Nswa003919.1
Basic Information
- Insect
- Nematopogon swammerdamellus
- Gene Symbol
- -
- Assembly
- GCA_946902865.1
- Location
- CAMPPV010000111.1:443646-474082[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 33 0.0022 0.16 13.3 4.5 1 23 243 265 243 265 0.98 2 33 2.2 1.6e+02 3.9 1.0 1 23 299 321 299 321 0.95 3 33 0.014 1.1 10.8 5.4 1 23 365 387 365 387 0.99 4 33 0.0089 0.68 11.4 0.7 2 23 396 418 395 418 0.95 5 33 4.7 3.6e+02 2.8 0.9 1 23 422 444 422 444 0.93 6 33 1.4 1.1e+02 4.5 1.8 1 23 496 518 496 518 0.98 7 33 0.0094 0.71 11.3 4.7 1 23 525 548 525 548 0.93 8 33 9.1 6.9e+02 1.9 1.9 1 22 598 619 598 621 0.71 9 33 0.03 2.3 9.7 1.7 1 23 625 648 625 648 0.96 10 33 0.03 2.3 9.7 1.7 1 23 654 677 654 677 0.96 11 33 0.37 28 6.3 0.6 6 23 688 706 687 706 0.97 12 33 0.27 20 6.8 0.1 2 21 723 742 723 747 0.91 13 33 0.073 5.5 8.5 1.1 3 23 758 779 758 779 0.94 14 33 1.6 1.2e+02 4.3 0.1 3 23 837 858 836 858 0.95 15 33 0.13 9.9 7.7 5.0 1 23 871 893 871 893 0.95 16 33 2.7e-05 0.002 19.3 0.6 1 23 899 921 899 921 0.97 17 33 5.8e-06 0.00044 21.4 1.0 1 22 927 948 927 948 0.95 18 33 5.1 3.9e+02 2.7 0.1 8 23 951 966 947 966 0.88 19 33 9e-06 0.00068 20.8 2.4 1 22 972 993 972 993 0.95 20 33 5.8e-06 0.00044 21.4 1.0 1 22 1017 1038 1017 1038 0.95 21 33 5.1 3.9e+02 2.7 0.1 8 23 1041 1056 1037 1056 0.88 22 33 5.8e-06 0.00044 21.4 1.0 1 22 1062 1083 1062 1083 0.95 23 33 5.1 3.9e+02 2.7 0.1 8 23 1086 1101 1082 1101 0.88 24 33 2.4e-05 0.0018 19.5 0.9 1 22 1107 1128 1107 1128 0.95 25 33 5.1 3.9e+02 2.7 0.1 8 23 1131 1146 1127 1146 0.88 26 33 0.17 13 7.4 1.6 1 18 1152 1169 1152 1169 0.90 27 33 5 3.8e+02 2.8 0.1 8 23 1176 1191 1172 1191 0.88 28 33 0.3 23 6.6 0.8 1 16 1197 1212 1197 1214 0.85 29 33 5 3.8e+02 2.8 0.1 8 23 1221 1236 1217 1236 0.88 30 33 0.81 62 5.2 0.8 1 18 1242 1259 1242 1259 0.90 31 33 5 3.8e+02 2.8 0.1 8 23 1266 1281 1262 1281 0.88 32 33 0.36 28 6.3 3.7 1 22 1287 1308 1287 1309 0.84 33 33 0.0018 0.14 13.6 0.5 1 23 1315 1338 1315 1338 0.96
Sequence Information
- Coding Sequence
- ATGTGGGATGTGCGAGTGTGCGTGGCGTGTCTCGCCACCGACGTAAGGATGTACAGCATGAGCGCTAGCAGTCTGCTGCAGCCCTACCAACTGCTCGCCGGCGTCCAGGACTGGGAGGGGCTGCCGCAGACAATGTGCTACGAGTGTGGAGCGCTGCTCGGCAAGTTCCGAGTTTTCCGCGAGCGTTGTCATCGCGCCTACGTCACACTACGCGACATGGTCATGGACCACGATGAGATAACTCTAAAGAGGGTCCAACAGATTGACCGGAGGAGTATAAAGCCGAGCCTCTGCTCGCCGCTCGCACGCTCGCCCGTGTACAGCACCAGCGTCGGCCCGGAGCCGGCCGAGCGTCGCCGCACACGCAGGAGGCACAAGAGGAAGGCCGCGAGCGGGAAGAGAGGAGGCGGCGGCGACGTGAGGCCGAATGTGGAGTACTTCGTGGAGATAGATAAAGATGAGGTGACCAGCATTAAATCAGAGATCGAGTTTGCGGACGACTTGCCCGAGGTGACGCCGAGCGACTCCGACTCCGACCTCCCCCTGAGGCGGCCGTCGGAGCGCGCGCGCGGCCCCGGCGGCGGCGAGCGAGCCGCGCCGGAGGTAAAGCGGGAGCCCGCGGACTGCGGCGAAGCTTGCGGTTACCTTGAAGAGAACGTCACTAAGGAGGAGCTAATAGAACACGTCAGGATGAGGCAACACTCGACCGCCTACAAGAAGGCGCGATACAAGTGTACGCTGTGTTACAAGTCCTTCCCGCGCCGGGACAGATACCACAACCATATGCTGCTTCACGACCCGGTTAGCGGCGAGCACGCATGCGAGGTGTGCCTCGTGCGAATGTGTACGGAGGAGTCGCTCGGCGACCACGTGAAAAAGAACCACAGCAAGAAGTACACGTGCAGCAGTTGCGGACACGTCAGCTTCAACCAGAACACGGCCGCGATGCACGCCAAGAGCCACCAGACGCTATCCTTGAGGAACACAACGCATCTGGACAAACTTCAGACAACTGCAGTTAAACTTACCACCGAGGAGCAAATGCAAGTTTTCCAGGCAAAAGGCACTTCTGAAGAGTTTGTACAGGCCAAGTTTAAATGCAAGCTCTGTTTTCACATAAGCAGTAGGAAAGAGGGTCTACAGAGGCACAAGCGAAAGCATGATCCGTTGATATCGGGCAAGGTGGAATGCGACGTGTGCCGGCTGAGGTTCAAGACCCGGCAAGCGATGACGCAGCATCAGATACGGAGTCACATGAAGCGTTACACCTGCAACACGTGTAGCGATGTCTGCTACAGCCTGAGTGAAGCGAAGGCGCACCGCGTGTGGCACGAGCGCGGCTGCAAGCCCGGCGGCCGGCGGCGCGCGGTCAAGCGGGAACCCCGCGACCAGGTCGGCGAGCTGCGCGAGACCATGAGCATCGAGGGACTCACGCAGGCGGAGCAGGTGCGTCACTTCATGGAGACGCGCAACTCTGACGCGCCGTTCAAGTGCGACGTCTGCCTGAAGGGGCACTACGACGCGAACGCTTTCCGCAACCATCAGCTCAAGCACGAGCCGGTATCCGGCAAGTTCCAGTGCGACATCTGCAAGTACCGCTACAAGAAGCGCTACCACATACAGCGGCACATCGTCTACTTCCACAAGAACCAGTACCGCTGCAAGATCTGCAACCAGCTCTTCCACAACCGGTGCGTGAGCGTTCTCTTCCTCTCCGCGTCCGCCTCGCTGGCTCGCTGCTGCAGTCCGATGGCCGCCACGAAGCATCACCTCTGGCACAAGGGGAAGGTTTACGAGTGCAAACACTGCGGCCTACAGTCCAATATTCTGTCGACGCACCTGACACACCTGCGGCTGAAGCACCCCTCGGAGCACGTGTGCGGCGCGTGCGGCGAGGCGTTCGTCAGCAAGCTCGGCCTGCACCAGCACCACCGCATCACGCACGCCCACCCCTCGGAGCACGTGTGCGGCGCGTGCGGCGAGGCGTTCGTCAGCAAGCTCGGCCTGCACCAGCACCACCGCATCACGCACGCCCACCCCTCGGAGCACGTGGGCGGCGCGTGCGGCGAGGCGTTCGTCAGCAAGCTCGGCCTGCACCAGCACCACCGCATCACGCACGCCCTGAAGGAGGACTCGACGCCGACGGCAGCGGACGCGGCCGGTCCGCGCTGCGCCGCGTGCGACATACAGTTCACGTCGCGACAGGCGTGGACGAGGCACATACTCATCTCGCCTAAACACCAGCACGAGCGGTCTACTATATCGAACGGATGCGGCTCTTGCGGCGAGACGTTCGCCACGGCGGAGCAGCTCAAGTGTCACCGGCGCGCGTCGCACCCGCCGCGCTTCCAGAGGCCGCGCGCCTGCGGCCGAGCCGAGAGGCGCGCGCGGCCCTGCGTCCAGACGTTCGCCACGGCGGAGCAGCTCAAGTGTCACCGGCGCGCGTCGCACCCGCCGCGCTTCCAGAGGCCGCGCGCCTGCGGCCGAGCCGAGAGGCGCGCGCGGCCCTGCGTCCAGTGCGGTGAGATGATGGCGAACGCGCGCGACTACTGGACGCACTTCCGCCGCGCGCACCCCGGCGACGCGTACCCGCTGCAGGTGCCCATGTCGCACATCTGCGAACACTGCGGCAAGGGCTTCAGGTGCAACGCGCTGCTCGCGATCCACCGGCACGTGCACACCGGCACGCGCAACTACCAGTGCACTCTCTGCCCCAAGAGCTTCTTCAACCCGCTGAACCTGCGCAACCACCTCGTGTCGCACTCGGAGCGGCGGCCGCACGTCTGCCACATCTGCCGGAAGGGATTCAAGTTCAAGTCCGCACTCGAGAGGCACATGCGGGTATGTATAGAGAGCTTCTTCAACCCGCTGAACCTGCGCAACCACCTCGTGTCGCACTCGGAGCGGCGGCCGCACGTCTGCCACATCTGCCGGAAGGGCTTCAAGTTCAAGTCCGCCCTCAAACGGCACATGCGGGTATGTATAGAGAGCTTCTTCAACCCGCTGAACCTGCCCAATCACCTCGTGTCGCACTCGGAGCGGCGGCCGCACGTCTGCCACATCTGCCGGAAGGGATTCAAGTTCAAGTCCGCACTCGAGAGGCACATGCGGGTATGTATAGAGAGCTTCTTCAACCCGCTGAACCTGCGCAACCACCTCGTGTCGCACTCGGAGCGGCGGCCGCACGTCTGCCACATCTGCCGGAAGGGCTTCAAGTTCAAGTCCGCCCTCGAGCGGCACATGCGGGTATGTATAGAGAGCTTCTTCAACCCGCTGAACCTGCGCAACCACCTCGTGTCGCACTCGGAGCGGCGGCCGCACGTCTGCCACATCTGCCGGAAGGGATACAAGTTCAAGTCCGCACTCGAGCGGCACATGCGGGTATGTATAGAGAGTTTCTTCAACCCGCTGAACCTGCGCAACCACCTCGTGTCGCACTCGGAGCGGCGGCCGCACTTCTGCCACATCTGCCGGAAGGGCTTCAAGTTCAAGTCCGCCTTCGAGCGGAACATGCGGGTATGTATAGAGAGCTTCTTCAACCCGCTGAACCTGCGCAACCACCTCGTGTCGCACTCGGAGCGGCGGCCGCACTTCTGCCACATCTGCCGGAAGGGCTTCAAGTTCAAGTCCGCCGTCGAGCGGAACATGCGGGTATGTATAGAGAGCTTCTTCAACCCGCTGAACCTGCGCAACCACCTCGTGTCGCACTCGGAGCGGCGGCCGCACTTCTGCCACATCTGCCGGATGGGCTTCAAGTTCAAGTCCGCCTTCGAGCGGAACATGCGGGTATGTATAGAGAGCTTCTTCAACCCGCTGAACCTGCGCAACCACCTCGTGTCGCACTCGGAGCGGCGGCCGCATTTCTGCCACATCTGCCGGAAGGGCTTCAAGTTCAAGTCCGCCTTCGAGCGGAACATGCGGACGCACACAGGAGTGAAGCCATACGCCTGTGAGGTCTGTAGCAAAGCGTTCTCTGACTCAAGCGGGTGTCGGGTCCACGTGCGGTCCGTGCACTCGCTGCGTCCGACCCCCGCACCGGGCGCTCCACACCGCGACTAG
- Protein Sequence
- MWDVRVCVACLATDVRMYSMSASSLLQPYQLLAGVQDWEGLPQTMCYECGALLGKFRVFRERCHRAYVTLRDMVMDHDEITLKRVQQIDRRSIKPSLCSPLARSPVYSTSVGPEPAERRRTRRRHKRKAASGKRGGGGDVRPNVEYFVEIDKDEVTSIKSEIEFADDLPEVTPSDSDSDLPLRRPSERARGPGGGERAAPEVKREPADCGEACGYLEENVTKEELIEHVRMRQHSTAYKKARYKCTLCYKSFPRRDRYHNHMLLHDPVSGEHACEVCLVRMCTEESLGDHVKKNHSKKYTCSSCGHVSFNQNTAAMHAKSHQTLSLRNTTHLDKLQTTAVKLTTEEQMQVFQAKGTSEEFVQAKFKCKLCFHISSRKEGLQRHKRKHDPLISGKVECDVCRLRFKTRQAMTQHQIRSHMKRYTCNTCSDVCYSLSEAKAHRVWHERGCKPGGRRRAVKREPRDQVGELRETMSIEGLTQAEQVRHFMETRNSDAPFKCDVCLKGHYDANAFRNHQLKHEPVSGKFQCDICKYRYKKRYHIQRHIVYFHKNQYRCKICNQLFHNRCVSVLFLSASASLARCCSPMAATKHHLWHKGKVYECKHCGLQSNILSTHLTHLRLKHPSEHVCGACGEAFVSKLGLHQHHRITHAHPSEHVCGACGEAFVSKLGLHQHHRITHAHPSEHVGGACGEAFVSKLGLHQHHRITHALKEDSTPTAADAAGPRCAACDIQFTSRQAWTRHILISPKHQHERSTISNGCGSCGETFATAEQLKCHRRASHPPRFQRPRACGRAERRARPCVQTFATAEQLKCHRRASHPPRFQRPRACGRAERRARPCVQCGEMMANARDYWTHFRRAHPGDAYPLQVPMSHICEHCGKGFRCNALLAIHRHVHTGTRNYQCTLCPKSFFNPLNLRNHLVSHSERRPHVCHICRKGFKFKSALERHMRVCIESFFNPLNLRNHLVSHSERRPHVCHICRKGFKFKSALKRHMRVCIESFFNPLNLPNHLVSHSERRPHVCHICRKGFKFKSALERHMRVCIESFFNPLNLRNHLVSHSERRPHVCHICRKGFKFKSALERHMRVCIESFFNPLNLRNHLVSHSERRPHVCHICRKGYKFKSALERHMRVCIESFFNPLNLRNHLVSHSERRPHFCHICRKGFKFKSAFERNMRVCIESFFNPLNLRNHLVSHSERRPHFCHICRKGFKFKSAVERNMRVCIESFFNPLNLRNHLVSHSERRPHFCHICRMGFKFKSAFERNMRVCIESFFNPLNLRNHLVSHSERRPHFCHICRKGFKFKSAFERNMRTHTGVKPYACEVCSKAFSDSSGCRVHVRSVHSLRPTPAPGAPHRD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -