Nswa005700.1
Basic Information
- Insect
- Nematopogon swammerdamellus
- Gene Symbol
- retn
- Assembly
- GCA_946902865.1
- Location
- CAMPPV010000172.1:470937-482572[-]
Transcription Factor Domain
- TF Family
- ARID
- Domain
- ARID domain
- PFAM
- PF01388
- TF Group
- Helix-turn-helix
- Description
- This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 7.9e-20 3e-16 60.5 0.0 15 89 62 134 57 134 0.93 2 2 5.3 2e+04 -3.1 0.0 23 40 172 190 165 194 0.68
Sequence Information
- Coding Sequence
- ATGGCGTCCTCGCGGAACCAATCGGCGCGCTTCGCGTTCGAGACGCGTCGCGCGACGCAACGCAACGCGGCAACGCGTGCGCGCGCCGCGCGTGCGTTTAGCACGGTCGCGCGAAAGTCGCTGAGCGCCGCGCGCATCCGCCGAACGCAACCGCCCGATTCCCCCGAACGCGACGCGACCGCGCGCTCCAGGACACCAATAAACCGACTTCCCATAATGGCGAAGTCTGTATTGGACCTCTATGAGCTATACAACCTGGTGATCGCTCGCGGGGGCCTGGTCGAGGTAATCAACAAGAAGCTGTGGCAGGAGATCATCAAGGGTCTCCGTCTGCCCTCCTCCATCACCTCCGCGGCCTTCACTCTGCGCACACAATACATGAAATACCTGTACGAGTACGAATGCGAGAAGAAGAACCTGTCGACTCGCAGCGAATTGGACGCCGCCATCGAGGGCAACAAACGCGAAGGGCGCCGCGCCTCCGGGCAATACGACGCGCACAACGCCATACCTATTCCGGCGCTTCAGCGCAACGTGCCAGTATCTCTGCAGCAGCTATCTCAGCACATGCAGCCGCTGTCGCTCTCGCTCGGCGGCGTGGGCGGCGTGGGGGCCCGGCTGCCGCCGCTGCCGCCGCACGCCGCCGCACACCTGTCGCACCACGAGCTGGAGTACCGCGTGCGGGAGTACATGAAGCTTATACAGCAGCAGCAGAGGGACTTCCGGCGCAATGGATCAGAATCGCCACCCAACGCGGTCGGTGTGATGTCGCCCCGCGACGCGGCGCTCAACGCTCTCGACGTGTCGCGCCTCACTCTGTGGTCCCTGTACAACAACAACAACAACACGCCGCCGCACGCAGACCTCGAACCACAACGTGAGGCGCTGAACCTGTCCGAGAGCCCCGGCTCCTGCGCTGTGGGCGTGAAGCGCGAGGCGAGCTCGCCCGCGCCGCCGGCCAAGCGGCGCACGCCGCGCCCCGCCACGCCGCCTGCGCACGCGCCGGCCCCGCCCCCCGCGCCGCCCACGCCGCCGCACCACCACGCGCCGCACCACGCGCCGCTCCACAACCACCAGCAGGTGAACGGCGCGCACGGCGCGGCCTTCAAGATTACCACGAGAGGCGACGCAAGCACCGGCGACCAACAGCTCGTGGTGTCCATAGAGCTCAACGGAGTGACCTACGAAGGAGTGCTGTTCCCCGCCGCGCAGAGCGGCAACCCACAGAGCACGCCCGGCCCACACCGGCCTCTTGTATCCTAG
- Protein Sequence
- MASSRNQSARFAFETRRATQRNAATRARAARAFSTVARKSLSAARIRRTQPPDSPERDATARSRTPINRLPIMAKSVLDLYELYNLVIARGGLVEVINKKLWQEIIKGLRLPSSITSAAFTLRTQYMKYLYEYECEKKNLSTRSELDAAIEGNKREGRRASGQYDAHNAIPIPALQRNVPVSLQQLSQHMQPLSLSLGGVGGVGARLPPLPPHAAAHLSHHELEYRVREYMKLIQQQQRDFRRNGSESPPNAVGVMSPRDAALNALDVSRLTLWSLYNNNNNTPPHADLEPQREALNLSESPGSCAVGVKREASSPAPPAKRRTPRPATPPAHAPAPPPAPPTPPHHHAPHHAPLHNHQQVNGAHGAAFKITTRGDASTGDQQLVVSIELNGVTYEGVLFPAAQSGNPQSTPGPHRPLVS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -