Nkoe022520.1
Basic Information
- Insect
- Nemapogon koenigi
- Gene Symbol
- -
- Assembly
- GCA_963924495.1
- Location
- OZ004656.1:4922620-4935832[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.24 17 6.7 0.8 1 23 298 321 298 321 0.91 2 11 0.0031 0.21 12.6 1.8 1 23 328 350 328 350 0.98 3 11 1.5 1e+02 4.2 3.9 1 23 354 379 354 379 0.77 4 11 5.1e-05 0.0035 18.3 0.6 1 23 383 406 383 406 0.98 5 11 0.068 4.7 8.4 1.4 5 23 411 429 410 429 0.75 6 11 0.19 13 7.0 2.4 3 23 437 457 436 457 0.93 7 11 4.8 3.3e+02 2.6 1.2 3 21 467 485 466 490 0.90 8 11 2.7e-05 0.0019 19.1 1.3 2 23 496 518 495 518 0.96 9 11 1.8e-06 0.00012 22.8 1.9 1 23 524 547 524 547 0.96 10 11 0.0096 0.67 11.1 0.1 1 23 556 578 556 578 0.95 11 11 0.03 2.1 9.5 0.8 1 23 584 607 584 607 0.94
Sequence Information
- Coding Sequence
- ATGTTGGGGAGGGGATACGTGTCACTGCGGTATGCGACTAGGCATTACATGCGGTGGCCTACGAGTAAGGAAGCGGTGGCACGCTGTTTGGGTGGGAGATGGTATTTGAGGGAGAGAGAGGGCTATAGCGTGCGGCAAGGCACTTTGCTAATAGTCCTGGTGAAAGGAGCGAAAATCTCTGAAAAGAGGTATGAGGGGTGGGGAAGGTTAAACATGTCTTATTCAAGCTATGTAAGTATAATAGAAGAAAGGGTATGCAATATTTGTCTAAGTAGTGATCGCAAGCTGTTTGCTATGAGGTACATGGTGATCCCGCAGGACTGGATAGATATTGGTCTAAACATCCAGTATGGGAAGCTGTGCTGGGAGTGTGCAGCTGTTATAAATAAAGTGAGCTGCTTCAAGACGAAGGCTATGTTGGCTCAACAAGTGTTGAAACGGGAATTCGAGCCTTCACAATTTAGATCTCTAAGCACACTGAACTACAAATTCAACAATACCAgagattatttttacaaaatgcaTACAGATACCGACAATCATTTAGAATTAGATACAGAATCTAGAACACATACTATTGTTGAAAAGGAAATTAAAGAAGAACCAGTCAGTGATGATGCCCGATCTAACAATGACCAATATGAACATATTGTTGACATTGATATTAAAGATAATGAAATAAAAGATCTAGACCTTAAACAGGAAACTGTTAGTGACTTGGACAGAAATACTAATTTAAAAGTAACAACACCAGAAAGTAATTTAACACAATTTGAAGATGATGATATGTTTAAGAATTGCAATAGTTATTTTGTATGCACTCTCACAGAGGAAGAATTATTTAATCAAAGGGATAAGGAGAAGACAATGATACAGTATTTAAAGACTAATTTTAAGTGTGAAACTTGTGTTTTACCGTTTCGTAGCATGGAGCGTTACGCTGCTCATATGGTTGATTGTCATAgtaagGCTATCGGCAACTTTGTGTGCGGTATATGCGCTTGTCGTTTTAAAAATCAGCAAATGTTAGACGACCATACGAGAAGTCACAACGTCATATACAGATGTGGTATATGCAAGCATCAGTATTACTATAGAGATTTGTTGCAAATGAAAACACATATGAGGGTCAGTCATAGTGGAGATTATACGTGTGAGGAGTGTGGTGTTGTGTTTAattcCAAAGGTTCGTTCGGATATCACAGAAGGACACAACACAAATCTAAGGAACATTGCGACCAGTGTGGAAAGGTGACGACAAATCTTAAAGCACATCAAGAAACCCACAAGAAAGCGCCGACGGAAGAGTGCATAATATGTCACAAAGTATTAAAGAGCAGAACCAGTTTACGGTTCCACATGTTGACGCACACCAAGCCCAACAAAGACGAAGCTTACTGCGCCGAGTGCGacgtttattacaaaaataaacacatcTACAAGAGTCATCTCAAGAACAACGCGAAACATGCCAAAGCTGATAAAGAGTGCGACTACTGCCACAAGCGGTTTGTGAGCAAGTTGAGTCTGGCAAAACATATAAATGTTGTTCACTTCAATAAATTGGATCATGTCTGTCAACTGTGCGGCAAGAAATTTAGCGTGGCCAGCCACCTTCGCAGCCATATAAAAGTAGTGCACGAGGGCATCGCCAAGCCGAGAAAGTTTGTCTGCGAGCTGTGTGGAAAGGGGTTCACTataaagaaaatattggacGACCATGTGAATACTCACACCGGCGCCAGACCATACAAGTGTGACAAGTGTCCCGCGCAGTTCGGTTTCAAGGCGGCTCTATACACGCACAACAAGTTGAAGCATTTGAAACTGAAGAAGAGCGGGAAAGCTGTGACGAACGGACACAGTAAAAAGATCGAGACAACATAG
- Protein Sequence
- MLGRGYVSLRYATRHYMRWPTSKEAVARCLGGRWYLREREGYSVRQGTLLIVLVKGAKISEKRYEGWGRLNMSYSSYVSIIEERVCNICLSSDRKLFAMRYMVIPQDWIDIGLNIQYGKLCWECAAVINKVSCFKTKAMLAQQVLKREFEPSQFRSLSTLNYKFNNTRDYFYKMHTDTDNHLELDTESRTHTIVEKEIKEEPVSDDARSNNDQYEHIVDIDIKDNEIKDLDLKQETVSDLDRNTNLKVTTPESNLTQFEDDDMFKNCNSYFVCTLTEEELFNQRDKEKTMIQYLKTNFKCETCVLPFRSMERYAAHMVDCHSKAIGNFVCGICACRFKNQQMLDDHTRSHNVIYRCGICKHQYYYRDLLQMKTHMRVSHSGDYTCEECGVVFNSKGSFGYHRRTQHKSKEHCDQCGKVTTNLKAHQETHKKAPTEECIICHKVLKSRTSLRFHMLTHTKPNKDEAYCAECDVYYKNKHIYKSHLKNNAKHAKADKECDYCHKRFVSKLSLAKHINVVHFNKLDHVCQLCGKKFSVASHLRSHIKVVHEGIAKPRKFVCELCGKGFTIKKILDDHVNTHTGARPYKCDKCPAQFGFKAALYTHNKLKHLKLKKSGKAVTNGHSKKIETT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -