Nswa001243.1
Basic Information
- Insect
- Nematopogon swammerdamellus
- Gene Symbol
- -
- Assembly
- GCA_946902865.1
- Location
- CAMPPV010000033.1:397208-404172[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.007 0.53 11.7 0.1 3 20 62 79 61 81 0.93 2 12 0.0084 0.64 11.5 0.0 2 20 143 161 143 163 0.93 3 12 0.0084 0.64 11.5 0.0 2 20 179 197 179 199 0.93 4 12 0.018 1.4 10.4 0.1 2 20 215 233 215 234 0.93 5 12 0.025 1.9 10.0 0.0 2 20 251 269 251 270 0.93 6 12 0.011 0.8 11.2 0.0 2 20 285 303 285 305 0.94 7 12 0.011 0.8 11.2 0.0 2 20 321 339 321 341 0.94 8 12 0.025 1.9 10.0 0.0 2 20 357 375 357 376 0.93 9 12 0.011 0.8 11.2 0.0 2 20 391 409 391 411 0.94 10 12 0.011 0.8 11.2 0.0 2 20 427 445 427 447 0.94 11 12 0.025 1.9 10.0 0.0 2 20 463 481 463 482 0.93 12 12 0.56 42 5.8 0.0 2 13 497 508 497 512 0.83
Sequence Information
- Coding Sequence
- ATGATATCTTCCATCACCGGTATTGAGAGTAAAGTTGTTCCGATCAAGTCGGAGTTTGTCGAGTACAACGACGATGGTTACGATGACCGCATACCCTCACCGCTCGGCGACTCTCAAGACTACTTTGATGACTACGTAAAAGAGGAACCGAAAGCATCCGAGGTGCCGCTGACGACTCAAGCTTGTGAAAACTGTGGAGCTGAGTTTGAGTCACTGTCATCTTTGCAACATCATTCGATGGTCTGCACGAAGTGTAATGGAGCGCGTGGAGGAGAGGAGCAACTACTGCCCGGTGTGCGGCGCGAGCTTCGACAACGCTCTCGCCCTCCTCTAGCACACAACCGACTCACGGCCAGGGGCGACTATGGAGCGCGTGGAGGAGAGGAGCAACTACTGCCCGTGGAGCGCGTGGAGGAGAGGAGCAACTACTGCCCGGTGTGCGGCGCGAGCTTCGACAACGCTCTCGCCCTCCTCCAGCACATAACCGTCTCACGGCCAGGGGCGACTATGGAGCGCGTGGAGGAGAGGAGCAACTACTGCCCGGTGTGCGGCGCGAGCTTCGACAACGCTCTCGCCCTCCTCCAGCACATAACCGTCTCACGGCCAGGGGCGACTATGGAGCGCGTGGAGGAGAGGAGCAACTACTGCCCGGTGTGCGGCGCGAGCTTCGACAACGCTCTCGCCCTCCTCCATCACACAACCGACTCACGGCCAGGGGGGACTATGGAGTGCGTGGAGGAGAGGAGCAACTACTGCCCGGTGTGCGGCGCGAGCTTCGACAACGCTCTCGCCCTCCTACAGCACACAACCGACTCACGGCCAGGGGTGGAGCGCGTGGAGGAGAGGAGCAACTACTGCCCGGTGTGCGGCGCGAGCTTCGACAACGCTCTCGCCCTACTCCAACACATAACCGACTCACAGCCACGGGGGACTATGGAGCGCGTGGAGGAGAGGAGCAACTACTGCCCGGTGTGCGGCGCGAGCTTCGACAACGCTCTCGCCCTACTCCAACACATAACCGACTCACAGCCACGGGGGACTATGGAGCGCGTGGAGGAGAGGAGCAACTACTGCCCGGTGTGCGGCGCGAGCTTCGACAACGCTCTCGCCCTCCTACAGCACACAACCGACTCACGGCCAGGGGTGGAGCGCGTGGAGGAGAGGAGCAACTACTGCCCGGTGTGCGGCGCGAGCTTCGACAACGCTCTCGCCCTACTCCAACACATAACCGACTCACAGCCACGGGGGACTATGGAGCGCGTGGAGGAGAGGAGCAACTACTGCCCGGTGTGCGGCGCGAGCTTCGACAACGCTCTCGCCCTACTCCAACACATAACCGACTCACAGCCACGGGGGACTATGGAGCGCGTGGAGGAGAGGAGCAACTACTGCCCGGTGTGCGGCGCGAGCTTCGACAACGCTCTCGCCCTCCTACAGCACACAACCGACTCACGGCCAGGGGTGGAGCGCGTGGAGGAGAGGAGCAACTACTGCCCGGTGTGCGGCGCGAGCTTCGACAACGCTCTCGCCCTCCTCTAG
- Protein Sequence
- MISSITGIESKVVPIKSEFVEYNDDGYDDRIPSPLGDSQDYFDDYVKEEPKASEVPLTTQACENCGAEFESLSSLQHHSMVCTKCNGARGGEEQLLPGVRRELRQRSRPPLAHNRLTARGDYGARGGEEQLLPVERVEERSNYCPVCGASFDNALALLQHITVSRPGATMERVEERSNYCPVCGASFDNALALLQHITVSRPGATMERVEERSNYCPVCGASFDNALALLHHTTDSRPGGTMECVEERSNYCPVCGASFDNALALLQHTTDSRPGVERVEERSNYCPVCGASFDNALALLQHITDSQPRGTMERVEERSNYCPVCGASFDNALALLQHITDSQPRGTMERVEERSNYCPVCGASFDNALALLQHTTDSRPGVERVEERSNYCPVCGASFDNALALLQHITDSQPRGTMERVEERSNYCPVCGASFDNALALLQHITDSQPRGTMERVEERSNYCPVCGASFDNALALLQHTTDSRPGVERVEERSNYCPVCGASFDNALALL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -