Nswa016197.1
Basic Information
- Insect
- Nematopogon swammerdamellus
- Gene Symbol
- -
- Assembly
- GCA_946902865.1
- Location
- CAMPPV010000535.1:2295-15414[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 25 0.011 0.83 11.1 0.0 3 20 10 27 8 30 0.91 2 25 0.11 8 8.0 0.2 1 23 35 58 35 58 0.95 3 25 5.2e-06 0.00039 21.6 1.6 2 23 98 120 98 120 0.97 4 25 0.001 0.078 14.4 1.8 1 23 126 149 126 149 0.97 5 25 6.1 4.6e+02 2.5 0.1 2 10 155 163 154 165 0.88 6 25 1.7 1.3e+02 4.2 0.8 2 23 248 270 247 270 0.94 7 25 1 77 4.9 0.1 3 23 293 314 291 314 0.91 8 25 0.0025 0.19 13.1 0.1 2 23 319 341 319 341 0.92 9 25 0.00077 0.058 14.7 2.2 1 23 346 369 346 369 0.95 10 25 0.26 19 6.8 0.2 2 12 409 419 408 423 0.84 11 25 1.4 1.1e+02 4.5 0.1 2 23 482 504 481 504 0.93 12 25 0.028 2.1 9.9 0.2 3 23 527 548 525 548 0.91 13 25 0.0016 0.12 13.8 0.1 2 23 553 575 553 575 0.92 14 25 0.00093 0.071 14.5 2.6 1 23 580 603 580 603 0.95 15 25 7.3e-07 5.5e-05 24.3 0.3 2 23 643 665 642 665 0.93 16 25 0.0011 0.086 14.2 0.3 1 23 671 694 671 694 0.98 17 25 6.8 5.2e+02 2.3 3.8 2 23 700 722 699 722 0.93 18 25 0.0057 0.43 12.0 0.0 2 23 809 831 808 831 0.96 19 25 0.041 3.1 9.3 0.3 1 23 853 875 853 875 0.97 20 25 0.0029 0.22 12.9 0.1 2 23 880 902 880 902 0.93 21 25 0.0036 0.27 12.6 5.0 1 23 907 930 907 930 0.96 22 25 0.015 1.1 10.7 0.9 2 23 970 992 970 992 0.94 23 25 0.078 5.9 8.4 2.7 1 23 997 1020 997 1020 0.92 24 25 6.7e-05 0.0051 18.1 0.1 2 23 1026 1048 1025 1048 0.96 25 25 0.11 8.5 7.9 5.5 2 23 1056 1078 1054 1078 0.90
Sequence Information
- Coding Sequence
- ATGGAAACGCACTTCGCCTCGATCATCTGCGAGGTGTGCGGCCGCGGATTTATGGATATAAAACAACTGAAACTGCACATGCCGATACACGCGAAGAAATCGTTCATATGCGAGACCTGCTCGGCGCCCTTCCCGAGCGAATCTCTCAAGCGGAAACACGTCAACTACATTCACAAGGGCATCGGACTCCTCAAGTGTTGGATCTGTCCCGGCGACATCCGATTCAAGGATCACCACAAAAAACTCGATCACATGGCGGAGTTTCACAATGCGGAGAAGCGACCGACGCCGACTTGCCCCGAATGCGGGAAGACCTTTAAGCACAACTCCTCCGTAATGGTGCACGTGAGGAAGATGCACCGCAAATTGAAATCTCATAAGTGCAAGGAGTGTCAGGAGGGTTTCGACAAAAAAAGAGACTTGGATTCTCACATCCGATTGATGCACACCGGTGAAAGACTTCCGTGCCCTCACTGCGAGAGGTCCTACATAGGTTTGCAAATCGGCCGCGTCAAAACTGAACCCAAGGGCGTTCATCTCTCCGTCGCGGTGCTGCGACACAGCAATGTCACGCCTTTTTTCGTGAGCCGCTACGATCTGATCCGATGTATCTTCAACTGCTCAATAGACTTCAAACTCGACACGCTCAGAAAGCACAACCAGGAATGTCACTCTGATCAAATGATCCGCGCCATCACGAAAGTCGACCGAAGTGTCATTAGAGTGGACACCACAGATCTCGAGTGCACGATTTGCGGCGATCGTATTGCAAATCTGAACTTATTGAAATCGCACTTCAATTCCTGTCACAGCATAATGACCTTCATCGACACCGCAGACGTTCTAGTACCGTACAAACTGAGAGAGCGGCACTTGTGCCAGATCTGCGGCGAGGAGTCTGGCACCTTCCAACTGCTGGACGCGCACATGGAGGCGGCGCACTTCCCTCTGAACGTCTGCGAGGTCTGCGGACGCGGGTTCATGAGTGCAGTTAAACTCAAGCGGCACTGGACCAACGAACACGCGGCGAAACCGTTCGAGTGTGAAGTCTGCCAGGCGAAATTTAAAACGCAACATTTGATGCGAAGACACATCGAGTACACGCACATGGGGATCGGAGCGCACAAGTGTCGGATGTGTCCCGGAGACGTCAGATTCATGGATCACTACAAGAAATTGGACCATATGGTGAAGGTGCACAACGAAAAGAGGCAATCATTGTGGAAATGTCCACAATGCGGCAAGGAGTTTGTGTTACAACACAGCAACGCTACGCCATTTTTCGTGAGCCGTTTCCATCTTATCCGGTGTATCTTCAACTGTTGCGTTGACTGCAACCTCGACAAACTCAGGCGGCACACACAGGCGTTCCACTCCGATCACATGCTACGCGCAATCAAGGGCGAAGAGCGAAATACGATCAGATTGGACATAACCGATCTAGAGTGCACCATATGCGGCGATGCGATTCCAGATCTACACTTGCTGGAGCAACACTTCAATTCGTTTCACGGCATGGGCGCGTTCAGGGACACCGCAGACGTTTTAGTACCGTACAAACTCGGCGATCAGCACTTGTGCCAGATCTGCGGCGAGGAGTTTGGCACCTTCCAATTGCTGGACGCGCACATGGAGGCGTCGCACTTCCCGCTGAACGTTTGCGAGGTCTGCGGTCGCGGGTTCATGAGTGCAGCTAAACTCAAGCGGCACTGGACCAACGACCACGCGGCGAAACCGTACGAGTGTCAAGTCTGCCAGGCGAAATTTAAAACGCAACACCTGATGCGAAGACACATCGAGTACACGCACATGGGGATCGGAGCGCACAAGTGTCGGATGTGTCCCGGAGACGTCAGATTCATGGATCACTACAAGAAATTGGACCACATGGTGGAGGTGCACAACGAAAAGAGGCAATCATTGTCGAAATGTCCGATTTGCGGCAAGGAGTTTCGCACGTCGTCGCTGCTGAAGCGCCACGTGAGCGAAGTGCACGATAAGATGAAAGCGTACAAGTGCAAAACGTGCGAAGATCGCTTCAGGACCGCGATAGAGCTGGAGCAACACGTCAGAATCGTGCATAAGGGAAAGACGGTGTCGTGCTGCTACTGCCCCAAGAAGTGCTTGGACGTGAAGAAGCTTCTGAAGCACATGAGCTGGATGCACAGTTTGAAAATTTGGACAAGCAATTTTAAAAGCGTCAATACGGAGGGCATTCACTTCTCCGAAGCCGTGCTGAAACACAGCAACGCCACTCCCTTCGGCGTGCACCGCCGCAACGTGATCCGCTGCATCTTCAACTGCTTGCAACACTACGGCGTGGAAGACCTGAGGCAACACACGAAGAACGATCACTCCGGGCACCTCTACAGGGCGACAAAGAAAGACAATCAGACAACAATAAGGGTCGATATAAGCGATCTCGAATGCAATATATGCTATACTTCAGTTCCAGATCTGGACGCGCTGGAGAAACATTTAAATTCAGCTCACAGCATAAAAACATACAAGAACAGCGCCAACGTTCTTGTTCCCTACAGAATAAAAGCGAACACTTTCGCCTGTCAGCTCTGCGGCAGCGCGTTTATAGACATTCATCGTCTCGATCAGCACATGGACACACACTTTCCTCTTAACGTCTGCGAGGTCTGCGGCCGCGGCTTTATGGATCCGCTCGCACTCAAGAAGCACCTGACGAACGAGCATGCGGAGAAGAAGTTCGTCTGTCACATGTGCCAGGTGAAATTCACGACGGAACACCTGATGAAGCGTCACATCAACTACACGCACAAGGGAATCGGGGCGAACAGGTGCTGGAAATGCCCCGGCGAAGTCAGATTTCTCGATTACCGCAGGAAGATGCAGCACATGGTCCAAGTGCACAACCACGAGAAGCCGCCGACGCCGAAGTGCGCCAAGTGCGAGCGGGAATTTTGCACGCCGGCGATCTTGAGGCGTCACATGCTGGACATACACGAGAGGAAAGCGTTCAAGTGCACGACGTGCGAGTCGGAATTTAGAAGTACAAAGCTTCTCGAGCACCACACGACGCTGGTGCACGAGAGGAAGAGAGTGCCGTGCACTTACTGCGACCGGGACTACGCGAGCGCCAGCGAACTTTCGAAGCATATGTCGAAACTGCACAAGGGCGCCGAGAGGCGTTGTCCTTGTCGACATTGCGGTAAGCCCTGCGAGAACAGACTCAAGCTAATACAGCATTTGAAGTACGAGCACAATGAATAG
- Protein Sequence
- METHFASIICEVCGRGFMDIKQLKLHMPIHAKKSFICETCSAPFPSESLKRKHVNYIHKGIGLLKCWICPGDIRFKDHHKKLDHMAEFHNAEKRPTPTCPECGKTFKHNSSVMVHVRKMHRKLKSHKCKECQEGFDKKRDLDSHIRLMHTGERLPCPHCERSYIGLQIGRVKTEPKGVHLSVAVLRHSNVTPFFVSRYDLIRCIFNCSIDFKLDTLRKHNQECHSDQMIRAITKVDRSVIRVDTTDLECTICGDRIANLNLLKSHFNSCHSIMTFIDTADVLVPYKLRERHLCQICGEESGTFQLLDAHMEAAHFPLNVCEVCGRGFMSAVKLKRHWTNEHAAKPFECEVCQAKFKTQHLMRRHIEYTHMGIGAHKCRMCPGDVRFMDHYKKLDHMVKVHNEKRQSLWKCPQCGKEFVLQHSNATPFFVSRFHLIRCIFNCCVDCNLDKLRRHTQAFHSDHMLRAIKGEERNTIRLDITDLECTICGDAIPDLHLLEQHFNSFHGMGAFRDTADVLVPYKLGDQHLCQICGEEFGTFQLLDAHMEASHFPLNVCEVCGRGFMSAAKLKRHWTNDHAAKPYECQVCQAKFKTQHLMRRHIEYTHMGIGAHKCRMCPGDVRFMDHYKKLDHMVEVHNEKRQSLSKCPICGKEFRTSSLLKRHVSEVHDKMKAYKCKTCEDRFRTAIELEQHVRIVHKGKTVSCCYCPKKCLDVKKLLKHMSWMHSLKIWTSNFKSVNTEGIHFSEAVLKHSNATPFGVHRRNVIRCIFNCLQHYGVEDLRQHTKNDHSGHLYRATKKDNQTTIRVDISDLECNICYTSVPDLDALEKHLNSAHSIKTYKNSANVLVPYRIKANTFACQLCGSAFIDIHRLDQHMDTHFPLNVCEVCGRGFMDPLALKKHLTNEHAEKKFVCHMCQVKFTTEHLMKRHINYTHKGIGANRCWKCPGEVRFLDYRRKMQHMVQVHNHEKPPTPKCAKCEREFCTPAILRRHMLDIHERKAFKCTTCESEFRSTKLLEHHTTLVHERKRVPCTYCDRDYASASELSKHMSKLHKGAERRCPCRHCGKPCENRLKLIQHLKYEHNE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -