Basic Information

Insect: Nematopogon swammerdamellus
Gene Symbol: -
Assembly: GCA_946902865.1
Location: CAMPPV010001173.1:75521-116214[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 0.00018 0.014 16.7 0.1 3 23 567 587 566 587 0.97

2 13 5.4e-06 0.00041 21.5 0.7 1 23 593 615 593 615 0.98

3 13 9.8e-06 0.00074 20.7 2.7 1 23 621 643 621 643 0.99

4 13 0.00052 0.039 15.3 0.2 1 23 653 675 653 675 0.96

5 13 0.27 21 6.7 1.8 1 23 684 706 684 706 0.98

6 13 1.1e-06 8.3e-05 23.7 2.3 1 23 712 734 712 734 0.99

7 13 0.076 5.8 8.5 1.8 1 23 741 763 741 763 0.98

8 13 4.5e-06 0.00034 21.8 1.5 1 23 769 791 769 791 0.99

9 13 0.0037 0.28 12.6 0.7 1 23 798 820 798 820 0.99

10 13 1.3e-05 0.00099 20.3 2.5 1 23 826 848 826 848 0.98

11 13 0.0036 0.27 12.6 0.3 1 20 854 873 854 876 0.93

12 13 3.9e-05 0.003 18.8 1.4 2 23 883 904 882 904 0.97

13 13 6.4e-06 0.00049 21.3 1.4 1 23 910 933 910 933 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	0.00018	0.014	16.7	0.1	3	23	567	587	566	587	0.97
2	13	5.4e-06	0.00041	21.5	0.7	1	23	593	615	593	615	0.98
3	13	9.8e-06	0.00074	20.7	2.7	1	23	621	643	621	643	0.99
4	13	0.00052	0.039	15.3	0.2	1	23	653	675	653	675	0.96
5	13	0.27	21	6.7	1.8	1	23	684	706	684	706	0.98
6	13	1.1e-06	8.3e-05	23.7	2.3	1	23	712	734	712	734	0.99
7	13	0.076	5.8	8.5	1.8	1	23	741	763	741	763	0.98
8	13	4.5e-06	0.00034	21.8	1.5	1	23	769	791	769	791	0.99
9	13	0.0037	0.28	12.6	0.7	1	23	798	820	798	820	0.99
10	13	1.3e-05	0.00099	20.3	2.5	1	23	826	848	826	848	0.98
11	13	0.0036	0.27	12.6	0.3	1	20	854	873	854	876	0.93
12	13	3.9e-05	0.003	18.8	1.4	2	23	883	904	882	904	0.97
13	13	6.4e-06	0.00049	21.3	1.4	1	23	910	933	910	933	0.97

Sequence Information

Coding Sequence: ATGCGCGGGGCGGATCTCGGCGTGTCGCCGCCGCAGCGGTTCGTCAGTGTTCTCCCTCGCACCCGCACCGAAAATTCTAATTTCATGGAGAACGAGAACCCAAAGAAAACCATTTCAAAATATTTTTGCCGGCACTGCGAGTTGTACGCCAACTCTGACATTCAGCTGCGGGAGCACCTCAGGGGGCTCAATCACAAGCTTACTATGCTTAAACAGCACGAGGAGCTCGAACCTCCGGCGAGTAGCGCCGAATCGGCGCGACTACGCAGCGGGAACGGCGAGTCGGCGCGACTACGCAGCGGGAGCGACAAGGACGGCGATGACTCGTGCAGCGGATCCTTTCACTTTTACGCCGACACGGAAGCTTGTAATCTAGATGTACGCGAAGGAAGTACGAACGACGATAAGATTCGCGCCGCGAGCGAGCGACTCCCGCCGGCCGAGCGAGCCTGTGCGCTGCTCGCCGCTGGATGCGCGTTGCCGTTTCGTCGTCTATCAGCGCATGGGCTGATAGCGAAGAGCCTCGACGCCCACCTTCAGAGGCCCTCGCTGAGTGGTTGGGTCAAGGGTCAGATCCAGAAGGCAGCCCTGCTCGACACTGCGCGCATAGTCCGGAGGGTCTCCGGGGACCCGACCATCGTCACCATTAGTTTTCCGGCGCATTGGGGCGTGGGGGTCGGGGGCGTGACGCGGGGCGTGGGAGTCCCCGTGCCGCCCCCCGGCGACCTCCTCGCCACCATCTCCATGTTCGAGCAACAGATAAAGGCGGAGCCTATGAGCTTCTACTCGTCGCACGCGCACGTGCACAGCGCGCCGCCGAGCATCGTGCGCGGCGACGGCTCCAACCACGCCATCATCAACATCCAGCACGAGGACACCAAGGACAGCCTCATCGTGCAGCACCAGCAGCAGCAGCAGGAGCTGCTCGAGCAACACCAGCAGCAGCAGCAGGTATCTCGCTCTTCTTCTACTCGTCGCACGCGCACGTGCACAGCGCGCCGCCGAGCATCGTGCGCGGCGACGGCTCCAACCACGCCATCATCAACATCCAGCACGAGGACACCAAGGACAGGCTCATCGTGCAGCACCAGCAGCAGCAGCAGGAGCTGCTCGAGCAACACTAGCAGCAGCAGCAGGTATCTCGCTCTTCTTCTACTCGTCGCACGCGCACGTGCACAGCGCGCCGCCGAGCATCGTGCGCGGCGACGGCTCCAACCACGCCATCATCAACATCCAACACGAGGACACCAAGGACAGCCTCATCGTGCAGCACCAGCAGCAGCAGCAGGAGCTGCTCGAGCAACACCAGCAGCAGCAGCAGGTATCTCGCTCTTCTTCTACTCGTCCCACGCGCACGTGCACAGCGCGCCGCCGAGCATCGTGCGCGGCGACGGCTCCAACCATGCCATCATCAACATCCAACACGAGGACACCAAGGACAGCCTCATCGTGCAGCACCAGCAGCAGCAGCAGGAGATGCAGCAGCACGACCTGCGCGACCACGAGGACCACGACCAGAGCGAGCTTAATTTCAAGCCCATGGACGACGATGGGGTCGAAATGGAAATGGACAACAGGCAATGCTCTCAGGGCATGGTGAACATGGGCGCTGTGATCACGAAGCTGGAGCAGAGCGGCGTGGGCGGGCTGGGCGGCGGCGGGGTCGGGGGCGGCGCGCCGCGCAGCAAGCCGCAGGCCTGCAAGGTGTGCGGCAAGGTGCTCTCATCAGCCTCCTCTTACTACGTGCACATGAAGCTGCACTCGGGAAACAAGCCCTTCGCATGCACGGTGTGCGACgcggcgttctgccgcaagccgtacctggaggtgcacatgcgcactcacaccggcgagcgaccgttccagtgtgagctctgtctcaagcggttcacgcagaagtccagcctcaacacgcacaagcgcgtccacaccgGGTACTGGGCGGTGCACAAgccccacgcctgctccgcctgcccggccgccttctcgcgcaagccgtacctggacgtacacatgcgcacgcacacgggcgaacgaccctatcaaccgttccagtgcctgtcgtgtccggcggcgttcacgtgcaagcagtacctggagatccacaaccgcacgcacaccggcgagcggccctaccagtgcgacatctgtctcaagcgcttcacccagaagtccagcctcaacatccacaagcgcacccactcagTCCAGGGTcgcccgttccagtgcctgcagtgtcccgccgccttcacgtgcaagcagtacctggagatccacaaccgtacgcacacgggcgagcggccctaccagtgtgacgtctgcctaaagaggttcgcgcagaaatccaccctcaacatccacaagcgcacacacacagAgcaagggcggccgtaccagtgcatgcagtgccccgccgcgttcacctgcaagccgtacctcgagatacatatccgcacgcacacgggcgagcggcccttccagtgcgaccagtgcctcaagcggttcacccagaaatccactctcaacatccacaaacgcattcacaccgGTGAGCGACCGTACGCTTGCGACATCTGTCAGAAGAGGTTCGCGGTTAAGAGCTACGTCACCGCACACAGatggtcgcacgtggcggacaagccgctgacgtgcgaccgctgctcgatgacgttcacgtccaagtcgcagttcgcgctgcacatccgcacgcacacggcgggctcctgctacgagtgcagcgtctgcgGACGCACCTTCGTACGCGACAGCTATCTCATACGACATCACAACCGCGTGCATCGAGAGAACCACAGCAACGTGTCTGCGAATAGCATAGCCACCATCAACAGTGTCGCCACCAACACCCACCATCCCAATAATGCGTACGATTCACCCGGCGTCTGCGACCTCAGCTTCGTGCCGCTGGTAAACCGCTACATGACGTCGCAGGGCACGCAGGTGTCGATGCAGGACACGCAGAGCAAGATGTCCGCACTCTCGCCCGTCTCCATCGGCACCTCTATATCGTCGCCGCCGCCGCCGCACACTCCCACGCCGCAGCCGCAGATGTCGGGCCAGATGCATCTCAACGACTGA
Protein Sequence: MRGADLGVSPPQRFVSVLPRTRTENSNFMENENPKKTISKYFCRHCELYANSDIQLREHLRGLNHKLTMLKQHEELEPPASSAESARLRSGNGESARLRSGSDKDGDDSCSGSFHFYADTEACNLDVREGSTNDDKIRAASERLPPAERACALLAAGCALPFRRLSAHGLIAKSLDAHLQRPSLSGWVKGQIQKAALLDTARIVRRVSGDPTIVTISFPAHWGVGVGGVTRGVGVPVPPPGDLLATISMFEQQIKAEPMSFYSSHAHVHSAPPSIVRGDGSNHAIINIQHEDTKDSLIVQHQQQQQELLEQHQQQQQVSRSSSTRRTRTCTARRRASCAATAPTTPSSTSSTRTPRTGSSCSTSSSSRSCSSNTSSSSRYLALLLLVARARAQRAAEHRARRRLQPRHHQHPTRGHQGQPHRAAPAAAAGAARATPAAAAGISLFFYSSHAHVHSAPPSIVRGDGSNHAIINIQHEDTKDSLIVQHQQQQQEMQQHDLRDHEDHDQSELNFKPMDDDGVEMEMDNRQCSQGMVNMGAVITKLEQSGVGGLGGGGVGGGAPRSKPQACKVCGKVLSSASSYYVHMKLHSGNKPFACTVCDAAFCRKPYLEVHMRTHTGERPFQCELCLKRFTQKSSLNTHKRVHTGYWAVHKPHACSACPAAFSRKPYLDVHMRTHTGERPYQPFQCLSCPAAFTCKQYLEIHNRTHTGERPYQCDICLKRFTQKSSLNIHKRTHSVQGRPFQCLQCPAAFTCKQYLEIHNRTHTGERPYQCDVCLKRFAQKSTLNIHKRTHTEQGRPYQCMQCPAAFTCKPYLEIHIRTHTGERPFQCDQCLKRFTQKSTLNIHKRIHTGERPYACDICQKRFAVKSYVTAHRWSHVADKPLTCDRCSMTFTSKSQFALHIRTHTAGSCYECSVCGRTFVRDSYLIRHHNRVHRENHSNVSANSIATINSVATNTHHPNNAYDSPGVCDLSFVPLVNRYMTSQGTQVSMQDTQSKMSALSPVSIGTSISSPPPPHTPTPQPQMSGQMHLND

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -