Nswa027769.1
Basic Information
- Insect
- Nematopogon swammerdamellus
- Gene Symbol
- -
- Assembly
- GCA_946902865.1
- Location
- CAMPPV010001244.1:120250-122220[+]
Transcription Factor Domain
- TF Family
- zf-BED
- Domain
- zf-BED domain
- PFAM
- PF02892
- TF Group
- Zinc-Coordinating Group
- Description
- The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.099 2.6e+02 2.6 0.7 35 44 1 10 1 10 0.94 2 13 8.2e-08 0.00021 22.1 0.4 17 44 23 48 17 48 0.94 3 13 8.2e-08 0.00021 22.1 0.4 17 44 61 86 55 86 0.94 4 13 8.2e-08 0.00021 22.1 0.4 17 44 99 124 93 124 0.94 5 13 5.8e-08 0.00015 22.6 0.8 14 44 134 162 128 162 0.90 6 13 8.2e-08 0.00021 22.1 0.4 17 44 175 200 169 200 0.94 7 13 3.5e-05 0.091 13.7 0.1 21 44 217 238 213 238 0.89 8 13 7e-07 0.0018 19.1 0.4 17 44 251 276 245 276 0.94 9 13 8.2e-08 0.00021 22.1 0.4 17 44 289 314 283 314 0.94 10 13 1.5e-06 0.0039 18.1 0.3 17 44 327 352 321 352 0.94 11 13 8.2e-08 0.00021 22.1 0.4 17 44 365 390 359 390 0.94 12 13 8.2e-08 0.00021 22.1 0.4 17 44 403 428 397 428 0.94 13 13 7.4e-08 0.00019 22.2 0.3 17 44 441 466 434 466 0.94
Sequence Information
- Coding Sequence
- ATGCGTAAGCACCTCACCTCCAAGCACCCGCTCGTGTCCGACCAAGCTGCCGCCGGCAACATGACGGTGCGCTGCAAGCTGTGCAGCGGTACGTACAGCTCTGCCGTCAGCAACATGCGTAAGCACCTCGCCTCCAAGCACCCGCTCGTGTCCGACCAAGCTGCAGCCGGCAACATGACGGTGCGCTGCAAGCTGTGCAGCGGTACGTACAGCTCTGCCGTCAGCAACATGCGTAAGCACCTCGCCTCCAAGCACCCGCTCGTGTCCGACCAAGCTGCAGCCGGCAACATGACGGTGCGCTGCAAGCTGTGCAGCGGCACGTACAGCTCTGCCGTCAGCAACATGCGCAAGCACCTCGCCTCCAAGCACCCGCTCGTGTCCGACCAAGCTGCAGCCTGCAACATGACGGTGCGCTGCAAGCTGTGCAGCGGCACGTACAGCTCTGCCGTCAGCAACATGCGTAAGCACCTCGCCTCCAAGCACCCGCTCGTGTCCGACCAAGCTGCAGCCGGCAACATGACGGTGCGCTGCAAGCTGTGCAGCGGCACGTACAGCTCTGCCGTCAGCAACATGCGCAAGCACCTCGCCTCCAAGCACCCGCTCGTGTCCGACCAAGCTGCAGCCGGCAACATGACGGTGCGCTACAAGCTGTGCAGCGGCACGTACAGCTCTGCCGTCAGCAACATGCGCAAGCACCTCGACTCCAAGCACCCGCTCGTGTCCGACCAAGCTGCCGCCGGCAACATGACGGTGCGCTGCAAGCTGTGCAGCAGTACGTACAGCTCTGCCGTCAGCAACATGCGTAAGCACTTCGCCTCCAAGCACCCGCTCGTGTCCGACCAAGCTGCAGCCGGCAACATGACGGTGCGCTGCAAGCTGTGCAGCGGTACGTACAGCTCTGCCGTCAGCAACATGCGTAAGCACCTCGCCTCCAAGCACCCGCTCGTGTCCGACCAAGCTGCCGCCGGCAACATGACGGTGCGCTGCAAGCTGTGCAGCGGTACGTACAGCTCTGCCGTCAGCAACATGCGTAAGCACTTCGCCTCCAAGCACCCGCTCGTGTCCGACCAAGCTGCAGCCGGCAACATGACGGTGCGCTGCAAGCTGTGCAGCGGTACGTACAGCTCTGCCGTCAGCAACATGCGTAAGCACCTCGCCTCCAAGCACCCGCTCGTGTCCGACCAAGCTGCAGCCGGCAACATGACGGTGCGCTGCAAGCTGTGCAGCGGTACGTACAGCTCTGCCGTCAGCAACATGCGTAAGCACCTCGCCTCCAAGCACCCGCTCGTGTCCGACGAAGCTGCAGCCGGCAACATGACGGTGCGCTGCAAGCTGTGCAGCGGTACGTACAGCTCTGCCGTCAGCAACATGCGCAAGCACCTCGCCTCCAAGCACCCGCTCGTGTCCGACCAAGCTCCGCCGGCAACGTAA
- Protein Sequence
- MRKHLTSKHPLVSDQAAAGNMTVRCKLCSGTYSSAVSNMRKHLASKHPLVSDQAAAGNMTVRCKLCSGTYSSAVSNMRKHLASKHPLVSDQAAAGNMTVRCKLCSGTYSSAVSNMRKHLASKHPLVSDQAAACNMTVRCKLCSGTYSSAVSNMRKHLASKHPLVSDQAAAGNMTVRCKLCSGTYSSAVSNMRKHLASKHPLVSDQAAAGNMTVRYKLCSGTYSSAVSNMRKHLDSKHPLVSDQAAAGNMTVRCKLCSSTYSSAVSNMRKHFASKHPLVSDQAAAGNMTVRCKLCSGTYSSAVSNMRKHLASKHPLVSDQAAAGNMTVRCKLCSGTYSSAVSNMRKHFASKHPLVSDQAAAGNMTVRCKLCSGTYSSAVSNMRKHLASKHPLVSDQAAAGNMTVRCKLCSGTYSSAVSNMRKHLASKHPLVSDEAAAGNMTVRCKLCSGTYSSAVSNMRKHLASKHPLVSDQAPPAT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -