 38 38 0.01 0.78 11.2 0.5 1 23 1180 1203 1180 1203 0.96
Sequence Information
- Coding Sequence
- ATGTTACAAAAGGTCTGGGAGCATCGAGGCAGTCTCGCTGTGTGCTGGGAGTGCCGGGCTCTGCTGCGACGCACCGCTGACTTCAGGGAAAGAGCTCTCCGTGCGCGTCTTCTGCTTATGCAGTTTCTCAGTTCGGCGGCAGTGAAGCAGTGGTCTCAGCGGTACAGGAGCGTGCCGGTGACTGAAGAGCAGCTGCAGCGCTGGCGCCGCGACGACGCGCGCAGCGAGCGCTACCTCCGCCTGCAGCACAAGTGCACCAGCTGCCTCGTGGCGTTCAACTTCGCCGATCAGCTGCTGCAGCACAACGCGAGGAATCACGACGAGCTGCAGCGCTGGCGCCGCGACGACGCGCGCAGCGAGCGCTACCTCCGCCTGCAGCACAAGTGCACCAGCTGCCTCCTGGCGTTCAACTTCGCCGATCAGCTGCTGCAGCACAACGCGAGGAATCACGACGAGCTGAAGCGCTGGCGGCGCGACGACGCGCGCAACGAGCGCTACCTCCGTCTGCTGCACAAGTGCACCAGCTGCCTCGTGACGTTCAACTTCGCAGATCAGCTGCTGCAGCACAACGCGAGGAATAATGACGAGCTGCAGCGCTGGCGGCGCGACGACGCGCGCAGCGAGCGCTACCTCCGTCTGCAGCACAAGTGCACCAGCTGCCTCGTGGCGTTCAACTTCGCAGATCAGCTGCTGCAGCACAACGCGAGGAATCACGACGAGCTGCAGCGCTGGCGGCGCGACGACGCGCACAGCGAGCGCTACCTCTGCCTGCAGCACAAGTGCACCAGCTGCCTCGTGGCGTTCAACTTCACAGATCAGCTACTGCAGCACAACGCGAGGAATCACGACGAGATGAGAGGGTGCCTGCAGCGCTGGCGGCGCGACGACGCGCGCAACGAGCGCTACCTCCGTCTGCAGCACAAGTGCACCAGCTGCCTCGTGGCGTTCAACTTCGCAGATCAGCTGCTGCAGCACAACGCGAGGAATCATGACGAGCTGCAGCGCTGGCGGCGCGACGACGCGAGCAGCGAGCGCTACCTCCCTCTGCAGCACAAGTGCACCAGCTGCCTCGTGGCGTTCAACTTCGCCGATCAGCTGCTGCAGCACAACGCGAGGAATCACGACGAGGCGCTGGGAGAGTTCTCGTGCGACATCTGCGCGTGCCGCTTCCCCGCGGAGGCGGAGCTGCTCGCGCACAGGGAGCTTCACGTCACGCGCTGCGAGTGCCTCCACTGCGACTATACGTCCAGAGACAAGAAGGCCATAGACAAACACTATGAGGCGCTGGGGGAGTTCTCGTGCGACGTCTGCACGTGCCGCTTCCCCGCGGAGGCGGAGCTGCTCGCGCACAGGGAGCTTCACGTCACGCGCTACGAGTGCCTCCACTGCGACTATACGTCCAGAGACAAGAAGGCCATAGACAAACACTATGAGGCGCTGGGGGAGTTCTCGTGCGACGTCTGCACGTGCCGCTTCCCCGCGGAGGCGGAGCTGCTCGCGCACAGGGAGCTTCACGTCACGCGCTACGAGTGCCTCCACTGCGACTATACGTCCAGAGACAAGAAGGCCATAGACAAACACTATGAGGCGCTGGGGGAGTTCTCGTGCGACGTCTGCACGTGCCGCTTCCCCGCGGAGGCGGAGCTGCTCGCGCACAGGGAGCTTCACGCGCTGGGGGAGTTCTCGTGCGACATCTGCGCGTGCCGCTTCCCCGCGGAGGCGGAGCTGCTCGCGCACAGGGAGCTTCACGTCACGCGCTGCGAGTGCCTCCACTGCGACTATACGTCCAGAGACAAGAAGGCCATAGACAAACACTATGAGGCGCTGGGGGAGTTCTCGTGCGACGTCTGCACGTGCCGCTTCCCCGCGGAGGCGGAGCTGCTCGCGCACAGGGAGCTTCACGTCACGCGCTGCGAGTGCCTCCACTGCGACTATACGTCCAGAGACAAGAAGGCCATAGACAAACACTATGAGGCGCTGGGGGAGTTCTCGTGCGACGTCTGCACGTGCCGCTTCCCCGCGGAGGCGGAGCTGCTCGCGCACAGGGAGCTTCACGTCACGCGCTGCGAGTGCCTCCACTGCGACTATACGTCCAGAGACAAGAAGGCCATAGACAAACACTATGAGGCGCTGGGGGAGTTCTCGTGCGACGTCTGCGCGTGCCGCTTCCCCGCGGAGGCGGAGCTGCTCGCGCACAGGGAGCTTCACGTCACGCGCTGCGAGTGCCTCCACTGCGACTATACGTCCAGAGACAAGAAGGCCATAGACAAACACTATGAGGCGCTGGGAGAGTTCTCGTGCGACGTCTGCACGTGCCGCTTCCCCGCGGAGGCGGAGCTGCTCGCGCACAGGGAGCTTCACGTCACGCGCTACGAGTGCCTCCACTGCGACTATACGTCCAGAGACAAGAAGGCCATAGACAAACACTATGAGGCGCTGGGAGAGTTCTCGTGCGACGTCTGCGCGTGCCGCTTCCCCGCGGAGGCGGAGCTGCTCGCGCACAGGGAGCTTCACGTCACGTGCTACGAGTGCCTCCACTGCGACTATACGTCCAGAGACAAGAAGGCCATAGACAAACACTATGAGGCGCTGGGAGAGTTCTCGTGCGACGTCTGCGCGTGCCGCTTCCCCGCGGAGGCGGAGCTGCTCGCGCACAGGGAGCTTCACGTCACGTGCTACGAGTGCCTCCACTGCGACTATACGTCCAGAGACAAGAAGGCCATAGACAAACACTATGAGGCGCTGGGGGAGTTCTCGTGCGACGTCTGCGCGTGCCGCTTCCCCGCGGAGGCGGAGCTGCTCGCGCACAGGGAGCTTCACGTCACGCGCTACGAGTGCCTCCACTGCGACTATACGTCCAGAGACAAGAAGGCCATAGACAAACACTACGTGATGGAGCACGGCTCCGCTACGTACAACTGCGACCAGTGCGATGCCGTGTATAAGACGACATCGCAACTGCGCTACCACCGGGACGACAAGCACGGGAAGCGTTGGCCTTGCAAGCACTGCGGCAAGACTTTCCGCCTCCGCAACAACATGTACTCGCACATGCTAATTCACAAGCAGCTACCGGAGGCGCCGTGCGCGGTGTGCGGCAAGGTGATGCGCAACAAGTACTCGCTCAAGATCCACATGAAGCGGCACGAACAGAGCGGCAGGTCCTGGTACTGCCGCCCGTGCGACGCTCACTTCGCGCAGGAGAGCGGATACAAGAGCCATCTCACCACCAGCATGAAACATCTCACGCCGGATAAGCTCAAGTACGGGTGCGAGCAGTGCGGCCGCAGGTTCTTCACGGAGAAGCGGCGCAGGCGGCACTACAACAGCGTGCACCTGAAGAGGAGCGAGTTCCAGTGCGACCAGTGCAGCAAGTCGTATTCAACAAAGATGTCATTGAAGAACCACATAGCGCAGAAACACGAGAAGAACTACCAGGGCCCGCCGCGCGACAAGATATGTGATATCTGCGGGAAGGGATTTGCCATCAGCGGGGTGCTCAAGTCCCACATGAGAACACACACGGGGGAGCGGCCGTATCAGTGCGAACTCTGTCCATCCACGTTCGGCCATCAGGCGGCGCTCTACACACACAACCGGTTGGTGCATCTCAAGATGAAGCGCAAGAGAGCCGGCAAGAAAAATAGCGAAGAAGCCGGCGAGGAGCAGAAGTCAAGCTGGGAGCCCGCGCCCTTCTCCTATTGA
- Protein Sequence
- MLQKVWEHRGSLAVCWECRALLRRTADFRERALRARLLLMQFLSSAAVKQWSQRYRSVPVTEEQLQRWRRDDARSERYLRLQHKCTSCLVAFNFADQLLQHNARNHDELQRWRRDDARSERYLRLQHKCTSCLLAFNFADQLLQHNARNHDELKRWRRDDARNERYLRLLHKCTSCLVTFNFADQLLQHNARNNDELQRWRRDDARSERYLRLQHKCTSCLVAFNFADQLLQHNARNHDELQRWRRDDAHSERYLCLQHKCTSCLVAFNFTDQLLQHNARNHDEMRGCLQRWRRDDARNERYLRLQHKCTSCLVAFNFADQLLQHNARNHDELQRWRRDDASSERYLPLQHKCTSCLVAFNFADQLLQHNARNHDEALGEFSCDICACRFPAEAELLAHRELHVTRCECLHCDYTSRDKKAIDKHYEALGEFSCDVCTCRFPAEAELLAHRELHVTRYECLHCDYTSRDKKAIDKHYEALGEFSCDVCTCRFPAEAELLAHRELHVTRYECLHCDYTSRDKKAIDKHYEALGEFSCDVCTCRFPAEAELLAHRELHALGEFSCDICACRFPAEAELLAHRELHVTRCECLHCDYTSRDKKAIDKHYEALGEFSCDVCTCRFPAEAELLAHRELHVTRCECLHCDYTSRDKKAIDKHYEALGEFSCDVCTCRFPAEAELLAHRELHVTRCECLHCDYTSRDKKAIDKHYEALGEFSCDVCACRFPAEAELLAHRELHVTRCECLHCDYTSRDKKAIDKHYEALGEFSCDVCTCRFPAEAELLAHRELHVTRYECLHCDYTSRDKKAIDKHYEALGEFSCDVCACRFPAEAELLAHRELHVTCYECLHCDYTSRDKKAIDKHYEALGEFSCDVCACRFPAEAELLAHRELHVTCYECLHCDYTSRDKKAIDKHYEALGEFSCDVCACRFPAEAELLAHRELHVTRYECLHCDYTSRDKKAIDKHYVMEHGSATYNCDQCDAVYKTTSQLRYHRDDKHGKRWPCKHCGKTFRLRNNMYSHMLIHKQLPEAPCAVCGKVMRNKYSLKIHMKRHEQSGRSWYCRPCDAHFAQESGYKSHLTTSMKHLTPDKLKYGCEQCGRRFFTEKRRRRHYNSVHLKRSEFQCDQCSKSYSTKMSLKNHIAQKHEKNYQGPPRDKICDICGKGFAISGVLKSHMRTHTGERPYQCELCPSTFGHQAALYTHNRLVHLKMKRKRAGKKNSEEAGEEQKSSWEPAPFSY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -