Nswa021665.1
Basic Information
- Insect
- Nematopogon swammerdamellus
- Gene Symbol
- -
- Assembly
- GCA_946902865.1
- Location
- CAMPPV010000827.1:129926-153763[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 24 0.091 6.9 8.2 1.0 1 23 123 146 123 146 0.97 2 24 0.12 9.2 7.8 1.2 1 23 208 231 208 231 0.94 3 24 0.049 3.7 9.1 0.1 2 21 238 257 237 258 0.93 4 24 0.049 3.7 9.1 0.1 2 21 277 296 276 297 0.93 5 24 0.049 3.7 9.1 0.1 2 21 316 335 315 336 0.93 6 24 0.049 3.7 9.1 0.1 2 21 355 374 354 375 0.93 7 24 0.049 3.7 9.1 0.1 2 21 394 413 393 414 0.93 8 24 0.049 3.7 9.1 0.1 2 21 433 452 432 453 0.93 9 24 0.049 3.7 9.1 0.1 2 21 472 491 471 492 0.93 10 24 0.049 3.7 9.1 0.1 2 21 511 530 510 531 0.93 11 24 0.012 0.92 11.0 0.3 2 23 550 572 549 572 0.95 12 24 1.2 93 4.7 0.0 2 23 579 601 578 601 0.92 13 24 1.7 1.3e+02 4.3 3.1 3 22 612 631 611 635 0.89 14 24 0.001 0.079 14.3 0.9 1 23 643 666 643 666 0.93 15 24 0.0019 0.14 13.5 0.4 3 23 673 694 672 694 0.97 16 24 8.1 6.1e+02 2.1 0.1 7 23 702 719 702 719 0.94 17 24 8.1 6.1e+02 2.1 0.1 7 23 727 744 727 744 0.94 18 24 8.1 6.1e+02 2.1 0.1 7 23 752 769 752 769 0.94 19 24 0.00011 0.0083 17.4 0.4 2 23 779 800 778 800 0.95 20 24 0.017 1.3 10.5 0.7 1 23 806 829 806 829 0.94 21 24 0.0036 0.28 12.6 0.5 1 23 872 895 872 895 0.95 22 24 0.017 1.3 10.5 0.7 1 23 932 955 932 955 0.94 23 24 0.017 1.3 10.5 0.7 1 23 998 1021 998 1021 0.94 24 24 0.017 1.3 10.5 0.7 1 23 1064 1087 1064 1087 0.94
Sequence Information
- Coding Sequence
- ATGGTAACGCGCTGGCAGCTCAAGCCGGAGTTCCAGTACAGGCCGGAGTGTACAAGTATGGAGTTGAACTGCTCTGAGGGAGACGGGGCCGTGTGCGCGACCTGTCTGAGCGAGCGTCGCACGACGCCGTTGCTGCGACTTGCGCGCGTATGCAACGCGTTGCTGAATGAAGCGGCGGTCGCCGAGTGGTCGCGCGTGTGCTGGGAGTGTGAGAGCTTCCTAAAGCGGTGTCTCAGGTTCGCGCACCGCGCCCGCCGGGCGCAGGCTGCGCTCGTTCGTGTCAACGAGACGGTGTCGCTGAGCGAGGCGGAGATGCGGGCGTCGCTGGAGGAGGACGCGCGGAGGCCGCAGTACGCGGACTCTAGCTACAAGTGCGAGCGGTGCGCGCTCGGCTACTACACCGAGCGCCAGCTGCGCGACCATCGCCTCTCCAGACACCGGCCGAAACCGAGCCACCTGCCGTGCCCCGTCTGCGCGGTGTACGTGCGCGAGGACGCCCTGGAGGGCCACCGGCTGAATCACTACACGGTGTTTCAGTGCCGCGCGTGCCCGGTGCGGCAGCGCGTCGCGAAGCTCATGTGGAGTCACGTGCGGCGCGCGCATCGCACGCCGGCCGAGCACTACCCCTGTGCGCACTGCGACAGCGTATTCACGTCCGCGTCGCGGCGCCGCTACCACGCGGAGACGCGGCACAAGCACCCGGAGCCGGTCAAGTGCGAGTTCTGCGGCAAGAGCTACCGCGGCATGCCCGTACTCAACACGCACATCAAGTCCGCGTCGCGGCGCCGCTACCACGCGGAGACGCGGCACAAGCACCCGGAGCCGGTCAAGTGCGAGTTCTGCGGCAAGAGCTACCGCGGCATGCCCGTACTCAACACGCACATCAAGTCCGCGTCGCGGCGCCGCTACCACGCGGAGACGCGGCACAAGCACCCGGAGCCGGTCAAGTGCGAGTTCTGCGGCAAGAGCTACCGCGGCATGCCCGTACTCAACACGCACATCAAGTCCGCGTCGCGGCGCCGCTACCACGCGGAGTCGCGGCACAAGCACCCGGAGCCGGTCAAGTGCGAGTTCTGCGGCAAGAGCTACCGCGGCATGCCCGTACTCAACACGCACATCAAGTCCGCGTCGCGGCGCCGCTACCACGCGGAGACGCGGCACAAGCACCCGGAGCCGGTCAAGTGCGAGTTCTGCGGCAAGAGCTACCGCGGCATGCCCGTACTCAACACGCACATCAAGTCCGCGTCGCGGCGCCGCTACCACGCGGAGACGCGGCACAAGCACCCGGAGCCGGTCAAGTGCGAGTTCTGCGGCAAGAGCTACCGCGGCATGCCCGTACTCAACACGCACATCAAGTCCGCGTCGCGGCGCCGCTACCACGCGGAGACGCGGCACAAGCACCCGGAGCCGGTCAAGTGCGAGTTCTGCGGCAAGAGCTACCGCGGCATGCCCGTACTCAACACGCACATCAAGTCCGCGTCGCGGCGCCGCTACCACGCGGAGACGCGGCACAAGCACCCGGAGCCGGTCAAGTGCGAGTTCTGCGGCAAGAGCTACCGCGGCATGCCCGTACTCAACACGCACATCAAGTCCGCGTCGCGGCGCCGCTACCACACGGAGACGCGGCACAAGCACCCGGAGCCGGTCAAGTGCGAGTTCTGCGGCAAGAGCTACCGCGGCATGCCCGTACTCAACACGCACATCAAGAACACGCACGGGGAGCGCGCGCGCGTGCCGTGCGCGGTGTGCGGGCGCACGTACCTCGGCGAGGCGAACATGCGCGCGCACGCGCGGCTCGCGCACCGCGCGTCGCCGGCGGCGCGCCGCCCGTGCTGCGAGCCCTGCCAGCTCACCTTCAAGAGCCGCGAGACATACAAGATGCATCTCAAGACGAGCAGGAGTCACGTCGCTCCAGAGCACATGAAGTACAAGTGTTCGGTGTGCGAGAAGGGTTTCGCGGTGAAGAGGAGTCTGCAGGAACACCACGAGGCGAGGCATCTGTTCAAGACGAACGCTTGCCAGCAGTGCGACAAGACGTACAGCTCGGTGCGCGCGCTGCGCTACCACGAGCGGCGCGCGCACTCGGGCGCGGAGCGCGTGCGCGACAAGACGTACAGCTCGGTGCGCGCGCTGCGCTACCACGAGCGGCGCGCGCACTCGGGCGCGGAGCGCGTGCCCGACAAGACGTACAGCTCGGTGCGCGCGCTGCGCTACCACGAGCGGCGCGCGCACTCGGGCGCGGAGCGCGTGCGCGACAAGACGTACAGCTCGGTGCGCGCGCTGCGCTACCACGAGCGGCGCGCGCACTCGGGCGCGGAGCGCGTGCGCGACAAGGTGTGCGAGCACTGCGGCAAAGCATTCTACTCGGCGAAGGCTCTGCGTATACACACGGTGGTGCACAGCGACGCGCGTCCGTTCGTCTGCTCGGCGTGCGACGCCTCCTTCCGCTTCTACTCGGCTCTCTACAAGCACAACCAGATCAAGCACCGCGCGCACGCGAACAGCGAGCAGCAACATCACCCCGCTGTATCAAGCACCGCGCGCACGCGAACAGCGAGCAGCAACATCACCCCGCTGTGTAGCGCTGTCACCCTGGTGTATCAAGTCTGTCCGTTCGTCTGCGCGGTGTGCGACGCCTCCTTCCGCTTCTACTCGGCTCTCTACAAGCACAACCAGATCAAGCACCGCGCGCACGCGAACAGTGAGCAGCAACATCACCCCGCTGTGTATCACACGAGCAGCAACATCACCCCGCTGTGTAGCGCTGTCACCCTGGTGTATCAAGTCTGTCCGTTCGTCTGCTCGGCGTGCGACGCCTCCTTCCGCTTCTACTCGGCTCTCTACAAGCACAACCAGATCAAGCACCGCGCGCACGTGAACAGCGAGCAGCAACATCACCCCGCTGTATCAAGCACCGCGCGCACGCGAACAGCGAGCAGCAACATCACCCCGCTGTGTAGCGCTGTCACCCTGGTGTATCAAGTCTGTCCGTTCGTCTGCTCGGCGTGCGACGCCTCCTTCCGCTTCTACTCGGCTCTCTACAAGCACAACCAGATCAAGCACCGCGCGCACGCGAACAGCGAGCAGCAACATCACCCCGCTGTATCAAGCACCGCGCGCACGCGAACAGCGAGCAGCAACATCACCCCGCTGTGTAGCGCTGTCACCCTGGTGTATCAAGTCTGTCCGTTCGTCTGCTCGGCGTGCGACGCCTCCTTCCGCTTCTACTCGGCTCTCTACAAGCACAACCAGATCAAGCACCGCGCGCACGCGAACAGCGAGCAGCAACATCACCCCGCTGTCGCTGTCACCCTGGTGTATCAAGTCTGTCCGTTCGTCTGCGCGGCGTGCGACGCCTCCTTCCGCTTCTACTCGAAGGGCGTTGGTCTGGGATTTCACGTGCGCGGATATCCTGGCCCCTAG
- Protein Sequence
- MVTRWQLKPEFQYRPECTSMELNCSEGDGAVCATCLSERRTTPLLRLARVCNALLNEAAVAEWSRVCWECESFLKRCLRFAHRARRAQAALVRVNETVSLSEAEMRASLEEDARRPQYADSSYKCERCALGYYTERQLRDHRLSRHRPKPSHLPCPVCAVYVREDALEGHRLNHYTVFQCRACPVRQRVAKLMWSHVRRAHRTPAEHYPCAHCDSVFTSASRRRYHAETRHKHPEPVKCEFCGKSYRGMPVLNTHIKSASRRRYHAETRHKHPEPVKCEFCGKSYRGMPVLNTHIKSASRRRYHAETRHKHPEPVKCEFCGKSYRGMPVLNTHIKSASRRRYHAESRHKHPEPVKCEFCGKSYRGMPVLNTHIKSASRRRYHAETRHKHPEPVKCEFCGKSYRGMPVLNTHIKSASRRRYHAETRHKHPEPVKCEFCGKSYRGMPVLNTHIKSASRRRYHAETRHKHPEPVKCEFCGKSYRGMPVLNTHIKSASRRRYHAETRHKHPEPVKCEFCGKSYRGMPVLNTHIKSASRRRYHTETRHKHPEPVKCEFCGKSYRGMPVLNTHIKNTHGERARVPCAVCGRTYLGEANMRAHARLAHRASPAARRPCCEPCQLTFKSRETYKMHLKTSRSHVAPEHMKYKCSVCEKGFAVKRSLQEHHEARHLFKTNACQQCDKTYSSVRALRYHERRAHSGAERVRDKTYSSVRALRYHERRAHSGAERVPDKTYSSVRALRYHERRAHSGAERVRDKTYSSVRALRYHERRAHSGAERVRDKVCEHCGKAFYSAKALRIHTVVHSDARPFVCSACDASFRFYSALYKHNQIKHRAHANSEQQHHPAVSSTARTRTASSNITPLCSAVTLVYQVCPFVCAVCDASFRFYSALYKHNQIKHRAHANSEQQHHPAVYHTSSNITPLCSAVTLVYQVCPFVCSACDASFRFYSALYKHNQIKHRAHVNSEQQHHPAVSSTARTRTASSNITPLCSAVTLVYQVCPFVCSACDASFRFYSALYKHNQIKHRAHANSEQQHHPAVSSTARTRTASSNITPLCSAVTLVYQVCPFVCSACDASFRFYSALYKHNQIKHRAHANSEQQHHPAVAVTLVYQVCPFVCAACDASFRFYSKGVGLGFHVRGYPGP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -