Nswa034220.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Nematopogon swammerdamellus
Gene Symbol
su(Hw)
Assembly
GCA_946902865.1
Location
CAMPPV010002378.1:162415-181250[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 17 0.0059 0.44 12.0 5.2 1 23 181 203 181 203 0.96
2 17 0.0044 0.33 12.4 2.3 2 23 214 235 213 235 0.95
3 17 0.00023 0.018 16.4 0.2 1 23 242 264 242 264 0.97
4 17 0.00021 0.016 16.5 5.1 1 23 291 313 291 313 0.97
5 17 3.1e-06 0.00023 22.3 2.8 3 23 322 342 320 342 0.96
6 17 0.00021 0.016 16.5 0.1 1 23 348 370 348 370 0.99
7 17 1.3e-06 0.0001 23.5 0.2 1 23 370 392 370 392 0.98
8 17 3.5e-06 0.00027 22.1 0.3 1 21 398 418 398 419 0.93
9 17 2.9e-06 0.00022 22.4 0.2 1 23 426 448 426 448 0.98
10 17 3.5e-06 0.00027 22.1 0.3 1 21 454 474 454 475 0.93
11 17 2.9e-06 0.00022 22.4 0.2 1 23 482 504 482 504 0.98
12 17 1.1e-07 8.4e-06 26.8 1.6 1 23 510 532 510 532 0.96
13 17 0.00038 0.029 15.7 0.1 1 23 538 560 538 560 0.97
14 17 0.00049 0.037 15.4 0.4 1 23 566 588 566 588 0.98
15 17 5.2e-05 0.004 18.4 4.9 1 23 594 616 594 616 0.98
16 17 1.2e-05 0.00091 20.4 0.7 1 23 622 644 622 644 0.98
17 17 4.1e-05 0.0031 18.8 1.5 1 23 650 672 650 672 0.97

Sequence Information

Coding Sequence
ATGATTACAATCTCACTAGCGCAGCGCGAGCCCGCTGACGGCCCGCTGGTGATTTGTGAGCTGGTGAGCTGCCCTGACGGCGCACCGCAGGCGGGAGGCATGGAGGAGGCGGAGACGTGGCGAGCGTGTCGCACGTGTATGCGCGAGAACCACGAGATGTGTGCGCTGTTTGAGGAAGGCGCGGGCGCGCCGCCCTTTGCCGACATGCTCGCTGCATGCACGGGCCTTCGGGTGGAAAAATCCGACGGTCTACCGGAGCAGGTGTGCGCACCGTGCTTCCAGGCCGTAAGCGATTTCTACCAGTTTCGCTGCGAAGCGGAGCGCGCGGACCGCGAACTTCGCGACGTCCTTGCACTTCGCAGCTCCTTAGACATCAAGATCGAGCGGCCGCACACGGTGAAGCTTGAGCCTAACGACTCGGAGCACGCGCTGGACTTTATCAGCGACCGCGCGGACGATCGGTTGGATAACAAGAGCGATTCCGAGTCGGACGAGCCACTTATAAAATTAGAGGGAGTCAAATCTAAGATAAAGAAGGAGCACTGCTGCACTGTATGTGGAAAGCTGTTTCAAAAACTCTCCAAGCTTCAGCGGCACGAAAAGATTCACACGAAAGTGCGGCCCGAGCGAGCGTCCAAAGAATGTGCGATATGTTTCAAGAAGTTTAAGAAGGCGTTTCATTTGTTACGGCACAGCATCGTCCACGACCCGAAGCGCAGGCCGTTTGAGTGCGCGGTTTGCTTACGACGCTTCAGCAACAATGGAACTCTGCTCAACCACATGGTATCGCATCAACGCCCCAGCGGCGATTGTAATGTCAAGATGGAGATTGAGATATCTGGGATCGAGAACCGAGACGGGCCGGAAGCGCATCCGTGCGCTCACTGCAAGCAAGTGTTCCAGTCGCAGGCGTCGCTGTGCGCGCACATGCGCAAGCACCGCGCGGCCGGCCGCGTGCTCGCCTGCTCCATCTGCGGCAAGCAGTTCAAGAAGCTGAGCCACCTCAAGCGGCACGAGCGCTCGCACGAGGACAACCGACCGTTCAAGTGCAACCTCTGCCCCAAGTCATATCCCACCGACGTTCAGCTCGACGAGCATATTAATAAACATAAGTGCCCGGTGTGCGAGAAGGGGTTCGCGCAGCGCGGCACGCTCACGGCGCACCTGCGCGTGCACACGCGCGAGAAGCCCTACCTGTGCCCCACCTGCGGCAAGCGCTTCGACTCCAGCACCAACCTCAAGCAGCACATGCTCATGTTGCAGGGAGTGAAGCCGCACGTGTGCCCGGTGTGCGAGAAGGGGTTCGCGCAGCGCGGCACGCTCACGGCGCACCTGCGCGTGCACACGCGCGAGAAGCCCTACCTGTGCCCCACCTGCGGCAAGCGCTTCGACTCCAGCACCAACCTCAAGCAGCACATGCTCATGTTGCAGGGAGTGAAGCCGCACGTGTGCCCGGTGTGCGAGAAGGGGTTCGCGCAGCGCGGCACGCTCACGGCGCACCTGCGCGTGCACACGCGCGAGAAGCCCTACCTGTGCCCCACCTGCGGCAAGCGCTTCGACTCCAGCACCAACCTCAAGCAGCACATGCGGCGGCACGCCGGCGACAAGGCCTTCGCTTGCACCTACTGCCCGGGACGATACGTCAGCAAGGGCGAGCTGAACTCCCACATGAGCATCCACACGGGGGCGCGGCCGTTCGTCTGCGACGCTTGCGGCTCCTCCTTCACCAAGCCCAACTCCCTCGCCAAGCACAAGATGCGCCACCTGGGCATCAAGCCACACGAGTGCGATGTCTGCTACATCAGGTTCACGAGCAAGGAGCACCTGAAGCGTCACTACCGCATCCACACGGGCGAGAAGCCGTACAAGTGCGAGCTGTGCGAGCGCGCCTTCACGCAGAGCAACGACCTCGTCAAGCACAAGCGCGCGCATCTCGGCGAAAACCTATACAAATGCAAGGAGTGCTCGCAGAGCTTCCGGCTGAAGACCGAGCTCCGGAACCACATATCCGGCCACTTCATATCCTCGCAGGTCGCCGCCGGAGTTCCCATCTCCCTCCCGCCGGAGGTCATCATTAAACCGCTGCGCGACAAACCCGAACTCGTGTCCGACGACGCCGCGGAGACTCCAATCGTCGTCACGAGGGCCTCGGAGGATACCGTGCTCGCCGTGGACAAGGCGTCGCAGGCCTTGGCGCACACTCTGCTCGGCTCGAACTTGACGGGTGTCCTCATAGCGGAGCACGTGAGGAATATTCCGACCGCTATCACGGTGAAAAGAATTAGCTCACTGACGTAG
Protein Sequence
MITISLAQREPADGPLVICELVSCPDGAPQAGGMEEAETWRACRTCMRENHEMCALFEEGAGAPPFADMLAACTGLRVEKSDGLPEQVCAPCFQAVSDFYQFRCEAERADRELRDVLALRSSLDIKIERPHTVKLEPNDSEHALDFISDRADDRLDNKSDSESDEPLIKLEGVKSKIKKEHCCTVCGKLFQKLSKLQRHEKIHTKVRPERASKECAICFKKFKKAFHLLRHSIVHDPKRRPFECAVCLRRFSNNGTLLNHMVSHQRPSGDCNVKMEIEISGIENRDGPEAHPCAHCKQVFQSQASLCAHMRKHRAAGRVLACSICGKQFKKLSHLKRHERSHEDNRPFKCNLCPKSYPTDVQLDEHINKHKCPVCEKGFAQRGTLTAHLRVHTREKPYLCPTCGKRFDSSTNLKQHMLMLQGVKPHVCPVCEKGFAQRGTLTAHLRVHTREKPYLCPTCGKRFDSSTNLKQHMLMLQGVKPHVCPVCEKGFAQRGTLTAHLRVHTREKPYLCPTCGKRFDSSTNLKQHMRRHAGDKAFACTYCPGRYVSKGELNSHMSIHTGARPFVCDACGSSFTKPNSLAKHKMRHLGIKPHECDVCYIRFTSKEHLKRHYRIHTGEKPYKCELCERAFTQSNDLVKHKRAHLGENLYKCKECSQSFRLKTELRNHISGHFISSQVAAGVPISLPPEVIIKPLRDKPELVSDDAAETPIVVTRASEDTVLAVDKASQALAHTLLGSNLTGVLIAEHVRNIPTAITVKRISSLT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
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90% Identity
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80% Identity
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