Nswa025171.1
Basic Information
- Insect
- Nematopogon swammerdamellus
- Gene Symbol
- bab1
- Assembly
- GCA_946902865.1
- Location
- CAMPPV010001057.1:56937-80543[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.5e-05 0.05 14.2 0.0 1 38 450 486 450 491 0.90 2 2 6.5e-07 0.0022 18.6 0.0 5 35 657 686 655 691 0.92
Sequence Information
- Coding Sequence
- ATGGCGCTAGCTCCGCAGCAGTTCTGCGTCCGATGGAACTCTTACCACACAAACCTGCAGACGGTTTTCCCGAAGCTGCTCTCGACGGAGAACTTCGCGGACGTGACGCTGGCGTGCGAGAACCGGCAGCTGAGGTGTCACAAGGTTGTTCTGAGCGCTTGCTCGGCTTACTTCGAGCGTCTGCTGGTGCAGAACCCGTGCAAGCATCCCATTATCTTCATGAAAGATATGAGGTTTAGCGAGATGCAGTCTCTGGTGGACTTCATGTACAAGGGCGAGGTGAACGTGACGCAGGACGATCTGCCGAGCCTGCTCAAGTCGGCGGAGGCGCTGCAGATCAGAGGTCTGTGCTCGAGCGAGGCCGGCGGCGCGGGGTGCGCCGAGGCGGAGGCGGAGGCCGCGCCGAGCGCCAAGAGCACGCAGACGAGCGACGGCCGCGACTACACGCTCGCCACGGAGGCTCTGCTCGCGCACGCGCAGCTCGACTGCGGAGCTGGCACCGGTGGTGTTGGTGCGACGACGCGCGCCGCGGACCGCACGAACGGCCCGGCGCCGAAGAAGCGCGCCTGCGGCGGCGCGGAGCGGGCGGCGACCGGCGCGGGCGCCGGCGGAGCCCTGACCCAGCCCGAGCTGAAGGAGGAACAGGTTGAGGAGGACGGACTGTTCTACGGGGAGCTGGAGCACGACGACATTGAGTTCAATGAGGACGACGAGCCCGGCAAAGCGGGCAGCAGTCTCGGCCAACCCTCTGTGCATCCTTTCATTCGCGTCAAACCTGAAAGTAAACTCTTTCAAACGAAAAATCCACAATCCAAAAGCGATTCCGACTACCTAACACGTCTCTCGCGCATGAACGCATTTGAAATACAATCGGAATTCGCCAAATATGGCTTCACCACAAATCTGAACGCGGACGAATCGCCAAAAACATCCGAATTGAAGAATAAAATCGACGACAACGACTTCTACAAGTCGTGGCTCGAACAGAACGGCGAGCTGGAAGTGTCCTTGCTAAGGATCAACGATAAGAAATCGTCGGATCACGATGCGAGGCGTGTCGCGTCCGAAGTGGAGCTGATACCGAAATCGAAGGCGAAGTCTCTGCTGGAGAAGACTTTGATGAAAAACGACCAGAAGACTGCAAAAACGCCAGAAGTGCCTATGAGGAAGTTCGGAAAGCGGGGTCGTCCGCCCCTTTTCAAGGACAAGTATTTTGAGATAGGTGACAGCGTTCTGAAGGCGGATTTGGACCAGTTTTTGGAAGGGAAAGAGATAAGCTCGTCTGGGCTCTCGAGGAAGGACTTGGAGCGGGTCATGATGGGGAAATTCAATCCTAACCGGCGTTATTCTAACGAGGCGATGTGGGCAGCACTTATGGACGTTAAGAAAGGAGGCAGTATATATCGCGCAGCGCAAACGCACAAGGTCCCGCGCAAATCGCTAAGGAACTGGATGAAGCGATGTCAGATCAAATCCTCGTTCCCCATGCCGCAGCAGCTTAAGCAGTTCGTCGAGAACAACAAGAGGCAAAAGGAGATTAAATACCCCGATTTCCAGGGTACTTCCACCGACGCGGCAATCCCATTCAACAATGGCAACACAGATTATGCTCAGTTCGAGCCGGAGTTTGACATCGGCAAACACTTTTTGACGTTCACTAGTTCGAATACGGTTTCTAGCGACGACGAAATGAGCTTAGTCGTAGCAGAAACGAGTCACTCTAAGGATACGAAGGGCGATGGCGGCGCGTTTTATCCGGGCAACGTAAAAAGCGAGGACGTCGTACGGACAACATCGACCGAGATATTCCGGAGGCATTTCATTGGCGTTCCTGACTTCGACGACGACGGAATACCGATGAATATTCACGCGAGGCCGCGGATTGTCGGCAGGCGGCCCAATTCGATCGTCAACATTGAAACGGACGTCTTTCAGGAGAAGTCCTACAAGCAATATTCGTCCCAGCATCTCCGGGAGGCGCTGATCGCTGTCAAGAAAGGATTCAGCGTATACGCCGCGTCCAACAAATACGGCGTGCCGAGGAAAACTTTACGAAATTGGATGGAAAAGTATGATATTAAGAGTCAGTTTTCTAAGGGCCGCCGCGGCATGAGAAACCCACAGATACTCGATCCGCTGGGTCTGATGACCCAGCGCGGTTCGGAGCTGTACACAGATCCGATTTGA
- Protein Sequence
- MALAPQQFCVRWNSYHTNLQTVFPKLLSTENFADVTLACENRQLRCHKVVLSACSAYFERLLVQNPCKHPIIFMKDMRFSEMQSLVDFMYKGEVNVTQDDLPSLLKSAEALQIRGLCSSEAGGAGCAEAEAEAAPSAKSTQTSDGRDYTLATEALLAHAQLDCGAGTGGVGATTRAADRTNGPAPKKRACGGAERAATGAGAGGALTQPELKEEQVEEDGLFYGELEHDDIEFNEDDEPGKAGSSLGQPSVHPFIRVKPESKLFQTKNPQSKSDSDYLTRLSRMNAFEIQSEFAKYGFTTNLNADESPKTSELKNKIDDNDFYKSWLEQNGELEVSLLRINDKKSSDHDARRVASEVELIPKSKAKSLLEKTLMKNDQKTAKTPEVPMRKFGKRGRPPLFKDKYFEIGDSVLKADLDQFLEGKEISSSGLSRKDLERVMMGKFNPNRRYSNEAMWAALMDVKKGGSIYRAAQTHKVPRKSLRNWMKRCQIKSSFPMPQQLKQFVENNKRQKEIKYPDFQGTSTDAAIPFNNGNTDYAQFEPEFDIGKHFLTFTSSNTVSSDDEMSLVVAETSHSKDTKGDGGAFYPGNVKSEDVVRTTSTEIFRRHFIGVPDFDDDGIPMNIHARPRIVGRRPNSIVNIETDVFQEKSYKQYSSQHLREALIAVKKGFSVYAASNKYGVPRKTLRNWMEKYDIKSQFSKGRRGMRNPQILDPLGLMTQRGSELYTDPI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01042785;
- 90% Identity
- iTF_01042785;
- 80% Identity
- iTF_01042785;