Nswa001928.1
Basic Information
- Insect
- Nematopogon swammerdamellus
- Gene Symbol
- -
- Assembly
- GCA_946902865.1
- Location
- CAMPPV010000052.1:250574-252991[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 2.2e-06 0.00017 22.8 1.8 1 20 7 26 7 28 0.95 2 21 0.00035 0.027 15.8 0.1 2 23 36 58 27 58 0.96 3 21 5.8e-07 4.4e-05 24.6 0.4 2 23 67 89 67 89 0.97 4 21 0.00094 0.071 14.5 1.3 2 23 97 119 96 119 0.93 5 21 0.00021 0.016 16.5 1.7 2 23 127 149 127 149 0.96 6 21 4e-05 0.003 18.8 2.8 2 23 159 181 159 181 0.97 7 21 1.7e-05 0.0013 20.0 1.6 1 23 188 211 188 211 0.97 8 21 0.58 44 5.7 4.0 1 23 247 270 247 270 0.88 9 21 0.00012 0.0091 17.3 0.9 1 23 275 298 275 298 0.98 10 21 0.063 4.8 8.7 1.3 1 23 327 350 327 350 0.97 11 21 0.21 16 7.1 2.4 2 21 358 377 357 378 0.92 12 21 3.2 2.4e+02 3.4 4.7 1 23 386 409 386 409 0.90 13 21 0.2 15 7.1 3.6 1 23 439 462 439 462 0.97 14 21 7e-05 0.0053 18.0 0.9 2 23 469 491 468 491 0.96 15 21 0.00015 0.011 17.0 2.2 2 23 498 520 497 520 0.94 16 21 0.00097 0.074 14.4 2.4 1 23 526 549 526 549 0.98 17 21 4.6 3.5e+02 2.9 3.9 2 23 557 579 557 579 0.95 18 21 0.0057 0.43 12.0 0.7 1 23 586 609 586 609 0.97 19 21 6.8e-05 0.0052 18.1 0.5 1 23 616 639 616 639 0.96 20 21 0.0051 0.39 12.2 2.7 2 23 652 674 652 674 0.96 21 21 1.7 1.3e+02 4.2 0.7 1 13 724 736 724 738 0.88
Sequence Information
- Coding Sequence
- ATGTCAGATCAAGATCGCTTTGAATGTCATGACTGCGGTAAAGTGTTTCACAGAAAATATAATCTCCGTTTGCACATTGACAACTGTAATCGAAACTTCAAAAGTTACTGCGACGTCTGCGCTCGTGCTTTCGGCAGCCCGAGCGGCCTTCAAAAGCACATGGCCAAGGGCCACAACACTGGGGATCTCTGCTTTCCGGAATGTGACTTATGCGGAAGAACCTTCACAAGGAAACAGAACCTCATATCGCATATGATAACCGTTCATTTAAGAGGCAGCCCTTGCATCCGTTGCGAACTATGCGCGAAGAATTTCTCATCCGAACGTAACTTAAAACGCCACAATAAACTGACGCATGATCCCAACACGCAGTTTCCGACGTGCAACGACTGCAGTAAAGTTTTCAAAGCCAAACATTCGCTGCTCGCGCACATACAGAACAATCACTGCAACGGATCGGAGGACAAGGTTGCAAAATGCGAAGTTTGCAACAAAATTTACACAAATCACAGGAATCTCAAGCGACATCTCGAGACGCTGCACGGGAATAAATTAAGTACATTCTCCTGCGAACTCTGCCCGAAAGTTTACACCTCGAATCAGAGTTTACGAAGGCACACGAAATCGAGACACGACCCCGATAACGTATTGCAATGCGCGACGTGCTGCCAGACGTTTCCTAACGAAATTGGCTTGGATTATCATGAGAAAATGTGCCACAAAGCACCGGAGAAGTTTTACAAATGCGATGATTGCGACAAATTGTTCTTGTTTCCTCACAAACTGAAAGAGCACAGCATCCTCTGTCACACTCACATGTTGCACCGGTGCCCGTTCTGCGAGAAACAGTTCATAGTCGAACCGAACTTGCGACAACACGTCCGAACGGATCACTCATTCGATTGCTTCTATCAGTACTGCAAGGATTCTCTCACGGAGAACGTGGAAGAAGACGAAACTGAAACGGCGAACGTCTATTTCAACTGCGAGTTTTGCCGCGTCGTCTTCGGTGAAATGTGCAATCTGCAAGAACACATGTACACGATACACGGAAAGGAATTAATCATTTGCAATTGTAACGTCTGCTACACTAAATTTTACTCAAACGAATCTCTCTCGGAGCACAAGAAGTTGTGTCTCGTCCCGAACGGAGCGCACTCCTGCAATCAGTGCGATAAACTATTCACAGAAAGATGCAGTCTCGATTTTCACGTACGCATATTCCACGTGGAAAACGAATCGTGCGATATAACTTCGACCAACTTACTAGACGACATGCTAGAATCATTTCCGGATGACCCCACATCCCCGATGTACAAGTGTCTGCAATGCGCGAGGCTGTACAACAGCGACCGTTCCTTGAAGCATCACATGAAGTTGAAGCATTCTTCGGATGAAGAAGTGGAATGCACGATATGCGGAAAAATCTGCAACAACAAATACTATCTGTCTAGTCACCTTAAAATAGTTCACACGACTGAAACGATCTCAAAATGCGACTACTGTGAGAAACAGTTCAAGTCTAAACGCAACATACGTCGTCACATCGAATATACGCATCTCGGAATGCAACGTTACAAGTGTCTGGAGTGCGAGACGCTCTTTAAAGAAAAACGCAGTCTCAGAAAGCACGTCCGGAGCAAGCATCCCGATTCCGTTTCGTTTCCCAAATGTCACATATGCCTAAAGCTGTTTGAGTCGGCGAAATCGTGCAAGATTCACCTGAAACTCGTGCACTCGTTCAATCTGAACACGCATCCGTGCGATCTGTGCAGCGTATCGTTCGGCAGCTTTCAAGCGCTCGATCGCCACTTGCGTACAAATCATTTGGCGGCCGATGAAATATACAAATGCGAGGATTGCAACGAAGTTTTCAAAGGGCAGGATAACTTTGAAATGCACAATGAGACGCAGCACATGACCTGCTCGCCGCGTCGCCAAAAAATTCTTCCCCGTTGCGTGATATGCATCAAAGACTTCAGCACGAGAAAGACGCTGAAACGACACTTGAAGAAGTTTCACTGCGAGCTGGACGTCGACGAAATGGTGGATTACGGAGTGAAGAACCGTAATTTCAGCGTCGAGTGCGAATACTGCTTGCGGAATTTTAACGACGATTTTTACTACGGAATCTATTTAAAACTGCAACACCTAAAGGAGTCGATAGTTTTCACCTGCGACGAGTGCTCCTATTCATACAACACGCTCGAATATTCAATACAGAGGTACAAGGTGAAACTGATGGACGAATGCCGAGTGAAGATGATTCTCAGCGAGTTGTGCACGGCGGAGATGAGCGATGACGACGACGACGATGAGATTATGTTCAACGACGATGCGATGGAGCCGGAGAGCACGACGGGCGACATCAAGATTGAGCACGATGATTGCGCGAGAGTGGAAAATACGTCACCTTGA
- Protein Sequence
- MSDQDRFECHDCGKVFHRKYNLRLHIDNCNRNFKSYCDVCARAFGSPSGLQKHMAKGHNTGDLCFPECDLCGRTFTRKQNLISHMITVHLRGSPCIRCELCAKNFSSERNLKRHNKLTHDPNTQFPTCNDCSKVFKAKHSLLAHIQNNHCNGSEDKVAKCEVCNKIYTNHRNLKRHLETLHGNKLSTFSCELCPKVYTSNQSLRRHTKSRHDPDNVLQCATCCQTFPNEIGLDYHEKMCHKAPEKFYKCDDCDKLFLFPHKLKEHSILCHTHMLHRCPFCEKQFIVEPNLRQHVRTDHSFDCFYQYCKDSLTENVEEDETETANVYFNCEFCRVVFGEMCNLQEHMYTIHGKELIICNCNVCYTKFYSNESLSEHKKLCLVPNGAHSCNQCDKLFTERCSLDFHVRIFHVENESCDITSTNLLDDMLESFPDDPTSPMYKCLQCARLYNSDRSLKHHMKLKHSSDEEVECTICGKICNNKYYLSSHLKIVHTTETISKCDYCEKQFKSKRNIRRHIEYTHLGMQRYKCLECETLFKEKRSLRKHVRSKHPDSVSFPKCHICLKLFESAKSCKIHLKLVHSFNLNTHPCDLCSVSFGSFQALDRHLRTNHLAADEIYKCEDCNEVFKGQDNFEMHNETQHMTCSPRRQKILPRCVICIKDFSTRKTLKRHLKKFHCELDVDEMVDYGVKNRNFSVECEYCLRNFNDDFYYGIYLKLQHLKESIVFTCDECSYSYNTLEYSIQRYKVKLMDECRVKMILSELCTAEMSDDDDDDEIMFNDDAMEPESTTGDIKIEHDDCARVENTSP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -