Nswa006916.1
Basic Information
- Insect
- Nematopogon swammerdamellus
- Gene Symbol
- -
- Assembly
- GCA_946902865.1
- Location
- CAMPPV010000204.1:7616-18803[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0015 0.11 13.8 0.5 1 23 38 61 38 61 0.93 2 12 0.00066 0.05 15.0 0.7 1 23 92 115 92 115 0.94 3 12 0.00071 0.054 14.9 0.8 1 23 137 160 137 160 0.94 4 12 0.21 16 7.1 0.0 1 20 182 201 182 203 0.90 5 12 0.0015 0.11 13.8 0.5 1 23 233 256 233 256 0.93 6 12 0.0084 0.64 11.5 0.3 3 21 291 309 290 314 0.91 7 12 5.5e-05 0.0041 18.4 0.6 3 23 324 345 324 345 0.98 8 12 0.5 38 5.9 0.3 2 23 365 387 364 387 0.96 9 12 2.6e-05 0.002 19.4 0.4 1 23 398 420 398 420 0.98 10 12 8.1e-06 0.00062 21.0 3.0 1 23 426 448 426 448 0.99 11 12 0.00019 0.015 16.6 0.7 1 23 454 476 454 476 0.98 12 12 3.1e-05 0.0023 19.2 0.4 1 23 482 505 482 505 0.98
Sequence Information
- Coding Sequence
- ATGTTTACAACGCTTGGCGCACGTATTGCGTCAGCGGCCGCGGCCCGCTCGTCATACGCTGGCAAATGGACGTCGTACCTCTCGCACGTTCGCATCAAACACCCGTCGGAGCACATCTGCAACGTGTGCGGCTACTCGTTCGTGAGCAAGCTCGGCCTCGCCATGCACAAGACTATGATGCACAAGGACGTGCAGCAAGCTCAGCCTCGCCATGCACAAGACTATGATGCACAAGGACGTGCAGGTAACTATGCGCTGTCGCCTCCGTCGGAGCACATCTGCAACGTGTGCGGCTACTCGTTCGCGAGCAAGCTCAGCCTCGCCATGCACAAGACTATGATGCACAAGGACGTGCAGGTAACTATGCGCTGTCGCCTTCGTAACTATGCGCTGTCGCCTTCGTCGGAGCACATCTGCAACGTGTGCGGCTACTCGTTCGTGAGCAAGCTCAGCCTCGCCATGCACAAGACTATGATGCACAAGGACGTGCAGGTAACTATGCGCTGTCGCCTTCGTAACTATGCGCTGTCGCCTCCGTCGGAGCACATCTGCAACGTGTGCGGCTACTCGCTCGTGAGCAAGCTCGGCCTCGCCATGCACAAGGACGTGCAGGTAACTATGCGCTGTCGCCTCCGTCGGAGCACATCTGCAACGTGTGCGGCTACTCGTAACTATGCGCTGTCGCCTCCGTCGGAGCACATCTGCAACGTGTGCGGCTACTCGTTCGTGAGCAAGCTCGGCCTCGCCATGCACAAGACTATGATGCACAAGGACGTGCAGTTTGCAGAGAGGAAGGAGGAGGTGGAGGTGCGCCGGCGCGGCGCGGAGGCCGACGCGCCGGCGGAGGGCGCCGCCGACGCGACGCCGTACTGCGTCGAGTGCGACGTGCAGTTCACGTCGCGGCAGGCTTGGAAGCGGCACATGGTCACGTCCGCCAAGCACAGCGTCAACAATGACTTCGGGAACGGATGTCGCGTGTGCGGCGAGAGCTTCCCGACGGCGGAGGAGCTGCGCGTGCACCACCGCAAGCTGCACGCGCGCAAGCGCCCCAAGAACTACGGCAAGAAACCCTCCGACTTGGTGTGGCCCATCAAGTGCGAACATTGCGCGGAGGAGATACCGAACGCGCGCGAGTACTGGACACACTTCCGTCGCGTGCATCCCGACAAGAAGTACCCCATTAAGAAGAGCTTCGTGTGCGAAATTTGCGGTAAAGAGTTCCGGGGCAACGCGTTCCTTGTGTACCACAAGCGGACGCACTTCGAGGAGCGCTCGTACCGTTGCAAGCAGTGCCCCAAGTCATTCTTCAACCGGACCAACCTGATGATGCACGAGAAGACTCACAGCGACCACCGCCCGTACCCCTGCACCGTCTGTTTCAAGGCGTTCAAGCTGAAGGGGGCCCTCGACAGACACTTCCGGAGTCACACGGGGGTGAAACCCTACGAGTGTGAGTTCTGTGGGAAGGCGTTCGGCCAGTCCAACAGTCGCAAGCTTCACATACGCACAGTGCACCTGAAGCAACCGGCGCCCTACATCAGCAAGAGTCGCCTCGAGCGGCGACGGCAAGCCGAGTCCGTGAAGACTCATCCACCGTTCCCTTACTGA
- Protein Sequence
- MFTTLGARIASAAAARSSYAGKWTSYLSHVRIKHPSEHICNVCGYSFVSKLGLAMHKTMMHKDVQQAQPRHAQDYDAQGRAGNYALSPPSEHICNVCGYSFASKLSLAMHKTMMHKDVQVTMRCRLRNYALSPSSEHICNVCGYSFVSKLSLAMHKTMMHKDVQVTMRCRLRNYALSPPSEHICNVCGYSLVSKLGLAMHKDVQVTMRCRLRRSTSATCAATRNYALSPPSEHICNVCGYSFVSKLGLAMHKTMMHKDVQFAERKEEVEVRRRGAEADAPAEGAADATPYCVECDVQFTSRQAWKRHMVTSAKHSVNNDFGNGCRVCGESFPTAEELRVHHRKLHARKRPKNYGKKPSDLVWPIKCEHCAEEIPNAREYWTHFRRVHPDKKYPIKKSFVCEICGKEFRGNAFLVYHKRTHFEERSYRCKQCPKSFFNRTNLMMHEKTHSDHRPYPCTVCFKAFKLKGALDRHFRSHTGVKPYECEFCGKAFGQSNSRKLHIRTVHLKQPAPYISKSRLERRRQAESVKTHPPFPY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -