Nswa032886.1
Basic Information
- Insect
- Nematopogon swammerdamellus
- Gene Symbol
- -
- Assembly
- GCA_946902865.1
- Location
- CAMPPV010001892.1:10521-33431[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.015 1.1 10.7 1.1 2 23 626 647 625 647 0.96 2 11 5.9e-05 0.0044 18.3 2.1 1 23 657 679 657 679 0.97 3 11 1.2e-05 0.00089 20.5 0.5 2 23 688 709 688 709 0.98 4 11 2.1e-05 0.0016 19.7 0.7 2 23 721 742 721 742 0.98 5 11 1.2e-05 0.00089 20.5 0.5 2 23 754 775 754 775 0.98 6 11 1.2e-05 0.00089 20.5 0.5 2 23 816 837 816 837 0.98 7 11 4.1e-06 0.00031 21.9 0.8 1 23 843 865 843 865 0.98 8 11 5.1e-05 0.0039 18.4 0.5 5 23 875 893 873 893 0.97 9 11 0.83 63 5.2 0.1 5 17 905 917 904 923 0.85 10 11 4.4e-07 3.3e-05 25.0 1.8 1 23 931 953 931 953 0.98 11 11 1.1e-06 8.1e-05 23.7 0.5 1 23 959 981 959 981 0.97
Sequence Information
- Coding Sequence
- ATGCGCGAGTGTCTGGCGCAGGGCGCGTGGTGCGACGTGCGGCTCGCGTGCGGCGGACGCGAGTTCCGTGCGCACCGCGTCGTTCTCTCCAGCGTCAGTCCCTTCCTTCGGGTGTTGCTGCAGTCTCGCCCGGACGAGGACATCCCGACTACAATCGTGATGCCGGAGGTCGAGGTGGAGGCGATGTCGGCCGTGCTGCACTACATCTACAACGGCGAGGTGTCGGTACCGACACATCTCCTGGATGCGTTTTTCACCATCGTCAAAACTCTGCAGATCTGCGTCGATAAGAAGGCTTTGATTAGGTTCAGGGAGAAAATAGAAGATTTCGACACCAAGATCCTAGACGTTGAAGTGTTTAAGAAGGCCATCACAACGAGGTTAATGCCGGCTCTGAAGAATTTGAACGATACGGGCGTCTCGATAACAACCTCAAAGAATACGGCAGGAGTCGTCGAAAATAAACAGCTCGACCTCGAGCACGTCATAAAGGGGGATAGAATATGTAAGAGTGTGTCCCCGTACCGTACCGAAGTCGGCTACAGATTGCGTCCAGAGGTCCGTTTGATTTCGCAAACCGAGAAACGGCAGAGACAGGAGTCGACGACGGTCGCACGTGTACTCGATCCGGGCCGCGATCGGCAGAGAGTTTCGCCTGAACGTGACTCGCCTCCGCACCACCGCCGCCGCCCTCCAACGCCACGCCGCCGTACTAACGGGCCTGCGACGTGCGTGTCGACAATTACAAACGACGACAATCTCGATCGGAAATCTTCGCCTGTGACGAATGATACCCTGTCAGGGTGGCAGACGACATTGCCGGCAGATTCAGCGGAGATTCTGAGCGGCGCGAGCTCGACGAGCCGCCCGTTACATCAAACAGATAGCGAGACGGGTACGACGGACCATCGAAAGAGACCGGAATACACCAAAAACTTAGTACCAAATATTACTTTTAGGAATACTAACCGTCTGCCGGCAGGAAACGTGACGGACTTCAATCCCGCCGCGAGATTACACGTCGTTGACAACTGGAGAGACGGAAATATTATAGATCCCAGGACAAGTCTGAGCGCTGGAGCCGACTCTGTACGGAAGCCGGCAGTGCTTCGTCCTGTGCCGACACTGTTGCCAATAGCTCCGATGTACAACCTTCCGCCGCCTCCTCCTGCGCCGATGGTCGAGCACGGCGGGTACTTCCGACCGCCACCCGATTTGTTGGATCTGTCGTCCGCCCATCTGGCTAGGCTCAATCTCCTTAGAGCTTCTTCGTCGGACGAAACGAGAATGACACTTCTTTCCACACATCTGAACGGGTATACGGTCGCCCGTTCTCTCCAGTGCAACCCGTTCAATTCTACATACCCGAGTAGGCTGTATACGACGAATGAGGATCCGACAAGACTCTCCGACAGCTTCGCGGAGGGAGAACGGATGATGGAGGAGGTCGAGCGCGACAGAACGCGGATGAGAAAAACTGCATACAATAAGGTGTTGGCGAGCCCGTGGTGTCCGCGCCTTCCTCCGACCTACCGGCCTCCGCCTCCCCTACATCCACCGCAGCGTTGCGCTCACAGGACACTTCCGCATCCTTCACAACTCAATCCGCCGTCAACAGGTTCAGAGATGAAGGAACAGCTGTTAGCCTCGCGTTCGCTTGTGCTTGACGACTGCGCCGAGAAGTTAAGCTCGAACGACGACAACAACAACGTACGAGAGGTTTCTTCATCCCCCGCTCCCGCGCCGTCCACTCCGCCCCTCGCTCCAGAGCCGCCCCTCGCTCCAGAGCCGCCCCACTCCGCCGCCGCCGTCGCTGTTACTCCTCACTCTATCGACATCATTATCGGCAAGGACTCCGCCAGTGGACAGGCCATGAGATGCGCCACATGCGATAAGGTGTTCACGTGTCGCGGGACGCTGGCGACGCACGTGCGCGCGCACGCGGCGGCCGCGGCGGGAGGCGCACGGCACACGTGCGCGGAGTGCGGGAAGAGTTTCTCGCAGCTGCGCAACTACAAGTACCACGTGAGCGTGCACCGCGGCACCCGCGAGTTCGCCGCCACCTGCAACGTGTGCGGCAAGTATTTCAACGACCGCGGCTACCTCAGCAGCCACATGAAGATACACAGCGTGCACCGCGGCACCCGCGAGTTCGCCGCCACCTGCAACTTGTGCGGCAAGTATTTCAACGACCGCGGCTACCTCAGCAGCCACATGAAGATACACAGCGTGCCCCGCGGCACCCGCGAGTTCGCCGCCACCTGCAACGTGTGCGGCAAGTATTTCAACGACCGCGGCTACCTCAGCAGCCACATGAAGATACACAGACCGCGGCTACCTCAGCAGCCACATGAAGATACACAGGTCAGTAGGGCGCAGGGCTACTCTCTGCGCAACTACAAGTACCACGTGAGCGTGCACCGCGGCACCCGCGAGTTCGCCGCCACCTGCAACGTGTGCGGCAAGTACTTCAACGACCGCGGCTACCTCAGCAGCCACATGAAGATACACAGGAACCGGAAGGAGTACGAGTGCCCGCACTGCCCTAAGTCGTTCAACCAGCGAGTCGCGTACAACATGCATGTCCGCATACATACCGGTGTGAAGCCGCATGTTTACGCTAAATGCGGCAAGGCGTTCTCCCGCAAGTTGCTACTGAAGCAGCATCAGCGCACGCACTTGAGCGAGCGTGTGAAGTCGCATGTTTACGCTGAATGCGGCAAGGCGTTCTCCCGCAAGTTGCTACTGAAGCAAAATCAGCGCACGCACTCGAGCGAGCGTGTGAAGCCGCATGTTTGCGCCGAGTGCGGCAAGGCGTTCTCCCGCAAGATGCTACTGAAGCAGCATCAGCGCACGCACTCGGGCGAGCGACCGTATGCATGTTCAGTGTGCGACAAACGCTTCGCAGACCGCTCCAACATGACCCTGCATATGCGCCTGCACTCAGCAGTACACGAGGTGTACCGTAAACGAAAATTTACGAAAATGAGCAATGCTATACAGTGGGTCGGAGCGTGGGGTAACCGAACCGTGGCGTGGCGTTGCGTAGCGGGGTGGTGTGGGGCGGCGCGCGGCGCCTGCGCGGCGGTATAG
- Protein Sequence
- MRECLAQGAWCDVRLACGGREFRAHRVVLSSVSPFLRVLLQSRPDEDIPTTIVMPEVEVEAMSAVLHYIYNGEVSVPTHLLDAFFTIVKTLQICVDKKALIRFREKIEDFDTKILDVEVFKKAITTRLMPALKNLNDTGVSITTSKNTAGVVENKQLDLEHVIKGDRICKSVSPYRTEVGYRLRPEVRLISQTEKRQRQESTTVARVLDPGRDRQRVSPERDSPPHHRRRPPTPRRRTNGPATCVSTITNDDNLDRKSSPVTNDTLSGWQTTLPADSAEILSGASSTSRPLHQTDSETGTTDHRKRPEYTKNLVPNITFRNTNRLPAGNVTDFNPAARLHVVDNWRDGNIIDPRTSLSAGADSVRKPAVLRPVPTLLPIAPMYNLPPPPPAPMVEHGGYFRPPPDLLDLSSAHLARLNLLRASSSDETRMTLLSTHLNGYTVARSLQCNPFNSTYPSRLYTTNEDPTRLSDSFAEGERMMEEVERDRTRMRKTAYNKVLASPWCPRLPPTYRPPPPLHPPQRCAHRTLPHPSQLNPPSTGSEMKEQLLASRSLVLDDCAEKLSSNDDNNNVREVSSSPAPAPSTPPLAPEPPLAPEPPHSAAAVAVTPHSIDIIIGKDSASGQAMRCATCDKVFTCRGTLATHVRAHAAAAAGGARHTCAECGKSFSQLRNYKYHVSVHRGTREFAATCNVCGKYFNDRGYLSSHMKIHSVHRGTREFAATCNLCGKYFNDRGYLSSHMKIHSVPRGTREFAATCNVCGKYFNDRGYLSSHMKIHRPRLPQQPHEDTQVSRAQGYSLRNYKYHVSVHRGTREFAATCNVCGKYFNDRGYLSSHMKIHRNRKEYECPHCPKSFNQRVAYNMHVRIHTGVKPHVYAKCGKAFSRKLLLKQHQRTHLSERVKSHVYAECGKAFSRKLLLKQNQRTHSSERVKPHVCAECGKAFSRKMLLKQHQRTHSGERPYACSVCDKRFADRSNMTLHMRLHSAVHEVYRKRKFTKMSNAIQWVGAWGNRTVAWRCVAGWCGAARGACAAV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01042801;
- 90% Identity
- iTF_01042801;
- 80% Identity
- iTF_01042801;