Nswa008788.2
Basic Information
- Insect
- Nematopogon swammerdamellus
- Gene Symbol
- -
- Assembly
- GCA_946902865.1
- Location
- CAMPPV010000267.1:69006-78306[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 0.014 1.1 10.8 0.8 3 23 743 764 742 764 0.95 2 21 0.71 54 5.4 0.2 1 21 1146 1166 1146 1167 0.96 3 21 0.0074 0.56 11.7 0.6 3 21 1251 1269 1249 1270 0.94 4 21 0.018 1.4 10.4 2.3 3 23 1321 1342 1320 1342 0.95 5 21 0.028 2.1 9.9 1.7 1 23 1348 1371 1348 1371 0.95 6 21 0.47 35 6.0 0.0 1 23 1395 1418 1395 1418 0.90 7 21 0.027 2.1 9.9 3.4 1 23 1423 1445 1423 1445 0.97 8 21 0.033 2.5 9.6 0.3 1 23 1451 1474 1451 1474 0.95 9 21 0.037 2.8 9.4 1.0 1 23 1489 1511 1489 1511 0.97 10 21 0.00026 0.02 16.2 1.8 1 23 1564 1587 1564 1587 0.97 11 21 0.0034 0.26 12.7 1.6 1 23 1651 1674 1651 1674 0.96 12 21 0.003 0.23 12.9 1.5 2 23 1700 1722 1699 1722 0.95 13 21 0.13 9.7 7.8 0.1 2 23 1728 1750 1727 1750 0.93 14 21 0.043 3.2 9.3 0.2 1 21 1793 1813 1793 1814 0.94 15 21 0.00061 0.047 15.1 1.0 1 23 1823 1845 1823 1845 0.93 16 21 0.00035 0.027 15.8 0.4 2 23 1944 1966 1944 1966 0.92 17 21 2.1e-07 1.6e-05 26.0 1.3 3 23 1973 1993 1972 1993 0.98 18 21 0.015 1.1 10.7 2.1 1 23 2019 2041 2019 2042 0.93 19 21 0.093 7 8.2 0.0 1 23 2065 2087 2065 2087 0.98 20 21 0.056 4.3 8.9 1.6 1 23 2093 2116 2093 2116 0.95 21 21 0.00027 0.021 16.2 0.8 1 23 2124 2147 2124 2147 0.97
Sequence Information
- Coding Sequence
- ATGAGTGCGTCGGTGTCGTGCGACGCGCTCTGCAGGCTGTGCCTGTCGTCTCGCGGCCGGCTGCTGCCTATATTCGGTGGCCCCGATATCACCGACCTGGCGGATAAGATCCGGGCCTGTGTAGCAGTACAGGTGAATGAGGATGATGAGCTGCCGACGCGCGTGTGCGCCAAGTGCCTGGACAACGTCAATAACTGGCATCTGTTCAAGAAGGTGTGCGAAAGGTCACAGGCCAAGCTCGAAGTATTGAAGAAAAAAGACAGCGACCAATTGGAGCGTCCACTGAAGATAAAGAGTGAGCCCCTGACTGATGAAATCTATGATGATGGAGTGGCCATCGATGCTGCCTACCCTGATTATGAGCAGAATTCATCACGCAAAATTCAGCCGGAAGGACCGCCCATCCTGGCATCTCTGGGACTCGCTCCTAGAAATGAAAAGAAAATAGTGGACCCACGCTTGGATTGGCACCGAGTGGAGGCAATACTGAACCTAGTCCAAGACGATGAAGTGATCGATGCTTTGCAATCGGCCGAAGAAATGGATAATGTGCAATATTCTGAACACGAATCTGATAGTGAAGGTGACCTCATTTCTAACATAGAAGATGAATATATGGATAACAAGGAAGGCTACTTGTCAAGGGATCGTGGGATGCTCGCGCGAATGCCTAAATTATCAGTTGCCGACCACAGTGCTAAGACGAGACTGTCGTCTCACATTAAAAGATCCAACCCCGCCGACAAATTGCATTTTCCACAACCGCAGCACGCTTGGAAAGTTTTCTTCACAAAGGAGATGCTCGAGTACATTGTTGAGTGCACCAACGATCACATCTTGACGACGAACGATGCAGAGCAATGCACCTCTGTCGCTGAACTCGAAGCTGTCATTGGCATTTTGTATTTACACGGTGTTTCGAGGGCTTTTTACCATCAGAGGTCAGATATGTGGGCGGAAGGGATCGGCCTGCCTGCGGTGGTGGACGCGATGCCGCAGGAGCGATTCCTTCATATTCTCGAGAATTTGAAATTTGAAAAGGAAGCTCTCGTGAGCGACTCTCAGTATGATTTGCTGAAACCTATTCGAACAATATTCGAACGGTTCACCCTCAACTGTCGTTCCAGCTACGAAGTCAGCTCTCACGTCGTCGTCGATGAAAAGATTGAGGTTATCTTTGGGCCGTGCCCGTTTCGAACTAACTTGGTAAACAAGCCTCTGCACTGCGGCATAAAATTTTTGACACTAGTAGATTCGGCGACATTTTACGTCAGCAATCTGGACATCATCACGGATAGAACGGCGATATCTCGACCGGACAGCGTAAAGAAACTCATTCAACACTTGGTCGGTTCAGGAAAGACAGTGGTCATGGACAGCTGGTTCACATCGGTGGACCTGATCCGAACGCTGCTGAAGGAGTACCGACTGTACTGCATTGCGGCGCTGCGACCTTCCGACCATTTAATTCCTCCATTTTTTATTTCGCAACACCGCGGTGTGAGAACTTTCATGACTGCTTTCGTCGATTCAGACATAGCCCTGACCTCGTTCGTCAACTCTGAGAGAAAGGTTATCAATGTGCTCTCGTCTCACCCAAGGCACTACAAGCGAATTAGCTCGGACAAGAAAACGCCCGTGTCGCAGTACAAGCAACATCAGTCGGCGGGCGAAGTGCTGGACGTGTTGACAAGTTACTACACGACATCACAGCACACAAACAGTTGGGCGCTGTCCTTGTTCTTCAAGCTGCTCGACATCGCGTCAATAAACGCTCAAGTGCTGTGGCTGTCGCGGCGTGGGGAAACTGTGGTGCATCGCAACGTATTTATACGCGCCGTGGCCTTAGGCCTTCTGGAAGAGTCGCGCAGCAAATCTGACAACGTCGTAGCCGAAGATGCTCCCTCGGCTAGCAGCTCAAAGAGAGCGAAATACACCAGGGATTTGATCACTTCGGGATATTGTAGACTCCGCTGCAAGTTGTGCGTCAGAAGCAAACGAGATCGCAAGACTAGAGTTACAGTGGAGAGCGAGAAGGAGGAAGAGGAGGATGAGGAGGAGGAGGAGGAGGAGGAAGAGCGTGATCGGCGCGAGCGGCGCGCAGAGCGGCGCCGGATGCGCTACCTTTCACCGCCCACCATCCCCGAGGTCTCCGTCACCGTCATGCGCCCCACCGGCGAGACCCTCCACGCCCGCCAGGGCATTCAGCAGCTTGCCTCCAAGAACTGCCTCGTCTGCGGCCGTGCCTACCGCTACTCGCACAACGCGCGGCGCCACGAGCTCACAGCACACTGCTTCGACCGCTACACCAACAAAATCAACAAGAACCTCAGGCCCAACCACCAAAAACTACGCCCCAACCCCTTCAATCCCAAGGCGCGCCTCATGCCCAACCCGATCAACCCCAAGATACAGTTCATGCCCAAGTCCATGTCCAAAATGCATCACTACCCGATACAGCCAAAGCATCTGCCCAAAAATAACTTTCCGTATCCGCTGAGAATCAAAGCGCTGACCGACCTGCAAGTGAAGAAGAAGGAACCTGAAATTTTGAAATCACTGCTCACGGCTAGAGCGAAGGCGATGGTGCATGAACCAGATATCATGAATTCTGGACCCGAGAGCCCGGAAACTTTAATTTCAGAACCGGAGATAGCTTCGTTCCAGGTGGAGGCTATCATCACTGAGCCCGATGCCTTCATCAACGACGAGGAGAACGAAGAGGACATGGACGCCGAGGACCAGACCCCTCACAATTCTTATGACAAAGTCCACATGGAGTCTGACCATGAAGTAGAAATCGCCGCTCAGCAGGATTTGTCTAACGATTCCCGCTCGAAGGAGGAACAGAAACAGGACAACGGTGAAATGGAGCAAGAAGGAGATGAACAGAACGATGGTCCTGACAACGACGAGGACGCCTACGAGGAAGTAATCCCTGATCAGGATGCGAGATCCGAAGGCAAGGACAGCATCAGAAGCAACACTGAGGCCATTATCGAGAACGGCATCGGCGAGCACGACGCCGATGAGACAGAGAACGATATGGAGGAAGGAGCAGAGGATGGAGATAATGCGGGAACAGTGGAAGAGCAAGGGGAGGACTATGACGAAGAAATGCCACCCATTGCACCCATAGTGGAGATAAACGAGGACCCGCACACCACATCCTATACCAGTGAGATGGCCGAGGAGGAGGAGGATGACTCGGCTGAGCTCAACGACACCGCCGAGGAGCCGTCCCTCATGGAGCCCGCCCGGGTCCTCGATCCCTCAAAACAGTACCTCACCAAGAACCAGAGAGAGTTTATTGAAAAACACCGAGACATAATTGAACAGATCAATACCAAAAAGTGCAAATGCTGCGACAAGGTGCATCCCAGGCGAAAAGCTGTCATCCAGCATCTGCAGAAGAATGGCCACAAGGTGCCTAAGCACACCTGCTACAACTGCGTAGTGACTTTCGGACATATTGGTGCTCTGCTGAGCCACATGCGGGCCAACGTGTGCACCAACTTGTGGAAGATGATATACAGCGAGGACGGCATCCCCGACGATCTCATTATAGAGGAGGAGGAGATCAAGGAGCCGGAGGTGCCGGTCAATCTGAACAAAGTTCAGTACAAGGATATCCTCAACTCGAGATCTTACGCCTGCAAGCTGTGCTCCGCCAAGTTCCAGCTGAAGCAGTTCATCATGAAGCACGTGCTTGACGTGCACGAGGACGGTCAATCTCGAGTGCCACTCGCCTGCGTGCACTGCGGCTACCGCTTCAAGGAGAACCGACTCTGGAAGAAGCACATCCGCAACGGTGAGTGCACGGTCAACATCGCCTGCGACCTCTGCCCCGAGAAGTTCCTGTCCATCCTTGAGTTCAACGATCATGCGCTGGCGGTGCACGCGGGGAGCTTTGACTCCAATGACGGTCAGTCCAAGCAGGTCGACAGCAGACCCAGCGATTGCCCCATCTGCCAGAAGTCCCACTCGAACTATCACAACCTCATCAAACATCTGAAGGCGATTCACAATGAAGAGAAGCCGCACTACTGCCAACACTGCGATGCCAAATTCGAGGGCACCGGTGATCTCAATCAGCACATCTACATGGAACACTCAGACAGGTCGGCTGCCAACCAAGCACCCGACCTGAGCATTGTGAAGGAGGAGGCGGAGGAGTATCACTATTCGTGCACCGAGTGCAACTCCATATTCGAGACGGTCGATGCGTGGACTGATCACCAGGTGGCGGAGCATAATCAGGTGGCGCACCACTGTGACCAGTGCGAAAAGAAGTTCCTGCGACCCTCCGAGCTCGCCGAGCACAAGAACACCCACCTCCGCGTCAAGTACTACTCGTGCAGCGTCTGCACCAACTCCTACAGCAGTCCGCAGAAGCTGTCAGACCACGTGCAGCAGGCGCATCCGGGAGTCTCCGCCTCCCTCAGTTCTTCCCCCGACAATCAGTTCTTCTGTGAGCTCTGCATCCGCGGCTTCAAGAGTCGACAGGCCTACTCCAATCACATGCGTATTCACGCCAAGGTTCCCACCACCAACAGGAAGCCGGGCGATCCCAAGGGCTCGATTATACAACCGACGACGGCCGGGAAGCCAATTCGGCAGACGCCGATCTCTCAATCGGCCGGCGGTTACGTCTCCTTCAAGTCCAACTACAACATTCCCAACGCTCCCTACTCGTGCGACATCTGCGGCAAGGGCTTCATGCACAAGAAGAATATCTGGAAGCACAAGAAGGTGCTGCACGCCGACATTGTCGGTGAGAAGGCTGACAGCGAGGAGAATACCATGCAAGCCTCCACCGAGGGCGAAGAGGAGTACCCCGCAGATGCGAATGGCACCGGCCTCTCCATCCCGCAGTTCAACAGCTTCAACTTCACCAACTACGCGCAACCCGCCGCCGCCGTCGCCCTCAAGCAGACTGACGGCCTTCCCTTCTCCTGCGAGATTTGCTTCAAGAAGTTTCCGCTGAGGACGAGCCTCTGGAAGCACAAGCGCGCCAAGCACGGCATCATCAACGCCAGCGCGCAGGACCCGCACCATCAGCCCGGTTCGGGTGAGTCCGGCGGCGGCGGCCGCTCCAGCTGCACCATCTGCAAGATCACCTTCGCAGATAAGAAGTCCTACTACCGGCACCGCAAGAACGTCCACAAGTCTAACGTGCAGATGTGCAAGATCTGCGGCAAGCCTCTCAACTCCACCCTCGAGCTGTACGAGCATTTGAAGGCGGCGCACGCGCGCGAGCTTCTCGGCTACAACGCCAACGCGCCCAAGTTGCAGGAGCCGCCGTCGGGCAGCCAGGACTACGGTTACCTGACAGAGGAGCGCGACGACCCCGCCGACGGTGACTACCACGCGCGCTACCCCTGCGACACCTGCGGCAAACAGTTCGTGGGCATGCTCGCGCTGCAGAACCACCAGTGCCTGCAGGATCCCTCCCAGCCCTCCACTTTCGACTGCGAGATCTGCCACAAGAGCTACACCTCCATATCTGCCCTCAAGAGTCACCGCGGCTGGCACTTACGCTCGCCCGACGGCAAGGCCGCCGCCAATAACTCGGGTCTCTGGATGCCCCACCACAAGGTTACCAACAAGCACAGTAAACACGAGGTGATGGAGCCTTCGCCGCTCACACGCTTCCAGAGCGCCATACCCCCCTCGCTAACAGTCACCAAGCGGCGCCTCCCGCCCGAGGTAGAGGTCACCGTCGTCAACCCCAATAAGAAGATCCGCTCGGACGACTCGGTGTCGGAGGCGGAGGTGCTCTCGCACCTGGCGCAGCGCTCTCAGGCCGCCGCCGAGCCAGACGAGCGCTACTGCTCCCTCTGCGACAAGGAGTTCACCAAGAAGGCCGCCTACCAGCGCCACATGGACGAGGTGCACCGCCCCAACTCTGTGTTCTGTCCTGTCTGCGACAAGAGCTTCACCCGCAAGTCCACTCTCCTCGTGCACATGCGCAAACATTACGAGGGCGGCGACGGCGCCGGCGGCAGCACCGAGCCCGTAGCCGGATCCTCCACCGACCCCGATGGCGAAGTTCACGCGTGCGACCTGTGCGGCGCGCAGTACCGCACGAGCAAGGCGCTACGTCTACACCGCGCGCGCCATCACGGCGAGGACGAAGAGGACTCGGAGGAGGAGGCCGCGTCGGCCGCCCCGCCCGCCGCGCCCGGAGAGTTCACCTGCAACCAGTGCGGCGACGGCGTGGCCACCCCGCGCGACCTCCTTGCGCACCGCACCATGCACGCCACACCCACCAAGTTCTTCTGCCACATCTGCAAGGTGTACTTCCCGCGCGCGCTCGACCTCTCCTCGCACACGCGCGCCCGGCACTCGGACAACGAGAAGGTGTTCTTCCCGTGCGCAATGTGCGACCGCTTCTACATGAATAAGAAAAGCTTGCAGCGCCACATCGAGACGTCGCACTGA
- Protein Sequence
- MSASVSCDALCRLCLSSRGRLLPIFGGPDITDLADKIRACVAVQVNEDDELPTRVCAKCLDNVNNWHLFKKVCERSQAKLEVLKKKDSDQLERPLKIKSEPLTDEIYDDGVAIDAAYPDYEQNSSRKIQPEGPPILASLGLAPRNEKKIVDPRLDWHRVEAILNLVQDDEVIDALQSAEEMDNVQYSEHESDSEGDLISNIEDEYMDNKEGYLSRDRGMLARMPKLSVADHSAKTRLSSHIKRSNPADKLHFPQPQHAWKVFFTKEMLEYIVECTNDHILTTNDAEQCTSVAELEAVIGILYLHGVSRAFYHQRSDMWAEGIGLPAVVDAMPQERFLHILENLKFEKEALVSDSQYDLLKPIRTIFERFTLNCRSSYEVSSHVVVDEKIEVIFGPCPFRTNLVNKPLHCGIKFLTLVDSATFYVSNLDIITDRTAISRPDSVKKLIQHLVGSGKTVVMDSWFTSVDLIRTLLKEYRLYCIAALRPSDHLIPPFFISQHRGVRTFMTAFVDSDIALTSFVNSERKVINVLSSHPRHYKRISSDKKTPVSQYKQHQSAGEVLDVLTSYYTTSQHTNSWALSLFFKLLDIASINAQVLWLSRRGETVVHRNVFIRAVALGLLEESRSKSDNVVAEDAPSASSSKRAKYTRDLITSGYCRLRCKLCVRSKRDRKTRVTVESEKEEEEDEEEEEEEEERDRRERRAERRRMRYLSPPTIPEVSVTVMRPTGETLHARQGIQQLASKNCLVCGRAYRYSHNARRHELTAHCFDRYTNKINKNLRPNHQKLRPNPFNPKARLMPNPINPKIQFMPKSMSKMHHYPIQPKHLPKNNFPYPLRIKALTDLQVKKKEPEILKSLLTARAKAMVHEPDIMNSGPESPETLISEPEIASFQVEAIITEPDAFINDEENEEDMDAEDQTPHNSYDKVHMESDHEVEIAAQQDLSNDSRSKEEQKQDNGEMEQEGDEQNDGPDNDEDAYEEVIPDQDARSEGKDSIRSNTEAIIENGIGEHDADETENDMEEGAEDGDNAGTVEEQGEDYDEEMPPIAPIVEINEDPHTTSYTSEMAEEEEDDSAELNDTAEEPSLMEPARVLDPSKQYLTKNQREFIEKHRDIIEQINTKKCKCCDKVHPRRKAVIQHLQKNGHKVPKHTCYNCVVTFGHIGALLSHMRANVCTNLWKMIYSEDGIPDDLIIEEEEIKEPEVPVNLNKVQYKDILNSRSYACKLCSAKFQLKQFIMKHVLDVHEDGQSRVPLACVHCGYRFKENRLWKKHIRNGECTVNIACDLCPEKFLSILEFNDHALAVHAGSFDSNDGQSKQVDSRPSDCPICQKSHSNYHNLIKHLKAIHNEEKPHYCQHCDAKFEGTGDLNQHIYMEHSDRSAANQAPDLSIVKEEAEEYHYSCTECNSIFETVDAWTDHQVAEHNQVAHHCDQCEKKFLRPSELAEHKNTHLRVKYYSCSVCTNSYSSPQKLSDHVQQAHPGVSASLSSSPDNQFFCELCIRGFKSRQAYSNHMRIHAKVPTTNRKPGDPKGSIIQPTTAGKPIRQTPISQSAGGYVSFKSNYNIPNAPYSCDICGKGFMHKKNIWKHKKVLHADIVGEKADSEENTMQASTEGEEEYPADANGTGLSIPQFNSFNFTNYAQPAAAVALKQTDGLPFSCEICFKKFPLRTSLWKHKRAKHGIINASAQDPHHQPGSGESGGGGRSSCTICKITFADKKSYYRHRKNVHKSNVQMCKICGKPLNSTLELYEHLKAAHARELLGYNANAPKLQEPPSGSQDYGYLTEERDDPADGDYHARYPCDTCGKQFVGMLALQNHQCLQDPSQPSTFDCEICHKSYTSISALKSHRGWHLRSPDGKAAANNSGLWMPHHKVTNKHSKHEVMEPSPLTRFQSAIPPSLTVTKRRLPPEVEVTVVNPNKKIRSDDSVSEAEVLSHLAQRSQAAAEPDERYCSLCDKEFTKKAAYQRHMDEVHRPNSVFCPVCDKSFTRKSTLLVHMRKHYEGGDGAGGSTEPVAGSSTDPDGEVHACDLCGAQYRTSKALRLHRARHHGEDEEDSEEEAASAAPPAAPGEFTCNQCGDGVATPRDLLAHRTMHATPTKFFCHICKVYFPRALDLSSHTRARHSDNEKVFFPCAMCDRFYMNKKSLQRHIETSH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -