Nswa030898.1
Basic Information
- Insect
- Nematopogon swammerdamellus
- Gene Symbol
- -
- Assembly
- GCA_946902865.1
- Location
- CAMPPV010001541.1:32016-61636[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 5 1.4e-11 4.8e-08 33.5 0.0 4 39 235 271 232 275 0.89 2 5 2.3e-12 8e-09 36.0 0.2 2 39 287 324 286 327 0.93 3 5 3.6e-15 1.2e-11 45.0 0.0 2 45 342 386 341 386 0.96 4 5 2.3e-18 7.8e-15 55.2 0.0 1 42 393 435 393 437 0.96 5 5 1.8e-07 0.00061 20.3 0.1 19 42 450 474 450 476 0.93
Sequence Information
- Coding Sequence
- ATGATGACCGGACACCCCGAGAGTCCGCAGTCGGCGTCCCCGTGCGAAGGCCCCCGCTTCCCGCTCAAGTTCGAGCCGCAGTCCGACTCCGAAGATAGCAACCTTCAGGGCTGCTATGACGTCCACAGCTCACACACCGCCCTTCATATGTCACAGATGACACGAGCGTCGCTCGAGTCAGAAAGTCCAGGTCTTCCAAACGAACTGATTCCGTCGACTGAGACCAGCGTGCTCACTCTTCAGAGTACAAATGGTGGGCAGCATCAGTCACATCTGCTGCAGCATTTGCAGCGCGTGAACATGGGCGCGCTGGACACGGAGTACAGCCCGCCGGTGCCGCTGCCGCCGAGCGCGACGCCCGTAGCGCACGTCAAGCTGGAGTCGCGCTCGCCGGAGCCGCAGCCGCACCCCGCGCCGCACTGCATCAAGCTCGAGAGTCTAGACGCGCACGAACAGGGCACGACTCTGGACATGGATCGACACATGACGGTGCACGGACGCAGCGCTCCGCCCGCCTCGGCCCTCGCGCGCGACTACCTGCCGCTGCTGCCCGTCAAGGACGAACCGCTCTCCGAAGGAGAGCAACAGCTGCTGAGCGGAGAGGACACCAACGACTCTATGAGCGGCCACGCGGGAGACTGCAGCGGCTCCAGGAGTGCTGGAGCCCTGCACAGCGCCAGCCCCAAGACCTGGACGCAGCAGGACATGGATAATGCGCTTGAGGCTCTCCGCAGTCATAACATGAGCCTCACCAAGGCGTCAGCGACGTACGGCATCCCGTCGACGACGCTGTGGCAGCGCGCGCACCGGCTCGGCATCGACACACCCAAGAAGGAGGGCTCCAGCAAAACGTGGAGCGAGGCGGACCTGCACAACGCACTGCACGCGCTGCGCACTGGCGCCATCTCCGCTAATAAGGCCAGCAAGGCGTACGGTATCCCGAGCAGCACCCTCTACAAGATAGCTCGGCGCGAAGGTATCCGGCTGGCGGCTCCATTCAACGCGGCGCCAACCGCCTGGCGCCCCTCCGACCTGGAGCGCGCGTTGCACTCCATCCGCTCGGGACACAACTCTGTGCAGAGAGCGTCCACCGAGTTCGGCATACCCACCGGCACTCTATACGGGCGGTGTAAGCGAGAAGGCATCGAGCTGTCTCGGTCTAACCCCACACCGTGGAGCGAGGACGCCATGGGCGAGGCTCTAGAGGCAGTCAGGGTGGGGCAGATGTCCATCAACCAGGCGGCGATCCACTACAACCTGCCGTACTCGTCGCTGTACGGCCGCTTCAAGCGCTGCAAGTACGAGGAGCCGCAGCACCCGGCCGCGCTCCAGCACGCCGCACACCACCTGCAGCAGGCGGCGATCCACTACAACCTGCCGTACTCGTCGCTGTATGGCCGCTTCAAGCGCTGCAAGTACGAGGAGCCGCAGCACCCGGCCGCGCTCCAGCACGCCGCACACCATCTGCACCAGAACCAACAGCCAATGGTGCAGCACGGCCACATGGCGGAGAGCGTGGAGCCGGAGCGGCCGGCGGCGGAGCTGTACCACTACGCGCACGCGCACGCGCACGCTCACATGTCGCACGCGCACCCGCACCAGCACCACCTCCTGCCGCACGAGTACCAGCACGCGCAGCCCTACCAGCAGGTGAGCGCCGCCCGCAACGCCGCCAACTTTGGCGCACAGGCGTGGGCATGCACGGGAGCCACGGGCCACACAATGGCATCGCGACCAGCTGAGGCCACGCCCCCGACGCGGCGGACACGCCACCCACCCTCGCCTACCACCATCACCTCCCATGACCTCGGAGCGCCTTCCACTCGCGCCGCTGCTAGTCTGAACACAGAAACTTTGCCATCTTCTTGGACTCTCAAGAGCGCCCTCGAACATCTCGTGAGCGCCCTCCGACATCTATACGAGAGGGCGTCGCTCGTCGGGGTGTGTGGGCGGAGGCGACGGTGGCGGCGCGCGCGTCTCACTTACAAGCTAGTTACGTATGAGTGCGAGCGGGGAGGGGGCGGGCGACCGGGACCGGGGCGGAGCGCGGGACTAGAGGTCGCCGGAGCGCGGCGGGAGGAGGGTGGGGCGGGGGCGGGACGCGGCGGTCACACCGGGCCGTAG
- Protein Sequence
- MMTGHPESPQSASPCEGPRFPLKFEPQSDSEDSNLQGCYDVHSSHTALHMSQMTRASLESESPGLPNELIPSTETSVLTLQSTNGGQHQSHLLQHLQRVNMGALDTEYSPPVPLPPSATPVAHVKLESRSPEPQPHPAPHCIKLESLDAHEQGTTLDMDRHMTVHGRSAPPASALARDYLPLLPVKDEPLSEGEQQLLSGEDTNDSMSGHAGDCSGSRSAGALHSASPKTWTQQDMDNALEALRSHNMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGSSKTWSEADLHNALHALRTGAISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTAWRPSDLERALHSIRSGHNSVQRASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRVGQMSINQAAIHYNLPYSSLYGRFKRCKYEEPQHPAALQHAAHHLQQAAIHYNLPYSSLYGRFKRCKYEEPQHPAALQHAAHHLHQNQQPMVQHGHMAESVEPERPAAELYHYAHAHAHAHMSHAHPHQHHLLPHEYQHAQPYQQVSAARNAANFGAQAWACTGATGHTMASRPAEATPPTRRTRHPPSPTTITSHDLGAPSTRAAASLNTETLPSSWTLKSALEHLVSALRHLYERASLVGVCGRRRRWRRARLTYKLVTYECERGGGGRPGPGRSAGLEVAGARREEGGAGAGRGGHTGP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -