Nswa034643.1
Basic Information
- Insect
- Nematopogon swammerdamellus
- Gene Symbol
- -
- Assembly
- GCA_946902865.1
- Location
- CAMPPV010002393.1:984899-990854[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 6.7e-05 0.23 12.1 0.0 20 41 2 23 1 27 0.84 2 4 3.1e-05 0.1 13.2 0.0 11 38 22 49 21 53 0.82 3 4 3.6 1.2e+04 -3.1 0.0 7 18 162 173 161 173 0.85 4 4 2.4 8.3e+03 -2.5 0.1 29 41 203 215 203 217 0.78
Sequence Information
- Coding Sequence
- ATGAAGCAAGCGGCGGAGATCCTCGGCGTGAGCTACGGCACGCTGTACGGCCGCTACCGCGACGCGGTGCGACTGAAGGAGCTGGAGATGAAGCAAGCGGCGGAGATCCTCGGCGTGAGCTACGGCACGCTGTACGGCCGCTACCGCGACGTCTACGGCTGCATCAATAGACCTTATCGGATGAAAGACTTCTGGACGGAGCAGGGCCCCGCGGAGGTGCTGATGCGGCTGCAGCGCGGCGAGTGCACGCTCGGCGCCGCCGCCGAGGCGCTGGCGGTCTCGCCGCACAACCTCGCCACCTACCTGTCGGGGCTGCAGCCGCCGACCACTATACAGCTCGACGACGAACCCGAGTTCGAGCCGATCCCGATAGAGGGCGAGCCCGTGTCGGACGGCAGACAGAAGAAGTGCTTCGCGACGTCTTCGCAGGCGCCGCCGCCCTGCCCCATCAAGAGCATGAGGAAGAACGTCGCCGCCGCCGAGAAGGCGGTCAAGAAGATCCTGATCGGCTCGCTGTCGTCCGACAACGAGGACAGCATCCCCGTGTCCATCATCAACCAGCGCGAGACTCGCTCCAGCAAGCCCGGCCAGCTCGTGAAGCCAGCTCCGCCGAGTACGCTATCGACGGCGAGCCGGGGGCACGCCAGCTCGGACTCCGGCTCCGGCGCCGCCTCGCCCTCCAGCCTGATGCGCTCGCGGCCCGACCTCACCATAGTCGCGTCCTCCACGCGTCACGACACGTGA
- Protein Sequence
- MKQAAEILGVSYGTLYGRYRDAVRLKELEMKQAAEILGVSYGTLYGRYRDVYGCINRPYRMKDFWTEQGPAEVLMRLQRGECTLGAAAEALAVSPHNLATYLSGLQPPTTIQLDDEPEFEPIPIEGEPVSDGRQKKCFATSSQAPPPCPIKSMRKNVAAAEKAVKKILIGSLSSDNEDSIPVSIINQRETRSSKPGQLVKPAPPSTLSTASRGHASSDSGSGAASPSSLMRSRPDLTIVASSTRHDT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -