Nswa021686.1
Basic Information
- Insect
- Nematopogon swammerdamellus
- Gene Symbol
- -
- Assembly
- GCA_946902865.1
- Location
- CAMPPV010000827.1:426014-441127[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.019 1.4 10.4 1.1 1 21 238 258 238 261 0.90 2 13 0.0011 0.086 14.2 1.4 1 23 268 290 268 290 0.97 3 13 3.2e-05 0.0024 19.1 1.6 1 23 340 362 340 362 0.98 4 13 2.1e-05 0.0016 19.7 1.1 1 23 385 407 385 407 0.98 5 13 2.1e-05 0.0016 19.7 1.1 1 23 430 452 430 452 0.98 6 13 2.1e-05 0.0016 19.7 1.1 1 23 476 498 476 498 0.98 7 13 2.1e-05 0.0016 19.7 1.1 1 23 521 543 521 543 0.98 8 13 2.1e-05 0.0016 19.7 1.1 1 23 567 589 567 589 0.98 9 13 1.4 1.1e+02 4.4 0.4 3 23 614 634 612 634 0.85 10 13 1.4 1.1e+02 4.4 0.4 3 23 659 679 657 679 0.85 11 13 0.00081 0.062 14.7 3.1 2 23 684 705 683 705 0.95 12 13 0.0008 0.061 14.7 7.7 1 23 713 735 713 735 0.98 13 13 0.0026 0.2 13.1 0.6 1 23 741 764 741 764 0.96
Sequence Information
- Coding Sequence
- ATGAGCGACATGGCGGTGAAGGTGGAAGTGATAGAAACATCGGAGTTCACTAGTGCGTGTTCCATGTGCCTCAGTACGGACAGAATGACATACGGAGTGGAGTCGGTGAGCTACGCATACGGGGTGATGACAGACTGGGCGCCGCAGCGGGGCGCGCGCGTGTGCTGGGAGTGCCGCGCAGCCCTCGTGCGCCTGCTCCGGCTCAAGGTGCAGGCCCTGCGCGCGAGAGAGCTACTCGACGCCGCCGCGCACTCTCTCAACACTGCGGAGACGCTCTCCGGCTGTTGCATGTCTCAGCTCGCGTCGCACGCGATCCCGACGTACGGTTACATTTTCTCGCACGGCGGCGATCACTCGGCCGACGACGTCAGCTCGCCGGCCGCGTGGTGCAAGAACGAGCCGGACGCGGACGGGGGGGACTGCGCGCCCGAGTGCGAGGTGTGGGCCGAGGCGGCCGTGCCGAATGTCGAGTACGACGTGCCGATCGTGGACGGCGGCGTACTGAGCAAGATCGAAGAACCGCCTCCGCTTGCCAAAAAAAAGCGAGCGACGTCAACGTCGAAAATCAAAGACGTCGACACCAACACGGCGGTGAAGAGAAAACGCGCGATAGCGAAACGCAACGAGGACATCATAGAGATGTACGCGGTGACCCCGGCCGAGCTGCAGACGTACAGGGAGAACGTGTTCCGTCAGATGCGCGCGTCCAAGTATACATGCACTACCTGCATGGAGGGTTTCAAGTATGAGGACAACTTGAAGAAACACAACGACCAGCTGCATTCAGAGAGAGCGGGAGCGCACACGTGCGACGTGTGCCGGAGCCGCTTCGCGTCGGCGGGCGAGCTGCAGCGGCACCGGAGCCGGCACTCGCTGCTGTACCGCTGCCGCGAGCCCGGCTGCCGGTTCACGCACCACAAGAGTAGGATCGTGCGCCAGCACCATGGCCTGCACCATCTGAGGCAACAGTCAGAGGCGAAGCGGCGAATAGACTCGGTGTTCAGGCTGAGCGACAAGTACGAGTGCGACTACTGCGGCAAGCAGTTCCCGCAGCGGCGGCAGGTCATGGTACACATCAAGCATCACTTCAAGAAGATCATACAGTCGGAGGCGAAGCGGCGAATAGACTTGGTGTTCCGGCTGAGCGACAAGTACGAGTGTGACTACTGCGGCAAGGAGTTCCCGCAGCGGCGGCAGGTCATGGTACACATCAAGCATCACTTCAAGAAGATCATACAGTCGGAGGCGAAGCGGCGAATAGACTTGGTGTTCCGGCTGAGCGACAAGTACGAGTGTGACTACTGCGGCAAGGAGTTCCCGCAGCGGCGGCAGGTCATGGTACACATCAAGCATCACTTCAAGAAGATCATGTGCGAGTCGGAGGCGAAGCGGCGAATAGACTTGGTGTTCCGGCTGAGCGACAAGTACGAGTGTGACTACTGCGGCAAGGAGTTCCCGCAGCGGCGGCAGGTCATGGTACACATCAAGCATCACTTCAAGAAGATCATACAGTCGGAGGCGAAGCGGCGAATAGACTTGGTGTTCCGGCTGAGCGACAAGTACGAGTGTGACTACTGCGGCAAGGAGTTCCCGCAGCGGCGGCAGGTCATGGTACACATCAAGCATCACTTCAAGAAGATCATGTGCGAGTCGGAGGCGAAGCGGCGAATAGACTTGGTGTTCCGGCTGAGCGACAAGTACGAGTGTGACTACTGCGGCAAGGAGTTCCCGCAGCGGCGGCAGGTCATGGTACACATCAAGCATCACTTCAAGAAGATCATACAGTCGGAGGCTAAGCGGCGAATAGACTTGGTGTTCCGGCTGAGCGACAAGTACGAGTGTGACTACTACGGCAAGCAGTTCCCGCAGCGGCGGCAGGTCATGGTACACATCAAGCATCACTTCAAGAAGATCATACAGTCGGAGGCGAAGCGGCGAATAGACTTGGTGTTCCGGCTGAGCGACAAGTACGAGTGTGACTACTACGGCAAGCAGTTCCCGCAGCGGCGGCAGGTCATGGTACACATCAAGCATCACTTCAAGAAGATCATGTGCGAGGTGTGCGGGCACAAGTGCTCGACGCTGTCGCAGCTGAGGAAGCACCGGCTGGCGCACCTGGACCCGAGCTACCGGCCGCACGAGTGCACCGAGTGCCACAAGAGATTCATAGACAGACACAAGCTGCTGCTGCACACACGCACGCACACCGGCGAGCGTCCGTTCAAGTGCGAGGCGTGCGGCGCCGAGTTCGTCAGCAAGGAGGTGCTGACACGGCACGCGCGCCACCGGCACAGCGGCCCCGCCGCCGCCGGCGGGAAGAGGAAGTTCTCCCAGGCGAGGACCAAGTCATACTTCATCAACAGGTATCTCATATTCGTGCAGCGGGAGTTATAG
- Protein Sequence
- MSDMAVKVEVIETSEFTSACSMCLSTDRMTYGVESVSYAYGVMTDWAPQRGARVCWECRAALVRLLRLKVQALRARELLDAAAHSLNTAETLSGCCMSQLASHAIPTYGYIFSHGGDHSADDVSSPAAWCKNEPDADGGDCAPECEVWAEAAVPNVEYDVPIVDGGVLSKIEEPPPLAKKKRATSTSKIKDVDTNTAVKRKRAIAKRNEDIIEMYAVTPAELQTYRENVFRQMRASKYTCTTCMEGFKYEDNLKKHNDQLHSERAGAHTCDVCRSRFASAGELQRHRSRHSLLYRCREPGCRFTHHKSRIVRQHHGLHHLRQQSEAKRRIDSVFRLSDKYECDYCGKQFPQRRQVMVHIKHHFKKIIQSEAKRRIDLVFRLSDKYECDYCGKEFPQRRQVMVHIKHHFKKIIQSEAKRRIDLVFRLSDKYECDYCGKEFPQRRQVMVHIKHHFKKIMCESEAKRRIDLVFRLSDKYECDYCGKEFPQRRQVMVHIKHHFKKIIQSEAKRRIDLVFRLSDKYECDYCGKEFPQRRQVMVHIKHHFKKIMCESEAKRRIDLVFRLSDKYECDYCGKEFPQRRQVMVHIKHHFKKIIQSEAKRRIDLVFRLSDKYECDYYGKQFPQRRQVMVHIKHHFKKIIQSEAKRRIDLVFRLSDKYECDYYGKQFPQRRQVMVHIKHHFKKIMCEVCGHKCSTLSQLRKHRLAHLDPSYRPHECTECHKRFIDRHKLLLHTRTHTGERPFKCEACGAEFVSKEVLTRHARHRHSGPAAAGGKRKFSQARTKSYFINRYLIFVQREL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -