Basic Information

Insect: Nematopogon swammerdamellus
Gene Symbol: -
Assembly: GCA_946902865.1
Location: CAMPPV010000181.1:1097463-1107413[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.088 6.6 8.3 0.3 3 23 184 204 183 204 0.84

2 12 0.00026 0.02 16.2 0.0 1 23 214 236 214 236 0.96

3 12 2.3e-05 0.0017 19.5 1.9 2 23 241 262 240 262 0.97

4 12 0.00046 0.035 15.5 3.8 1 23 268 290 268 290 0.98

5 12 5.8e-06 0.00044 21.4 1.4 1 23 299 321 299 321 0.97

6 12 0.00011 0.0086 17.4 1.6 1 23 327 349 327 349 0.99

7 12 3.4e-05 0.0026 19.0 6.3 1 23 355 377 355 377 0.98

8 12 5.5e-08 4.2e-06 27.8 0.3 1 23 383 405 383 405 0.98

9 12 1.4e-05 0.001 20.3 1.0 1 23 411 433 411 433 0.98

10 12 0.002 0.15 13.4 1.4 1 23 439 460 439 460 0.97

11 12 0.00018 0.014 16.7 2.2 1 23 466 488 466 488 0.98

12 12 0.093 7 8.2 0.1 1 23 494 516 494 516 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.088	6.6	8.3	0.3	3	23	184	204	183	204	0.84
2	12	0.00026	0.02	16.2	0.0	1	23	214	236	214	236	0.96
3	12	2.3e-05	0.0017	19.5	1.9	2	23	241	262	240	262	0.97
4	12	0.00046	0.035	15.5	3.8	1	23	268	290	268	290	0.98
5	12	5.8e-06	0.00044	21.4	1.4	1	23	299	321	299	321	0.97
6	12	0.00011	0.0086	17.4	1.6	1	23	327	349	327	349	0.99
7	12	3.4e-05	0.0026	19.0	6.3	1	23	355	377	355	377	0.98
8	12	5.5e-08	4.2e-06	27.8	0.3	1	23	383	405	383	405	0.98
9	12	1.4e-05	0.001	20.3	1.0	1	23	411	433	411	433	0.98
10	12	0.002	0.15	13.4	1.4	1	23	439	460	439	460	0.97
11	12	0.00018	0.014	16.7	2.2	1	23	466	488	466	488	0.98
12	12	0.093	7	8.2	0.1	1	23	494	516	494	516	0.97

Sequence Information

Coding Sequence: ATGGCACAGTTTGTAAGCGAGCTGGACGACCTGGCACATGGGCGTGGGTGTGCCGAGCCGGGCGACGAGGAGCTCGTTCAGATCGAGATCCCCGCCGAGCTGGCCGAGTTCCTATCCACCGGCGGCAGCGGCGCGGAACCAGACAACGCCGCCGGTGGCGTGCAGAGGTTTTGCCGCGTTTGCTTGCACGCAGCCGGGCCCTCAATGACCTGCATCTTCAGCGGAGCTAACGACGACCAGATAGCCTTCATGTTGAGTACTTTTACTCGCCTGCAGTTGGTTTCAGGTGACGGTATGCCATCCAAGGTATGCACTGGCTGCCGAGAGCTTATAATCCAAAGCTACTCATTCAAGCAGAAATGTGAGAGATCCGAGACAGCATTGAGAGCTTTTCTTCAAGGAGACATTATATATAACATCAAATCTGAGATGGATGATTTAAATGTTAAAACGGAAGTTGATGTTAATTTTAAATCTGAAGAAGATGTCAATGTGCTTGTGCAATCTAAGGGAGCAGCAAACAATTCTCACAAGAAACAAAAACCAATGTGCGGGGTGTGCAACAAAACTTATAAGGACAGAGGACTACAGCGACATATCCTTTTGGTACATGGCGGCGAACCTGAGAGTGACAGACCGTTCAAGTGTCCACAGTGCGGGTCAGCGTTTGTCACTGCCAAGGATTTGATGATTCACTCTGCCGTGCATTCTGATCTGTTGTCCTGTAATGAGTGTCGAAAGGAATTTACTACACTGCTACAATTAAAAAGGCACATCAAGAGACACATGGATGAAAAGCCACACAAGTGCGACATTTGTGCCAAGACATTCTCAGAAGTGTTTGCTCTGCACCGGCACCAGCGGAGTCACTTCGGAACTGCCGTGGAAAAGAAGCATGTCTGCACCGACTGTGGTAAAAAGTTTGCGGAGAAGTCATCGCTGACAGTGCACAGCCGGCTGCACACGGGCGAGCGGCCGTACGTGTGCACGCGCTGCGGCAAGAACTTCCTCTCCACTCGCCTCCTCAACTCGCACATGCGGACCCACTCCGACCACAAGCCGCACAAGTGCAAGCTATGCGATAAGAGTTTCCGGCACACGGCGACGCTGGCGACACACCGCCGCACGCACACGGGCGAGAGACCCTACGTCTGCAGTGCGTGCGGCAAGACCTTCATCCAGAGCTCCAACCTCACGCTGCACATGCGAGTCCACTCCGGCGAGCGTCCGTACTCGTGCAAGGTATGCGGCAACCGGTTCACGTCATGGTCCACCATGAAGTCTCACGAGCGCATCCACACCGGCGAGAAACCCTACAGCTGCAAGATATGCAACCAAAGATTCGCCCGCATGGACATGAAAGCGCACATGCGCCGGCACACCGGCGAGAGGCCCTACACCTGCACACTCTGCGACAAGTCCTTCTTCACGTCCGTGCGTCTCAACCAACACAGCCGACTCCACTCCGGAATTAAACCGTTCGAATGCGGGCTGTGTGGTCTAAAAATGGGTGCAAAGTCTGCTCTACTGCGACACGTGAAGCGGCACCGCCTCGGAAACGTGATCAAGATGAGTGGATCGCACAAGCCGAAGCCCTACAACATCCTAAACATCGAATTGAACCAGAACGAGTCGACTGAGACGAGCGCTCTGCAGATCTGCGACTACGTAGATGGAACCGAGACTGTGATCGATCAGAGCGGTGAGAGCAAGGTGGAAGTGGGAAGAGAAGCGTCGATGATTATTCCAGATCTTATGGACGCTCTCCCTCAGACAGTGAAGGTGGAGACGACCAGCGAAAGTCCCGCCCCAGCCCCCACCGTTGCACTACCTCCTCTCGGCTCCTCGCTTGCTCCGCGCGGCCGGAGGCTAAGCGTCTTCCAAATACGCAGCTCGGGAGGTCAGATCATCATGAGCAAAGCCCCGAGCACCATCGCCACCGACTGA
Protein Sequence: MAQFVSELDDLAHGRGCAEPGDEELVQIEIPAELAEFLSTGGSGAEPDNAAGGVQRFCRVCLHAAGPSMTCIFSGANDDQIAFMLSTFTRLQLVSGDGMPSKVCTGCRELIIQSYSFKQKCERSETALRAFLQGDIIYNIKSEMDDLNVKTEVDVNFKSEEDVNVLVQSKGAANNSHKKQKPMCGVCNKTYKDRGLQRHILLVHGGEPESDRPFKCPQCGSAFVTAKDLMIHSAVHSDLLSCNECRKEFTTLLQLKRHIKRHMDEKPHKCDICAKTFSEVFALHRHQRSHFGTAVEKKHVCTDCGKKFAEKSSLTVHSRLHTGERPYVCTRCGKNFLSTRLLNSHMRTHSDHKPHKCKLCDKSFRHTATLATHRRTHTGERPYVCSACGKTFIQSSNLTLHMRVHSGERPYSCKVCGNRFTSWSTMKSHERIHTGEKPYSCKICNQRFARMDMKAHMRRHTGERPYTCTLCDKSFFTSVRLNQHSRLHSGIKPFECGLCGLKMGAKSALLRHVKRHRLGNVIKMSGSHKPKPYNILNIELNQNESTETSALQICDYVDGTETVIDQSGESKVEVGREASMIIPDLMDALPQTVKVETTSESPAPAPTVALPPLGSSLAPRGRRLSVFQIRSSGGQIIMSKAPSTIATD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -