Nswa003954.1
Basic Information
- Insect
- Nematopogon swammerdamellus
- Gene Symbol
- -
- Assembly
- GCA_946902865.1
- Location
- CAMPPV010000111.1:750187-766876[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.0023 0.18 13.2 2.5 1 23 18 40 18 40 0.98 2 19 0.5 38 5.9 0.7 2 23 48 70 47 70 0.92 3 19 5.7 4.3e+02 2.6 4.6 1 23 74 96 74 96 0.97 4 19 0.031 2.3 9.7 3.2 1 23 101 124 101 124 0.97 5 19 0.0063 0.48 11.9 0.1 1 23 128 151 128 151 0.92 6 19 0.13 9.6 7.8 0.1 2 21 170 189 170 194 0.91 7 19 5.5e-05 0.0042 18.4 0.7 3 23 205 226 205 226 0.97 8 19 5.2 4e+02 2.7 0.5 2 23 244 265 244 266 0.93 9 19 0.00086 0.065 14.6 0.4 1 23 278 300 278 300 0.98 10 19 0.00019 0.014 16.7 0.2 1 23 304 326 304 326 0.97 11 19 0.00014 0.011 17.1 2.6 1 23 332 354 332 354 0.98 12 19 0.00013 0.0097 17.2 2.3 1 23 360 383 360 383 0.96 13 19 0.0027 0.21 13.0 3.4 1 23 403 426 403 426 0.96 14 19 0.00013 0.0097 17.2 2.3 1 23 446 469 446 469 0.96 15 19 0.00013 0.0097 17.2 2.3 1 23 489 512 489 512 0.96 16 19 0.2 15 7.1 0.3 5 23 536 555 535 555 0.94 17 19 0.0065 0.5 11.8 2.7 1 23 577 600 577 600 0.96 18 19 0.0065 0.5 11.8 2.7 1 23 620 643 620 643 0.96 19 19 0.00013 0.0097 17.2 2.3 1 23 663 686 663 686 0.96
Sequence Information
- Coding Sequence
- ATGGAGGCGGTGAGAGAGCGAGGCAACGCGCGGGGCTACGACACGGCTCGGTATAAATGCACGCTCTGCTACAAGGCATTCAACGAGGAGAAGACTTACAACAACCACATGACACAGCATGACCCTGTATCCGGCGGCCTGGAGTGCGACATCTGCAAGCTGCGGTACGACACGCGACTCAAGATCTTCAAGCACATAACGAACAACCACGCGAGGAAGTACGCCTGCAAGCTCTGCGCGCACACCTGCTACAATCGTTCGTTTGCGCTGAACCACTACCGCTGGCACACGGGAGTTGTGTACAAGTGTGATCTGTGCGGGGCTAAGTTTGACAAGAAGACGAGTCACCGGAGCCACCTGCGCATCAAGCACCCGTCGGAGCACGTGTGCGGCGCCTGTGGAGAACCCTTCGTGAGCCTGTCCGGGCTGCGACAGCACGCCGACAGGATGCACTCGTTGAAGCGGGACACGGGTGTGAGCGGCGGGGAGGGCGGGAGCGCGGGGCCGCGCTGCGCCGCGTGCGACATACAGTTCACGTCGCGACAGGCGTGGACGAGGCACATACTCATCTCGCCCAAACACCAGCACGAGCGGCATAGCATTACAAACGGTTGTCAATACTGCGGTGAGTGTTTCGAGACAGCGGCGGAACTGAAAAAACATTATGTCACCGAGCATCGGAGACACAAGAGGACCTTCAAGATCAGCCCGCACAAGAAGTTCCCAGCCCAGTGCTCTCAGTGCGAGGAGATAATGCCGTCTGCGGGCAAGTACTGGCAACACTTCCGCGAGCACCACCCCGGCAAGCCCTTCCCTCTCACCGGCTCCTCGTTTATTTGCGAGTTCTGCGGCAACTGGTTCAAATACCAGTCGGCGCTGGAGGCGCACAAGCGGACGCACTCTGAGAAGCACCGGTGCGCGGTGTGCCCCAAGCGGTTCGTGAGGCTGGTGTCGCTGGCGGCGCACGCGCAGTCGCACGCCGACAGCGGACAGTTCAGCTGCGACGTCTGCAGCAGGCAGTTCGCCTACAAGAGATCTCTCACTAATCACTTTCGGACGCACACAGCGGAGAAGCCGCACGTGTGCGAGTGGTGCGGGAAGACGTTCGCGTACGACTGCAACCTGAAGAAGCACGAGCTGACCGTACACTGCGCCGCACCCGCGCCCTCCTCCTCACACCGCGTATATCACACAGCGGAGAAGCCGCACGTGTGCGAGTGGTGCAGGAAGACGTTCGCGTACGACTGCAACCTGAAGAAGCACGAGCTGACCGTACACTGCGCCGCCCCCGCGCCCTCCTCCTCACACAGCGTGTATCACACAGCGGAGAAGCCGCACGTGTGCGAGTGGTGCGGGAAGACGTTCGCGTACGACTGCAACCTGAAGAAGCACGAGCTGACCGTACACTGCGCCGCACCCGCGCCCTCCTCCTCACACCGCGTGTATCACACAGTGGAGAAGCCGCACGTGTGCGAGTGGTGCGGGAAGACGTTCGCGTACGACTGCAACCTGAAGAAACACGAGCTGACCGTACACTGCGGTGCCCCCGCACCCTCCTCCTCACACCGCGTGTATCACACAGCGGAGAAGCCGCACGTGTACGAGTGGTGCGGGAAGACGTTCGCGTACGACTGCAACCAGAAGAAACACGAGCTGACCGTACACTGCGCCGCACCGCACCCGCGCCCTCCTCCTCGCACCGCGTGTAGTCACACAGCGGAGAAGCCGCACGTGTGCGAGTGGTGCGGGAAGACGTTCGCGTACGACTGCAACCAGAAGAAACACGAGCTGACCGTACACTGCGCCGCACCCGCGCCCTCCTCCTCGCACCGCGTGTATCACACAGCGGAGAAGCCGCACGTGTGCGAGTGGTGCGGGAAGACGTTCGCGTACGACTGCAACCAGAAGAAACACGAGCTGACCGTACACTGCGCCGCACCCGCGCCCTCCTCCTCGCACCGCGTGTATCACACAGCGGAGAAGCCGCACGTGTGCGAGTGGTGCGGGAAGACGTTCGCGTACGACTGCAACCTGAAGAAGCACGAGCTGACCGTACACTGCGCCGCACCCGCGCCCTCCTCCTCGCACCGCGTGTAG
- Protein Sequence
- MEAVRERGNARGYDTARYKCTLCYKAFNEEKTYNNHMTQHDPVSGGLECDICKLRYDTRLKIFKHITNNHARKYACKLCAHTCYNRSFALNHYRWHTGVVYKCDLCGAKFDKKTSHRSHLRIKHPSEHVCGACGEPFVSLSGLRQHADRMHSLKRDTGVSGGEGGSAGPRCAACDIQFTSRQAWTRHILISPKHQHERHSITNGCQYCGECFETAAELKKHYVTEHRRHKRTFKISPHKKFPAQCSQCEEIMPSAGKYWQHFREHHPGKPFPLTGSSFICEFCGNWFKYQSALEAHKRTHSEKHRCAVCPKRFVRLVSLAAHAQSHADSGQFSCDVCSRQFAYKRSLTNHFRTHTAEKPHVCEWCGKTFAYDCNLKKHELTVHCAAPAPSSSHRVYHTAEKPHVCEWCRKTFAYDCNLKKHELTVHCAAPAPSSSHSVYHTAEKPHVCEWCGKTFAYDCNLKKHELTVHCAAPAPSSSHRVYHTVEKPHVCEWCGKTFAYDCNLKKHELTVHCGAPAPSSSHRVYHTAEKPHVYEWCGKTFAYDCNQKKHELTVHCAAPHPRPPPRTACSHTAEKPHVCEWCGKTFAYDCNQKKHELTVHCAAPAPSSSHRVYHTAEKPHVCEWCGKTFAYDCNQKKHELTVHCAAPAPSSSHRVYHTAEKPHVCEWCGKTFAYDCNLKKHELTVHCAAPAPSSSHRV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -