Nkoe021659.1
Basic Information
- Insect
- Nemapogon koenigi
- Gene Symbol
- -
- Assembly
- GCA_963924495.1
- Location
- OZ004655.1:5562392-5565704[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.0046 0.32 12.1 0.7 1 23 94 117 94 117 0.97 2 17 1.4 99 4.3 0.1 2 23 143 165 142 165 0.83 3 17 0.0045 0.31 12.1 4.4 1 23 190 212 190 212 0.98 4 17 0.0028 0.2 12.8 0.5 1 23 216 238 216 238 0.98 5 17 0.18 12 7.1 0.2 1 13 243 255 243 266 0.86 6 17 0.52 36 5.6 3.3 1 23 273 296 273 296 0.87 7 17 8.8e-05 0.0061 17.5 3.6 2 23 304 326 303 326 0.95 8 17 0.5 35 5.7 0.3 1 23 414 437 414 437 0.94 9 17 1.5 1.1e+02 4.2 0.3 2 23 463 485 462 485 0.92 10 17 0.52 36 5.6 0.7 1 23 508 530 508 530 0.87 11 17 0.0082 0.57 11.3 0.8 1 23 534 556 534 556 0.98 12 17 0.00099 0.069 14.2 0.4 1 23 561 584 561 584 0.90 13 17 0.006 0.42 11.7 4.3 1 23 590 613 590 613 0.95 14 17 2.2 1.6e+02 3.6 6.6 1 23 620 643 620 643 0.92 15 17 6e-05 0.0041 18.0 1.0 1 23 649 671 649 671 0.98 16 17 0.0015 0.1 13.6 1.0 2 23 678 699 677 699 0.97 17 17 0.00036 0.025 15.6 6.3 1 23 705 728 705 728 0.97
Sequence Information
- Coding Sequence
- ATGTATATAGTAAtacacagacggacagacatgcACCGAAGTCTCGCGATAAGGGTTCCATTAGTACGTAATATAAGAAATACAGTTCTTAGCCTAACGGAAGTTGTTTTGTTCATAGGTGTTCAACAAGAAACCTCGAAAATTGTGATCGAAAATCAAACAAATATCATCCTGTCCCTGTCGAGGAGTAGAGGAAAAATTGTTCAGCATCTACAAAATTTAcatgcaattttaatttttactaacGCCACGCCCATACGCAACACCCCAGTGTCCACGTTTACTTGCGTATTTTGCTATGAGAAATTTCCACTAGCGTCCCAACTCAAAGCGCATAATCGTAGCAGCCACAGCAGCGCAATGCCGAGATATATGAAGGGTTCTAATTTCCATAGTTATGCAGTTAAACTTGACGTGACAGATTTGACATGTAACTTATGCTCCATTACGTTCCCTGATCTTGAGAAAATAATGCCCCATCTTAAGAACGATCACAACAAGATTGTACATCTAGATATACCAAACCATATGGTTCAATTCAAATTTGATGACTCCAACCCTAAACGATTTTATTGCGCGCACTGCTCCGTAGAGTTCAATACGTTCTATTGTCTCGTGCGCCACATGAACGTACACTATAGCAATTATCATTGCGAGCAGTGCGGATCTGCCTTCATCAATAATTTGGGGTTGAGAGATCATCTCGAGAGGCACAAGACTGGAACGTATCCTTGCAACTCCTGCGACAAAGTGTTTGAAACGTTGAAGCGAAAGTTGGGCCACGAGAGTTTAGTACATCTCTCTAAGAAGGACAAGTATATTTGCCCGCATTGCACTGAGAGGTTCACAGCGTACAACCACCGATTGATACATTTTAAGCAGGTTCATAATATAGAGATGACAGCTTTAAATTGTAACGCCTGCAACAAGACCTTTCGCTTTAAGAAACAGTTGACGCGTCATTTGAAAAGGTATCATTTGAATGAGAGACCTCATAACTGTGCTGAATGTAATAAAGGCTGGTTAAGTTTTGCGCTCACGAATGATGACACCGTAATCAAAATTCTACCGAAAATGGAACCTACTGCTGTCAACAAAGTGAAACAAAACTCGTTTCAAATGAGACCCAAGGGCAGATCAAACCCGGAACTGAAGAAGCATCTTcataatttacatattatacTAGAATATACAAACGCAACGCCACTACGTAACATGAACATCGGATCAACTACTAATTTCGCCTGCGAGTTCTGTAGTAATCAATTCTTAAAACCAAGTGCTCTTAAACTTCATATACTGAATAATCACGACCGTAATAAAATAAGTTACATGAGCAGTGCTCAATTTCACAAGTACCTTGTCAAACTGGATATTACAGATCTCACTTGTAATATATGCAAAGTGAAATTGTCTCGTGTTGAAGAGGCAATGACCCATTTCCAGAAAGTTCATAAATATGCATTACATTTTGATATACCCAGCCACATATTAGAATTCAAATTTAATGACACCGAAACGTATGCGTGTGTTTTCTGTACTGCTCAATTTTTACTCTTTAATAACTTAATACGTCACATGAataaacattacaaaaattataattgCAACAGATGCGAAGGTACCTTCGTCACCAGAAATTCTGTACTCTTGCATATGAAAAGTCATAAATCTGGTGATTTTGCTTGTGAGAAATGCGGTAAAGTATTTGACACTCAAAATAAGAGGCGAGAGCACCTTACGGCTGTGCATCTTAAAAAAGATAGACACAAGTGCTCTTATTGCGATGAACGCTTCAAATACTACAAAGATCGCAATACTCACATGTCTGAACTGCACGATATGAAACCGATTATTCACAAGTGCAACGCTTGTGATCGAACCTTCGACCTTAAATCAAAATTGACATTCCACACGAAACATTTTCATCTTATGGAGAAGCCGTTTCAATGCACGGTGTGTGATATGTCATTTCCAATCAAGAAATATTTGACAGATCACATGACGAAGCATGGTGACGGCAAGAATATTCAGTGTGAGATCTGTCTAAAGTGGTATTCTAGAAAAAAAACCTTGTTTCAACACATGAAGATACATAACAATATCAGAGCGCACACTTGTTCTTACTGTGGCCAATCGTTTGTACAAAAATGTAGTTGGAGAACTCATCTTAAAACTAAACATGGGAAAATAGTATGA
- Protein Sequence
- MYIVIHRRTDMHRSLAIRVPLVRNIRNTVLSLTEVVLFIGVQQETSKIVIENQTNIILSLSRSRGKIVQHLQNLHAILIFTNATPIRNTPVSTFTCVFCYEKFPLASQLKAHNRSSHSSAMPRYMKGSNFHSYAVKLDVTDLTCNLCSITFPDLEKIMPHLKNDHNKIVHLDIPNHMVQFKFDDSNPKRFYCAHCSVEFNTFYCLVRHMNVHYSNYHCEQCGSAFINNLGLRDHLERHKTGTYPCNSCDKVFETLKRKLGHESLVHLSKKDKYICPHCTERFTAYNHRLIHFKQVHNIEMTALNCNACNKTFRFKKQLTRHLKRYHLNERPHNCAECNKGWLSFALTNDDTVIKILPKMEPTAVNKVKQNSFQMRPKGRSNPELKKHLHNLHIILEYTNATPLRNMNIGSTTNFACEFCSNQFLKPSALKLHILNNHDRNKISYMSSAQFHKYLVKLDITDLTCNICKVKLSRVEEAMTHFQKVHKYALHFDIPSHILEFKFNDTETYACVFCTAQFLLFNNLIRHMNKHYKNYNCNRCEGTFVTRNSVLLHMKSHKSGDFACEKCGKVFDTQNKRREHLTAVHLKKDRHKCSYCDERFKYYKDRNTHMSELHDMKPIIHKCNACDRTFDLKSKLTFHTKHFHLMEKPFQCTVCDMSFPIKKYLTDHMTKHGDGKNIQCEICLKWYSRKKTLFQHMKIHNNIRAHTCSYCGQSFVQKCSWRTHLKTKHGKIV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -