Basic Information

Insect: Nemapogon koenigi
Gene Symbol: -
Assembly: GCA_963924495.1
Location: OZ004655.1:6010006-6017045[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 8.2e-05 0.0057 17.6 0.7 1 23 243 265 243 265 0.97

2 9 0.013 0.91 10.7 0.3 2 23 332 353 331 353 0.95

3 9 8.2e-05 0.0057 17.6 0.2 1 23 357 380 357 380 0.96

4 9 7.5e-06 0.00052 20.9 0.8 2 23 385 407 385 407 0.97

5 9 0.67 46 5.3 0.4 2 23 414 436 413 436 0.94

6 9 0.00011 0.0074 17.2 2.2 1 23 442 465 442 465 0.98

7 9 0.011 0.74 10.9 5.2 1 23 471 493 471 493 0.98

8 9 2.7e-06 0.00019 22.3 1.2 1 23 499 521 499 521 0.99

9 9 0.00011 0.008 17.1 2.7 1 23 527 549 527 550 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	8.2e-05	0.0057	17.6	0.7	1	23	243	265	243	265	0.97
2	9	0.013	0.91	10.7	0.3	2	23	332	353	331	353	0.95
3	9	8.2e-05	0.0057	17.6	0.2	1	23	357	380	357	380	0.96
4	9	7.5e-06	0.00052	20.9	0.8	2	23	385	407	385	407	0.97
5	9	0.67	46	5.3	0.4	2	23	414	436	413	436	0.94
6	9	0.00011	0.0074	17.2	2.2	1	23	442	465	442	465	0.98
7	9	0.011	0.74	10.9	5.2	1	23	471	493	471	493	0.98
8	9	2.7e-06	0.00019	22.3	1.2	1	23	499	521	499	521	0.99
9	9	0.00011	0.008	17.1	2.7	1	23	527	549	527	550	0.96

Sequence Information

Coding Sequence: ATGAGTTCTAATAAAACCAAAGGTCCTTTACTGGACCCAGCTACGTGTAGATGTTGTAAATCTGTGAAGAAATGTCGCTTACTCAACTTTGAGTATAATTGGATGGATAAACTGGAAATATACACACATATGTTTGTGGACTGTTTTGGTTTGCTTCTATCTCAAGTAGACAGGGACACCTCCAGCGGGATATGTGCTACGTGTGTGGTGCGACTAAGAGATGCCTGCGCTTTTAAAGCTCAAGTACTGCAGTGTGAAGAGTATTTTTTGAAggaaaaattgaaaatgaatagcgatgGTGAAATAAAATCTGAGCCAATAGATGACAATAGTGATGAAGATCATTTATCATACGATGTTAGTATGTCTGACAATGATTATGATGTGAAGGTGCCAGATATAAAACAAAGCTTTGTTGAACTTGTCGAAGTACCAGTGAGTATAAAAGTGGAAGGTCCCAGTCATCATTCTGGTGGCAGGATGGCTGTCAAAGATAAACGTTTGGAAAATAAAACGGTAAAAAGAGAGATGAAGATAAGGAAACCTATGAAGAGGTTGGTGAGGCCGCTGAGACGAGATAGACCTGGCACACCAATGAAACGTTTAAGCAACGCTATACAGTCTGTGTTGCGGAAGGAAGACGAAATTGAGCACATGGCGGAATCGAACCTGCTAAACCTAGCTGAAAATTCGTACGCCTGCCCGTTCTCCAACCGATTTAGCTCCTACTTTTGCTTTTATTGCACCGAAATGTTCACAGACCCGGCTCTGTTGAGAGCACATACAAGCAAACACAATCCGAAATTGTACGAGAAAATCTTTAAAAGACGCAGCTACCCGAAATTCGATATCACTCGGATAGATTGCAGGCTTTGTCCGGCGAAAATTGATGATTTGAACGCTTTTAAGGAGCATTTATTCAACGCGCACGGGAGAAAATACTACCAAATTAAAGATGGATTTTTAACTTTTCGCCTGACCGATTCGGAAATGCGGTGTCTAGAATGCGACGAAACGTATCCCTATTTCGACAAATTATTGAAGCACACGATCGAGCATTATAGGAATTTCACTTGCGATGTGTGCGGGGAGGCGTTTTTAACTGAAAGTTCTTTGAAAAGGCATTTAAATGAGAATCACAAGAAGAAAAACGAGTGCCACGATTGCGAAAAGTCGTTCGTATCCGAGCAATCATTGCAAGTTCATTTAAATACAGTTCATAAAAGAGAGCCTACTATATCTTGTTTGAAATGCGATGCTATGCTTTTTACATATAGTTCTAGGACATCCCATATGAATGAGGTTCATGGAGTTAGCGATAAGTATCCCTGTAATTTGTGTGATCGAATTTATTATAGGAAAAGATCCTTAAATGAGCACAAGAGAAGATTCCACGGCGATGTTAAACGGCATCAATGTGAATTTTGCTCTGAACGATTTTTTACTCCATGCCTTTTAAAAGATCATTTAACAACGCATACTGGGGAGAAGAAATATCGGTGTGATTTTTGCGATAAATCCTATCCAAGATTGAAGACTTTGAAATTGCATATTAGGATCCATACGAATGATAGGAGATTCAAATGTCAAGTGTGCAGTTCGGCCTTTGTTCAAAAGATAAGTTTGAAAAGTCATATGAAAAGTCATCATCCAGATTTTTTGCTAAatgatacataa
Protein Sequence: MSSNKTKGPLLDPATCRCCKSVKKCRLLNFEYNWMDKLEIYTHMFVDCFGLLLSQVDRDTSSGICATCVVRLRDACAFKAQVLQCEEYFLKEKLKMNSDGEIKSEPIDDNSDEDHLSYDVSMSDNDYDVKVPDIKQSFVELVEVPVSIKVEGPSHHSGGRMAVKDKRLENKTVKREMKIRKPMKRLVRPLRRDRPGTPMKRLSNAIQSVLRKEDEIEHMAESNLLNLAENSYACPFSNRFSSYFCFYCTEMFTDPALLRAHTSKHNPKLYEKIFKRRSYPKFDITRIDCRLCPAKIDDLNAFKEHLFNAHGRKYYQIKDGFLTFRLTDSEMRCLECDETYPYFDKLLKHTIEHYRNFTCDVCGEAFLTESSLKRHLNENHKKKNECHDCEKSFVSEQSLQVHLNTVHKREPTISCLKCDAMLFTYSSRTSHMNEVHGVSDKYPCNLCDRIYYRKRSLNEHKRRFHGDVKRHQCEFCSERFFTPCLLKDHLTTHTGEKKYRCDFCDKSYPRLKTLKLHIRIHTNDRRFKCQVCSSAFVQKISLKSHMKSHHPDFLLNDT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -