Nswa026680.1
Basic Information
- Insect
- Nematopogon swammerdamellus
- Gene Symbol
- -
- Assembly
- GCA_946902865.1
- Location
- CAMPPV010001173.1:279515-307581[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.83 63 5.2 0.1 1 12 574 585 574 588 0.87 2 17 0.00023 0.018 16.4 1.8 1 23 599 621 599 621 0.98 3 17 0.00031 0.023 16.0 1.6 2 23 628 649 627 649 0.97 4 17 2.4e-06 0.00018 22.7 0.9 1 23 655 677 655 677 0.98 5 17 5.8e-05 0.0044 18.3 1.2 3 23 685 706 683 706 0.97 6 17 2.4e-06 0.00018 22.7 0.9 1 23 712 734 712 734 0.98 7 17 5.4e-05 0.0041 18.4 1.1 3 23 742 763 740 763 0.97 8 17 2.4e-06 0.00018 22.7 0.9 1 23 782 804 782 804 0.98 9 17 8.3 6.3e+02 2.1 0.0 7 21 816 830 816 831 0.93 10 17 2.4e-06 0.00018 22.7 0.9 1 23 847 869 847 869 0.98 11 17 0.00035 0.027 15.8 1.0 3 22 877 896 875 900 0.94 12 17 1.8e-05 0.0013 19.9 0.6 3 23 916 936 914 936 0.98 13 17 0.00011 0.008 17.5 0.3 3 22 944 963 942 967 0.94 14 17 1.8e-05 0.0013 19.9 0.6 3 23 983 1003 981 1003 0.98 15 17 0.00041 0.031 15.6 1.3 3 22 1011 1030 1009 1034 0.94 16 17 1.8e-05 0.0013 19.9 0.6 3 23 1050 1070 1048 1070 0.98 17 17 5e-05 0.0038 18.5 1.0 3 23 1078 1099 1076 1099 0.97
Sequence Information
- Coding Sequence
- ATGAGTGACGACGCTCTCGACACGAGTGGTGACCCTCCGGACGTGAGTGAAGGCACATTCGACACTGACTACGCTTTCCAATGGACTCCCGAGCTTTCCAAGAGTTTCTTCCACCTGCGCTTGCAACACGAGTGGCTCTTCAAAAAGAAGAAACAAGCTTGGAAGGAGTTTTACAAACTCATGTTGGATAAAGGCTTTCCAAAATCACTCACTTTAAGCCAAGTGAGGAAGAAATGGGGCTATACCTTCGATGTATACAAGGAAGCTAAATTAAAAAATAATTCATCCTGGATTTACTATGACATTTTCGATCAATACTTGAGCGAAGTCGTCACACTCGACAAGTATGAATCTTGGAGTGAAGAGTGGAGGTTGAAGCTGATTCAAGCCTACCAGGCTTCCCACACTCATTGTCAAACCTCTCGGGACCAAACATTTTGGAGAGAAGTGGAGAGAGATCTCCGCGCGAGCGGCTTACCGATGGAATGCTGCATACAGGACTTGAGGGGACTCATTCATCATTTGAAAATGACATTCGAGCGCAAGTGGTGCGTGGTGGCGCGGAAGGGCGCGGTGTCGTGGCCGCTGTACGCGAGCATGCTGCAGCTGTACGAGCGGTGCGAGCCGGAGAGCCTCCGCAGGCTGCGCGGCGAGCGCAGTGTCGCACCCAAGAAGCAACCCACCAGCAGCGGTCAGCGCTGCATGTACTCGAGCAACGATGAACAGTTCGCTTGGGAGGAACAGTGGGTGCACCGGCTTATAGAGTCGAGGAACCTGCATCATCACTTATTCAAGCTATGCAAAACATCTACAGAAGCTTGGAGAGAGGTTGAGAAAGATTTAAGAAAATCAGATATACCGTTGGACCATAGCTTAATGGACCTTGAAGATATATGGAAAAACCTTACGAAAATGTTTAAGTGGAAGAGCAAATTCGCCGCGGAGGGTTGCCTGCGTGACGAGTGGCCGTTCTACAGCGGCATGGAGAAACACTTTGAGATGGACAAACCCAACACAGCGACCATTCCAGTCAAACACAAATATAAAACACAAAACATAAAAATTCCCATCCAGCGTAAGGAGCCGGGCACCGCTGAGATCGCGGCGGTGTTTGTCAAGGCCGACGATTCAGATCTGGATGACAATCTCAATGATGACTTCAGCGATGAAGACATCAAACCGCTGTGTTCTGTTAGCAAGGTAGAGGTGGCGGTGGAGACGGCCTCGGTGGGTGTGGAGGTGGCGGTGGAGCCGTCAGCGACGGATCTCGCGGTGTGCCGGGGGTGCGGCGCGCGGGAAGCGGGGGGCGCTCCGCTCTGGGGCGAGGAGGGGCTCGCCGACATATTTGGTACCATCGCTGGAGTCGAGGTGGAAGAATCAGACGGTCTGCCCGATCGTCTCTGCGACCAGTGCGTGACGCGACTAAAGGACGCGTACAACTTCCGATCGAAATGTCAAGCGACCGACCGGCAGCACCGACTGGCGTCCGTCAAGATCGAGAGCGTCCCGCTCGACGACGGCGACGACTTCCACCGCGACTACGACCGCCCCAAGCTGGAGGCGAGCGACGCCGACTCACCCCAGCTCAGCATAGTAAAAACCGAAAAAGTACAACCGAAGAGTAATGCAAAAAAAAATTTTAAAAGAGCATCCAAAAGAAAGCCAAAGACGGAAGGAGCCAAACGGATCAGAGACAGGAAGCGGAGATACGAATACCGGCATGTTTGCGAGGTTTGCGGTAAGAGCGTCACGAATATCAAAGAGCACGTCACTGCGCACGCGGGAGGCGTCGCGTACTCTTGCGGCATTTGCAGCCGAAGCTTTAAGACGAGCGGCGGCCTCCACATACACAAGACGACGCACAGCGACGCGATAGTCAAGACATGCGAGATCTGCGGCAAGTCCTTCAAGGTGATGCTCAACTACAAGAAGCACTACAAGCTGCATCTGAACGAGCGCAAGTTCAGCTGCGAGACATGCGGCAAGAAGTTCAACCAGCGGGACGGGCTGGTGGTGCACCGGCGGACTCACTCGGACGAGCGGCCGTTCGGCTGCCCGGACTGCGGCAAGCGCTTCCGCACGGCCGCCTGCGTCTCGCGACACCGGCGCATCCTGCACCTGAACGAGCGCAAGTTCAGCTGCGAGACTTGCGGCAAGAAGTTCAACCAGCGGGACGGGCTGGTGGTGCACCGGCGGACTCACTCGGACGAGCGGCCGTTCGGCTGCCCGGACTGCGGCAAGCGCTTCCGCACGGCCGCCTGCGTCTCGCGACACCGGCGCATCGAGCATAAGATACAGAACCCCGGCGGCAAGCACTACAAGCTGCATCTGAACGAGCGCAAGTTCAGCTGCGAGACATGCGGCAAGAAGTTCAACCAGAGGGACGGGCTGGTGGTGCACCGGCGGACTCACTCGGACGAGCGGCCGTTCGGCAGCCCGGGCTACGGCAAGCGCTTCCGCACGGCCGCCTGCGTCTCGCGACACCGGCGCATCGTGCTCAAGATACAGAACCCAGGCGGCGTCAACTATCGTCGCAAGTTCAGCTGCGAGACTTGCGGCAAGAAGTTCAACCAGCGGGACGGGCTGGTGGTGCACCGGCGGACTCACTCGGACGAGCGGCCGTTCGGCTGCCCGGACTGCGGCAAGCGCTTCCGCACGGCCGCCTGCGTCTCGCGACACCGGCGCATCTCGAGCGTTCATTCCAAGAAGCACTACAAGCTGCATCTGAACGAGCGCAAGTTCGGCTGCGAGACATGCGGCAAGAAGTTCAACCAGAGGGACGGGCTGGTGGTGCACCGGCGGACTCACTCGGACGAGCGGCCGTTCGGCTGCCCGGACTGCGGCAAGCGCTTCCGCACGGCCGCCTACGTCTCGCGACACCGGCGCAGCTCGAGCGTTCATTCCAAGAAGCACTACAAGCTGCATCTGAACGAGCGCAAGTTCGGCTGCGAGACATGCGGCAAGAAGTTCAACCAGAGGGACGGGCTGGTGGTGCACCGGCGGACTCACTCGGACGAGCGGCCGTTCGGCTGCCCGGACTGCGGCAAGCGCTTCCGCACGGCCGCCTGCGTCTCGCGACACCGGCGCAGCTCGAGCGTTCATTCCAAGAAGCACTACAAGCTGCATCTGAACGAGCGCAAGTTCGGCTGCGAGACATGCGGCAAGAAGTTCAACCAGAGGGACGGGCTGGTGGTGCACCGGCGGACTCACTCGGACGAGCGGCCGTTCGGCTGCCCGGACTGCGGCAAGCGCTTCCGCACGGCCGCCTGCGTCTCGCGACACCGGCGCATCGTGCACAAGATACAGAACCCCGGCGGCGTCAACTATCGTGTGCGGCCTTAG
- Protein Sequence
- MSDDALDTSGDPPDVSEGTFDTDYAFQWTPELSKSFFHLRLQHEWLFKKKKQAWKEFYKLMLDKGFPKSLTLSQVRKKWGYTFDVYKEAKLKNNSSWIYYDIFDQYLSEVVTLDKYESWSEEWRLKLIQAYQASHTHCQTSRDQTFWREVERDLRASGLPMECCIQDLRGLIHHLKMTFERKWCVVARKGAVSWPLYASMLQLYERCEPESLRRLRGERSVAPKKQPTSSGQRCMYSSNDEQFAWEEQWVHRLIESRNLHHHLFKLCKTSTEAWREVEKDLRKSDIPLDHSLMDLEDIWKNLTKMFKWKSKFAAEGCLRDEWPFYSGMEKHFEMDKPNTATIPVKHKYKTQNIKIPIQRKEPGTAEIAAVFVKADDSDLDDNLNDDFSDEDIKPLCSVSKVEVAVETASVGVEVAVEPSATDLAVCRGCGAREAGGAPLWGEEGLADIFGTIAGVEVEESDGLPDRLCDQCVTRLKDAYNFRSKCQATDRQHRLASVKIESVPLDDGDDFHRDYDRPKLEASDADSPQLSIVKTEKVQPKSNAKKNFKRASKRKPKTEGAKRIRDRKRRYEYRHVCEVCGKSVTNIKEHVTAHAGGVAYSCGICSRSFKTSGGLHIHKTTHSDAIVKTCEICGKSFKVMLNYKKHYKLHLNERKFSCETCGKKFNQRDGLVVHRRTHSDERPFGCPDCGKRFRTAACVSRHRRILHLNERKFSCETCGKKFNQRDGLVVHRRTHSDERPFGCPDCGKRFRTAACVSRHRRIEHKIQNPGGKHYKLHLNERKFSCETCGKKFNQRDGLVVHRRTHSDERPFGSPGYGKRFRTAACVSRHRRIVLKIQNPGGVNYRRKFSCETCGKKFNQRDGLVVHRRTHSDERPFGCPDCGKRFRTAACVSRHRRISSVHSKKHYKLHLNERKFGCETCGKKFNQRDGLVVHRRTHSDERPFGCPDCGKRFRTAAYVSRHRRSSSVHSKKHYKLHLNERKFGCETCGKKFNQRDGLVVHRRTHSDERPFGCPDCGKRFRTAACVSRHRRSSSVHSKKHYKLHLNERKFGCETCGKKFNQRDGLVVHRRTHSDERPFGCPDCGKRFRTAACVSRHRRIVHKIQNPGGVNYRVRP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -