Nswa008747.1
Basic Information
- Insect
- Nematopogon swammerdamellus
- Gene Symbol
- -
- Assembly
- GCA_946902865.1
- Location
- CAMPPV010000264.1:331691-349682[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 3e-05 0.0022 19.2 1.3 1 23 21 43 21 43 0.98 2 13 9e-05 0.0069 17.7 1.7 1 23 72 94 72 94 0.98 3 13 9e-05 0.0069 17.7 1.7 1 23 123 145 123 145 0.98 4 13 4.6e-05 0.0035 18.6 1.6 1 23 174 196 174 196 0.98 5 13 9e-05 0.0069 17.7 1.7 1 23 225 247 225 247 0.98 6 13 4.6e-05 0.0035 18.6 1.6 1 23 276 298 276 298 0.98 7 13 9e-05 0.0069 17.7 1.7 1 23 327 349 327 349 0.98 8 13 4.6e-05 0.0035 18.6 1.6 1 23 378 400 378 400 0.98 9 13 3.3e-05 0.0025 19.1 2.0 1 23 429 451 429 451 0.99 10 13 3.3e-05 0.0025 19.1 2.0 1 23 480 502 480 502 0.99 11 13 0.00039 0.029 15.7 2.3 1 23 531 553 531 553 0.98 12 13 6.9e-05 0.0052 18.0 1.4 1 23 559 581 559 581 0.98 13 13 0.0029 0.22 13.0 0.1 1 23 587 611 587 611 0.92
Sequence Information
- Coding Sequence
- ATGCGTGCGCGCAGGTTGCTGGACTACCACGTGAAGGCGAGCCACACCGGCGAGCGGCCCTACAAGTGCGCCATGTGCGGAGCCACCTTCGTCTACCCGGAGCACTACAAGAAGCACACGCGCGCGCACAGCGGCGAGAAACCGTACGTCTGCGAGGTGAGCGCTAATCAACTGGACTACCACGTGAAGGCGAGCCACACGGGCGAGCGGCCCTACAAGTGCGCCAGGTGCGGCGCCACCTTCGTGTACCCGGAGCACTACAAGAAGCACACGCGCGCGCACAGCGGCGAGAAACCGTACGTCTGCGAGGTGAGCGCTAATCAACTGGACTACCACGTGAAGGCGAGCCACACGGGCGAGCGGCCCTACAAGTGCGCCAGGTGCGGCGCCACCTTCGTGTACCCGGAGCACTACAAGAAGCACACGCGCGCGCACAGCGGCGAGAAACCGTACGTCTGCGAGGTGAGCGCTAATCAACTGGACTACCACGTGAAGGCGAGCCACACCGGCGAGCGGCCCTACAAGTGCGCCACGTGCGGCGCCACCTTCGTCTACCCGGAGCACTACAAGAAGCACACGCGCGCGCACAGCGGCGAGAAACCGTACGTCTGCGAGGTGAGCGCTAATCAACTGGACTACCACGTGAAGGCGAGCCACACGGGCGAGCGGCCCTACAAGTGCGCCAGGTGCGGCGCCACCTTCGTGTACCCGGAGCACTACAAGAAGCACACGCGCGCGCACAGCGGCGAGAAACCGTACGTCTGCGAGGTGAGCGCTAATCAACTGGACTACCACGTGAAGGCGAGCCACACCGGCGAGCGGCCCTACAAGTGCGCCACGTGCGGCGCCACCTTCGTCTACCCGGAGCACTACAAGAAGCACACGCGCGCGCACAGCGGCGAGAAACCGTACGTCTGCGAGGTGAGCGCTAATCAACTGGACTACCACGTGAAGGCGAGCCACACGGGCGAGCGGCCCTACAAGTGCGCCAGGTGCGGCGCCACCTTCGTGTACCCGGAGCACTACAAGAAGCACACGCGCGCGCACAGCGGCGAGAAACCGTACGTCTGCGAGGTGAGCGCTAATCAACTGGACTACCACGTGAAGGCGAGCCACACCGGCGAGCGGCCCTACAAGTGCGCCACGTGCGGCGCCACCTTCGTCTACCCGGAGCACTACAAGAAGCACACGCGCGCGCACAGCGGCGAGAAACCGTACGTCTGCGAGGTGAGCGCTAATCAACTGGGCTACCACGTGAAGGCGAGCCACACCGGCGAGCGGCCCTACAAGTGCGCCACGTGCGGCGCCACCTTCGTCTACCCGGAGCACTACAAGAAGCACAAGCGCGTGCACAGCGGCGAGAAACCGTACGTCTGCGAGGTGAGCGCTAATCAACTGGGCTACCACGTGAAGGCGAGCCACACCGGCGAGCGGCCCTACAAGTGCGCCACGTGCGGCGCCACCTTCGTCTACCCGGAGCACTACAAGAAGCACAAGCGCGTGCACAGCGGCGAGAAACCGTACGTCTGCGAGGTGAGCGCTAATCAACTGGGCTACCACGTGAAGGCGAGCCACACCGGCGAGCGGCCCTACAAGTGCGCCAGGTGCGGCGCCACCTTCGTCTACCTGGAACACTACAAGAAGCACACGCGCGCGCACAGCGGCGAGAAACCGTACGTCTGCGAGGTGTGCAACCGAACGTTCAACTCGCGCGACAACCGCAACGCGCACCGCTTCACGCACAGCGACAAGAAGCCGTACGAGTGCGTGGTGTGCGGCGCCGGCTTCATGAGGAAACCTCTGCTCTATTCACACATGAACTCGCAGGGTCATTTATCGGACATAATCGTCGTGAACCAGGCTCGGCTGACAGACAAGGCCAAGACCATTGCAGAGACTCGGATGTTTGGTGACATGGAGCACTTAGCTGAAGCCCAGATGGAGACAGAGACCTCAGATAAATCAAATGAAGGTGCCGCGGCAGCGGATGGAGGTGGGACAGAGCAGGACTTGCTGTGCACTACCGACGTGGGGGAGCTGCTGGCTCAGGGCTCCGAGAAGCGGCGGCGGCCGGTCGTCCCGCGGCCGAGCTATGTACAGCGGCCGGCGCTCGGCCGCGACCGACAAACACAATGGAGCGGCGGCCGCGCGCTCACTCTACCGGTGATGCAGTTGAGTTACATCGCCGTACGTATGAGCGCCACGCCGGCGCGCCTCCGCCGCCGCGCTTTCCGCCAGGCCGCCGCCGCCGCCTAA
- Protein Sequence
- MRARRLLDYHVKASHTGERPYKCAMCGATFVYPEHYKKHTRAHSGEKPYVCEVSANQLDYHVKASHTGERPYKCARCGATFVYPEHYKKHTRAHSGEKPYVCEVSANQLDYHVKASHTGERPYKCARCGATFVYPEHYKKHTRAHSGEKPYVCEVSANQLDYHVKASHTGERPYKCATCGATFVYPEHYKKHTRAHSGEKPYVCEVSANQLDYHVKASHTGERPYKCARCGATFVYPEHYKKHTRAHSGEKPYVCEVSANQLDYHVKASHTGERPYKCATCGATFVYPEHYKKHTRAHSGEKPYVCEVSANQLDYHVKASHTGERPYKCARCGATFVYPEHYKKHTRAHSGEKPYVCEVSANQLDYHVKASHTGERPYKCATCGATFVYPEHYKKHTRAHSGEKPYVCEVSANQLGYHVKASHTGERPYKCATCGATFVYPEHYKKHKRVHSGEKPYVCEVSANQLGYHVKASHTGERPYKCATCGATFVYPEHYKKHKRVHSGEKPYVCEVSANQLGYHVKASHTGERPYKCARCGATFVYLEHYKKHTRAHSGEKPYVCEVCNRTFNSRDNRNAHRFTHSDKKPYECVVCGAGFMRKPLLYSHMNSQGHLSDIIVVNQARLTDKAKTIAETRMFGDMEHLAEAQMETETSDKSNEGAAAADGGGTEQDLLCTTDVGELLAQGSEKRRRPVVPRPSYVQRPALGRDRQTQWSGGRALTLPVMQLSYIAVRMSATPARLRRRAFRQAAAAA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -