Nswa027879.1
Basic Information
- Insect
- Nematopogon swammerdamellus
- Gene Symbol
- -
- Assembly
- GCA_946902865.1
- Location
- CAMPPV010001255.1:19667-39279[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 26 5 3.8e+02 2.8 0.3 1 23 131 154 131 154 0.90 2 26 0.0038 0.29 12.6 0.7 2 19 189 206 188 208 0.94 3 26 0.0002 0.015 16.6 0.4 3 23 220 241 219 241 0.96 4 26 0.00016 0.012 16.9 1.1 3 23 249 270 248 270 0.91 5 26 0.04 3 9.4 0.1 1 23 277 300 277 300 0.96 6 26 0.007 0.53 11.7 4.0 2 23 308 332 307 332 0.92 7 26 0.0095 0.72 11.3 0.0 2 23 377 399 376 399 0.92 8 26 0.0002 0.015 16.6 0.1 3 23 408 429 407 429 0.98 9 26 0.00014 0.011 17.0 1.2 3 23 443 464 442 464 0.96 10 26 0.021 1.6 10.2 2.1 2 23 472 494 472 494 0.95 11 26 3.4e-05 0.0026 19.0 1.9 1 23 500 522 500 522 0.96 12 26 0.0069 0.53 11.7 0.6 1 23 527 552 527 552 0.96 13 26 0.0061 0.46 11.9 0.1 1 23 563 586 563 586 0.95 14 26 0.0061 0.46 11.9 0.1 1 23 613 636 613 636 0.95 15 26 0.0061 0.46 11.9 0.1 1 23 663 686 663 686 0.95 16 26 0.0061 0.46 11.9 0.1 1 23 713 736 713 736 0.95 17 26 0.0061 0.46 11.9 0.1 1 23 763 786 763 786 0.95 18 26 0.0061 0.46 11.9 0.1 1 23 813 836 813 836 0.95 19 26 0.0061 0.46 11.9 0.1 1 23 863 886 863 886 0.95 20 26 0.0061 0.46 11.9 0.1 1 23 913 936 913 936 0.95 21 26 0.0061 0.46 11.9 0.1 1 23 963 986 963 986 0.95 22 26 0.0061 0.46 11.9 0.1 1 23 1013 1036 1013 1036 0.95 23 26 0.0061 0.46 11.9 0.1 1 23 1063 1086 1063 1086 0.95 24 26 0.0061 0.46 11.9 0.1 1 23 1113 1136 1113 1136 0.95 25 26 0.0061 0.46 11.9 0.1 1 23 1163 1186 1163 1186 0.95 26 26 2.4 1.8e+02 3.7 0.0 3 23 1193 1215 1191 1215 0.89
Sequence Information
- Coding Sequence
- ATGGATGCTGCGGGCTCGGCGCACTGCGGCTCCGGCGTGGAGGCGGAGCTGCCGCCGGGCGCGGCGCGCGTGAAGACGGAGCCCGGGCTGGAGGCACCCGGCGCGGAGCAGCTCTACAGCGGAGGCGGAGGCGAGGACGTGAAGCCGCCGCTGGCTCTGGCTGAGGTGTATGTGAAGAGTGAGGCGGCGACGTGTGTGAAGCTGGAGAGCGGTGCGAATGTGACGGTGAAGGTGGAGAGGTTGTCGCCGCGCGGGGAGGAGGCGCAGGAGTGGGAGTGCAGCACCGCCGCGCAGCTGGTGAGCTACGAGGGCGGGCGGAGGCGGGAGCCGGCGCGGCCCGGCGGCGCAGCCTCCTCGCTCAACTGCGACCAGGCCAAGCGGACGCACCGGCACGAGTGCGCGCTGTGCGGGGACGAGTTCAAGTCTGGCATGGGACTCAAAATACACAACACCAAGGTGCACCCGGCCGGCGACGCGCGCACCGGCCCGCCCGGAGACAACGTCCTCGAGGTGCGGGAGAGCGCGCGCGGGCGGGCGGTGCTGGTGGACGGCGTGAAGCGGCTGCAGTGCGCGCACTGCGACAAGAGCTTCCCGTCGCGCAAGCGTCTGCGCGACCACGCGACCTGCGCGCACCCCGCGCCGCACCGCGCCGCCGCCTGCTCCCTCTGCGCCAAGACCTTCAAGACCAAGATCAACCTCAAGATACACGTGCGCCTCGTGCACGCGCCGCCCCAGCCCGCGCCCTGCCCGCAGTGCCACAAGACATTCAAGAGCTGGCTGCTGCTGCAGAAGCACACGGCGTGGAGCCACCCGACCGACGGCCGCCTCTACCCGTGCCCGCTGTGTCCGCGCACCCTGCGCTCCCTCCTCGGCTACGCCAAGCACGTGCAGCGGGTGCACCCGCCGGCGGGCGCGGTCACGCGCTGCCCGGAGCCCGCCTGCCGCAAGGTCTTCAAGTCTGCCTTCCACCTGCGCCAGCACCACCGCCGCTTCCACCTCAAGTCGGCTCGCTCCACTCCGCCCGCGCCACCCGCGCCGCCGCCACCCTCCGCCGAGCCGGGCGCCGCCGCGGCCGCCCCCGCGCCGCCGCTCGACGCGCGTCGCCAGTGGGCGGCGGCCGAGCGGCAGCCGTGCGCGCTGTGCTGGCGCACCTTCGCGTCGCCGGGCGCGCTCGAGTGGCACCGCTCCCTCGAGCACCCCGACGGCGCCGCCAGCAACCTCTGCTCGCTCTGCGGCAAGGCGCTGCCGGACAAGGCGTCGCTGCAGCGGCACGTGCGCATGGTGCACGCGCCCACGCCCGAGCCGGACTCGCCGGACGCGCCCGCCTGCGCCGAGTGCCACAAGCGCTTCAAGTCTGCCGCGAGCCTGCGCCAGCACGAGCGCGTCACGCACGCGCCGCCCGAGGCCGCCGCCACCTGCCCGCAGTGCGGCAAGGTGCTCAAGTGTCGCGCGCATCTACAGGTGCACACGCGCGCGGTGCACGGCGAGACGGGCTCGCACGCGTGCCGCGAGTGCGGCAAGCTCTTCACGCGCCCCAAGTACCTCGAGCGGCACGAGCGCTCGCACGCCGCCAAGACTCACTCCTGCCCCGCGCCCGACTGCCGCAAGCTCTTCAAGAGCGAGGAGGACGTGCGCCGGCACGAGCGCCGCGTGCACGCCGCCAGGCCGTCCACACCGCCCGCCAGGTACCGGTGCGGCGCGTGCGACAAGGAGCTGAGCACGGTGTACACTCTGCGCGCGCACATGAGCGGCGTGCACGCGGCGCCCTGCCTGCCCTGCCCGCAGCCCGCCTGCCGCGTCGGCTTCCCCTCGCCGCGAGCAGAGTGTTGTGATGTGTACCGGTGCGGCGCGTGCGACAAGGAGCTGAGCACGGTGTACACTCTGCGCGCGCACATGAGCGGCGTGCACGCGGCGCCCTGCCTGCCCTGCCCGCAGCCCGCCTGCCGCGTCGGCTTCCCCTCGCCGCGAGCAGAGTGTTGTGATGTGTACCGGTGCGGCGCGTGCGACAAGGAGCTGAGCACGGTGTACACTCTGCGCGCGCACATGAGCGGCGTGCACGCGGCGCCCTGCCTGCCCTGCCCGCAGCCCGCCTGCCGCGTCGGCTTCCCCTCGCCGCGAGCAGAGTGTTGTGATGTGTACCGGTGCGGCGCGTGCGACAAGGAGCTGAGCACGGTGTACACTCTGCGCGCGCACATGAGCGGCGTGCACGCGGCGCCCTGCCTGCCCTGCCCGCAGCCCGCCTGCCGCGTCGGCTTCCCCTCGCCGCGAGCAGAGTGTTGTGATGTGTACCGGTGCGGCGCGTGCGACAAGGAGCTGAGCACGGTGTACACTCTGCGCGCGCACATGAGCGGCGTGCACGCGGCGCCCTGCCTGCCCTGCCCGCAGCCCGCCTGCCGCGTCGGCTTCCCCTCGCCGCGAGCAGAGTGTTGTGATGTGTACCGGTGCGGCGCGTGCGACAAGGAGCTGAGCACGGTGTACACTCTGCGCGCGCACATGAGCGGCGTGCACGCGGCGCCCTGCCTGCCCTGCCCGCAGCCCGCCTGCCGCGTCGGCTTCCCCTCGCCGCGAGCAGAGTGTTGTGATGTGTACCGGTGCGGCGCGTGCGACAAGGAGCTGAGCACGGTGTACACTCTGCGCGCGCACATGAGCGGCGTGCACGCGGCGCCCTGCCTGCCCTGCCCGCAGCCCGCCTGCCGCGTCGGCTTCCCCTCGCCGCGAGCAGAGTGTTGTGATGTGTACCGGTGCGGCGCGTGCGACAAGGAGCTGAGCACGGTGTACACTCTGCGCGCGCACATGAGCGGCGTGCACGCGGCGCCCTGCCTGCCCTGCCCGCAGCCCGCCTGCCGCGTCGGCTTCCCCTCGCCGCGAGCAGAGTGTTGTGATGTGTACCGGTGCGGCGCGTGCGACAAGGAGCTGAGCACGGTGTACACTCTGCGCGCGCACATGAGCGGCGTGCACGCGGCGCCCTGCCTGCCCTGCCCGCAGCCCGCCTGCCGCGTCGGCTTCCCCTCGCCGCGAGCAGAGTGTTGTGATGTGTACCGGTGCGGCGCGTGCGACAAGGAGCTGAGCACGGTGTACACTCTGCGCGCGCACATGAGCGGCGTGCACGCGGCGCCCTGCCTGCCCTGCCCGCAGCCCGCCTGCCGCGTCGGCTTCCCCTCGCCGCGAGCAGAGTGTTGTGATGTGTACCGGTGCGGCGCGTGCGACAAGGAGCTGAGCACGGTGTACACTCTGCGCGCGCACATGAGCGGCGTGCACGCGGCGCCCTGCCTGCCCTGCCCGCAGCCCGCCTGCCGCGTCGGCTTCCCCTCGCCGCGAGCAGAGTGTTGTGATGTGTACCGGTGCGGCGCGTGCGACAAGGAGCTGAGCACGGTGTACACTCTGCGCGCGCACATGAGCGGCGTGCACGCGGCGCCCTGCCTGCCCTGCCCGCAGCCCGCCTGCCGCGTCGGCTTCCCCTCGCCGCGAGCAGAGTGTTGTGATGTGTACCGGTGCGGCGCGTGCGACAAGGAGCTGAGCACGGTGTACACTCTGCGCGCGCACATGAGCGGCGTGCACGCGGCGCCCTGCCTGCCCTGCCCGCAGCCCGCCTGCCGCGTCGGCTTCCCCTCGCCGCAAGCGCTGGCGGAGCACGCGCAGACACACCTCGAGCGCGTGAAGCTGGAGCCGCCGGAGCCGGAGCCGGCGCGCCGACACAACGGCCGCGCGCCCGCCTCGCCGCCTCCGCGCGTTAAGCTGGAGCCGCACGAGCCGGAGCCGCCCGCGTGGGCCGCCGCCGCCGAGGGCTAG
- Protein Sequence
- MDAAGSAHCGSGVEAELPPGAARVKTEPGLEAPGAEQLYSGGGGEDVKPPLALAEVYVKSEAATCVKLESGANVTVKVERLSPRGEEAQEWECSTAAQLVSYEGGRRREPARPGGAASSLNCDQAKRTHRHECALCGDEFKSGMGLKIHNTKVHPAGDARTGPPGDNVLEVRESARGRAVLVDGVKRLQCAHCDKSFPSRKRLRDHATCAHPAPHRAAACSLCAKTFKTKINLKIHVRLVHAPPQPAPCPQCHKTFKSWLLLQKHTAWSHPTDGRLYPCPLCPRTLRSLLGYAKHVQRVHPPAGAVTRCPEPACRKVFKSAFHLRQHHRRFHLKSARSTPPAPPAPPPPSAEPGAAAAAPAPPLDARRQWAAAERQPCALCWRTFASPGALEWHRSLEHPDGAASNLCSLCGKALPDKASLQRHVRMVHAPTPEPDSPDAPACAECHKRFKSAASLRQHERVTHAPPEAAATCPQCGKVLKCRAHLQVHTRAVHGETGSHACRECGKLFTRPKYLERHERSHAAKTHSCPAPDCRKLFKSEEDVRRHERRVHAARPSTPPARYRCGACDKELSTVYTLRAHMSGVHAAPCLPCPQPACRVGFPSPRAECCDVYRCGACDKELSTVYTLRAHMSGVHAAPCLPCPQPACRVGFPSPRAECCDVYRCGACDKELSTVYTLRAHMSGVHAAPCLPCPQPACRVGFPSPRAECCDVYRCGACDKELSTVYTLRAHMSGVHAAPCLPCPQPACRVGFPSPRAECCDVYRCGACDKELSTVYTLRAHMSGVHAAPCLPCPQPACRVGFPSPRAECCDVYRCGACDKELSTVYTLRAHMSGVHAAPCLPCPQPACRVGFPSPRAECCDVYRCGACDKELSTVYTLRAHMSGVHAAPCLPCPQPACRVGFPSPRAECCDVYRCGACDKELSTVYTLRAHMSGVHAAPCLPCPQPACRVGFPSPRAECCDVYRCGACDKELSTVYTLRAHMSGVHAAPCLPCPQPACRVGFPSPRAECCDVYRCGACDKELSTVYTLRAHMSGVHAAPCLPCPQPACRVGFPSPRAECCDVYRCGACDKELSTVYTLRAHMSGVHAAPCLPCPQPACRVGFPSPRAECCDVYRCGACDKELSTVYTLRAHMSGVHAAPCLPCPQPACRVGFPSPRAECCDVYRCGACDKELSTVYTLRAHMSGVHAAPCLPCPQPACRVGFPSPQALAEHAQTHLERVKLEPPEPEPARRHNGRAPASPPPRVKLEPHEPEPPAWAAAAEG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -